Wall clock time and date at job start Wed Apr 1 2020 02:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 24.99833 * 7 6 5 9 9 O 1.42892 * 109.47670 * 145.00283 * 7 6 5 10 10 C 1.53003 * 109.47168 * 265.00338 * 7 6 5 11 11 N 1.46500 * 109.47410 * 179.97438 * 10 7 6 12 12 S 1.65598 * 120.00170 * 164.99746 * 11 10 7 13 13 O 1.42102 * 106.40251 * 178.54108 * 12 11 10 14 14 O 1.42098 * 106.40171 * 311.46203 * 12 11 10 15 15 N 1.65603 * 107.21742 * 65.00081 * 12 11 10 16 16 C 1.46500 * 119.99880 * 269.99988 * 15 12 11 17 17 C 1.46500 * 120.00113 * 90.00104 * 15 12 11 18 18 C 1.50697 * 109.47090 * 95.00169 * 17 15 12 19 19 H 1.07994 * 119.99982 * 359.97438 * 18 17 15 20 20 C 1.37874 * 119.99757 * 180.02562 * 18 17 15 21 21 N 1.31521 * 120.00150 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46941 * 59.99795 * 22 20 18 24 24 H 1.48504 * 109.47125 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47224 * 299.99816 * 22 20 18 26 26 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 27 27 C 1.38143 * 120.05412 * 359.97438 * 26 6 5 28 28 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 29 29 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 31 31 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 32 32 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 33 33 H 0.96697 * 114.00414 * 59.99380 * 9 7 6 34 34 H 1.09004 * 109.47076 * 300.00052 * 10 7 6 35 35 H 1.09005 * 109.47386 * 59.99548 * 10 7 6 36 36 H 0.97003 * 119.99764 * 345.00108 * 11 10 7 37 37 H 1.09002 * 109.47426 * 90.00361 * 16 15 12 38 38 H 1.08997 * 109.46949 * 210.00093 * 16 15 12 39 39 H 1.09005 * 109.47262 * 330.00186 * 16 15 12 40 40 H 1.09008 * 109.46951 * 214.99939 * 17 15 12 41 41 H 1.09003 * