Wall clock time and date at job start Wed Apr 1 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 24.99833 * 7 6 5 9 9 O 1.42892 * 109.47670 * 145.00283 * 7 6 5 10 10 C 1.53003 * 109.47168 * 265.00338 * 7 6 5 11 11 N 1.46500 * 109.47410 * 179.97438 * 10 7 6 12 12 S 1.65598 * 120.00170 * 164.99746 * 11 10 7 13 13 O 1.42102 * 106.40251 * 178.54108 * 12 11 10 14 14 O 1.42098 * 106.40171 * 311.46203 * 12 11 10 15 15 N 1.65603 * 107.21742 * 65.00081 * 12 11 10 16 16 C 1.46500 * 119.99880 * 269.99988 * 15 12 11 17 17 C 1.46500 * 120.00113 * 90.00104 * 15 12 11 18 18 C 1.50697 * 109.47090 * 95.00169 * 17 15 12 19 19 H 1.07994 * 119.99982 * 359.97438 * 18 17 15 20 20 C 1.37874 * 119.99757 * 180.02562 * 18 17 15 21 21 N 1.31521 * 120.00150 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46941 * 59.99795 * 22 20 18 24 24 H 1.48504 * 109.47125 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47224 * 299.99816 * 22 20 18 26 26 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 27 27 C 1.38143 * 120.05412 * 359.97438 * 26 6 5 28 28 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 29 29 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 31 31 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 32 32 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 33 33 H 0.96697 * 114.00414 * 59.99380 * 9 7 6 34 34 H 1.09004 * 109.47076 * 300.00052 * 10 7 6 35 35 H 1.09005 * 109.47386 * 59.99548 * 10 7 6 36 36 H 0.97003 * 119.99764 * 345.00108 * 11 10 7 37 37 H 1.09002 * 109.47426 * 90.00361 * 16 15 12 38 38 H 1.08997 * 109.46949 * 210.00093 * 16 15 12 39 39 H 1.09005 * 109.47262 * 330.00186 * 16 15 12 40 40 H 1.09008 * 109.46951 * 214.99939 * 17 15 12 41 41 H 1.09003 * 109.46914 * 334.99735 * 17 15 12 42 42 H 0.96997 * 119.99572 * 180.02562 * 21 20 18 43 43 H 1.08001 * 119.97543 * 180.02562 * 26 6 5 44 44 H 1.08001 * 120.02739 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 4.9812 4.9189 -0.4365 9 8 3.2195 5.9431 -0.7768 10 6 4.1051 5.5315 1.4338 11 7 4.7707 6.8365 1.4327 12 16 4.7092 7.7985 2.7793 13 8 5.4675 8.9615 2.4766 14 8 3.3465 7.8416 3.1796 15 7 5.5257 7.0082 3.9840 16 6 4.8102 6.0903 4.8737 17 6 6.9635 7.2271 4.1600 18 6 7.1855 8.2933 5.2016 19 1 6.3402 8.7613 5.6839 20 6 8.4678 8.6719 5.5381 21 7 9.4973 8.1023 4.9503 22 14 8.7431 9.9940 6.8288 23 1 8.1475 9.5590 8.1177 24 1 10.2006 10.2158 7.0072 25 1 8.1000 11.2578 6.3878 26 6 1.9212 3.6047 -0.0021 27 6 1.2916 2.3751 -0.0016 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0208 0.3798 0.0016 32 1 5.1346 2.5749 0.0050 33 1 2.3207 6.0811 -0.4479 34 1 3.1101 5.6310 1.8676 35 1 4.6900 4.8262 2.0243 36 1 5.2475 7.1372 0.6433 37 1 4.8298 5.0856 4.4512 38 1 5.2919 6.0827 5.8514 39 1 3.7765 6.4195 4.9804 40 1 7.4354 6.2993 4.4835 41 1 7.4009 7.5466 3.2140 42 1 10.3994 8.3684 5.1874 43 1 1.3343 4.5113 -0.0038 44 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751221084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:01 Heat of formation + Delta-G solvation = -134.401669 kcal Electronic energy + Delta-G solvation = -28113.128449 eV Core-core repulsion = 23964.968727 eV Total energy + Delta-G solvation = -4148.159722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59811 -38.87432 -36.83592 -36.54514 -35.48884 -35.14658 -34.32316 -32.42412 -31.42370 -31.26205 -28.20414 -27.77263 -26.97531 -25.05590 -23.63706 -22.78666 -22.28277 -21.35884 -18.95756 -18.61805 -17.51049 -17.35422 -16.78784 -16.66175 -16.38567 -16.11186 -15.68192 -15.34481 -15.26114 -14.89822 -14.47520 -14.19793 -13.98524 -13.80482 -13.42695 -13.28844 -13.18354 -12.94899 -12.69916 -12.31509 -12.28115 -12.14636 -11.80196 -11.65387 -11.54287 -11.40896 -11.21534 -11.16217 -11.08249 -11.05029 -10.71017 -10.49277 -10.35047 -10.03105 -9.78073 -9.35686 -9.30451 -8.46129 -8.43250 -8.06735 -6.05670 -4.09639 0.99342 1.02136 1.26451 2.89435 3.34332 3.35068 3.37945 3.42592 3.53560 4.08942 4.25377 4.37746 4.40830 4.45700 4.52565 4.67020 4.74061 4.74300 4.91621 5.02179 5.05256 5.07001 5.15062 5.29251 5.31111 5.44765 5.58550 5.65003 5.71998 5.85397 5.93966 5.98659 6.03730 6.26161 6.29589 6.38876 6.55801 7.01222 7.11001 7.26419 7.37327 7.43812 7.61907 7.91780 8.21170 8.92413 9.55472 11.02914 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.002444 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.117156 B =11454.773164 C =11892.843126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.149 4.149 5 C -0.066 4.066 6 C -0.153 4.153 7 C 0.148 3.852 8 H 0.116 0.884 9 O -0.549 6.549 10 C 0.094 3.906 11 N -1.128 6.128 12 S 2.784 3.216 13 O -0.963 6.963 14 O -1.000 7.000 15 N -0.996 5.996 16 C 0.094 3.906 17 C 0.258 3.742 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.069 4.069 27 C -0.205 4.205 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.375 0.625 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.264 0.736 43 H 0.126 0.874 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.390 -16.372 -11.502 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.167 4.167 5 C -0.084 4.084 6 C -0.154 4.154 7 C 0.087 3.913 8 H 0.133 0.867 9 O -0.354 6.354 10 C -0.033 4.033 11 N -0.888 5.888 12 S 2.791 3.209 13 O -0.946 6.946 14 O -0.984 6.984 15 N -0.839 5.839 16 C -0.052 4.052 17 C 0.136 3.864 18 C -0.569 4.569 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.087 4.087 27 C -0.224 4.224 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.223 0.777 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.087 -15.756 -11.606 25.332 hybrid contribution -0.093 0.425 0.764 0.879 sum -16.180 -15.331 -10.842 24.786 Atomic orbital electron populations 1.23073 0.78273 1.04018 1.01466 1.86074 1.21497 1.26975 1.88639 1.19082 0.92445 0.84161 0.96158 1.20438 0.91366 0.98738 1.06194 1.20855 1.00161 0.90737 0.96626 1.20376 0.94193 0.95831 1.05002 1.20946 0.95359 0.84266 0.90683 0.86663 1.86628 1.29311 1.64115 1.55385 1.21876 0.98323 0.85357 0.97764 1.56139 1.68756 1.31121 1.32762 1.01880 0.73015 0.73343 0.72664 1.93648 1.71787 1.45161 1.84035 1.93509 1.35538 1.86865 1.82451 1.57604 1.21357 1.60140 1.44811 1.21365 0.96539 0.91505 0.95833 1.19047 0.72553 0.97115 0.97724 1.21453 0.92370 1.20969 1.22092 0.92244 1.24935 0.95846 0.96593 0.96673 1.69910 0.98549 1.42570 1.42483 0.86570 0.76976 0.82339 0.81635 1.20198 1.21176 1.19983 1.20684 0.93818 0.97280 0.96898 1.21188 1.00100 0.92184 1.08881 0.92611 0.88198 0.92491 0.84943 0.84757 0.77717 0.90349 0.90757 0.75082 0.94422 0.90369 0.91629 0.94731 0.94405 0.92638 0.85663 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.83 10.50 -19.42 -0.20 -3.04 16 3 C 0.13 1.18 6.69 -39.22 -0.26 0.92 16 4 C -0.15 -1.35 9.99 -39.44 -0.39 -1.74 16 5 C -0.07 -0.58 9.67 -39.61 -0.38 -0.96 16 6 C -0.15 -1.40 5.01 -104.60 -0.52 -1.93 16 7 C 0.15 1.44 3.30 -27.88 -0.09 1.35 16 8 H 0.12 1.06 8.05 -51.93 -0.42 0.65 16 9 O -0.55 -5.69 13.00 -35.23 -0.46 -6.15 16 10 C 0.09 1.08 5.89 -4.04 -0.02 1.06 16 11 N -1.13 -16.24 5.92 -10.61 -0.06 -16.30 16 12 S 2.78 54.25 6.10 -107.50 -0.66 53.59 16 13 O -0.96 -23.04 17.11 -57.17 -0.98 -24.02 16 14 O -1.00 -20.32 16.21 -57.17 -0.93 -21.24 16 15 N -1.00 -20.33 3.23 -123.05 -0.40 -20.73 16 16 C 0.09 1.59 10.68 59.85 0.64 2.22 16 17 C 0.26 6.41 5.08 -5.19 -0.03 6.39 16 18 C -0.53 -14.89 9.38 -34.44 -0.32 -15.21 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 22 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.07 -0.58 9.32 -39.61 -0.37 -0.95 16 27 C -0.20 -1.71 9.04 -39.43 -0.36 -2.06 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.37 2.87 7.39 45.56 0.34 3.20 16 34 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.42 5.53 8.65 -34.47 -0.30 5.23 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 40 H 0.03 0.87 8.11 -51.92 -0.42 0.45 16 41 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.13 0.82 6.61 -52.49 -0.35 0.47 16 44 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -36.17 383.07 -8.93 -45.10 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.51 Total: 3.66 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.22 Total: -8.13 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.28 Total: -62.45 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -2.57 Total: -54.45 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 54.25 SS G_CDS: -0.66 Total: 53.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.17 -8.93 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751221084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.305 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds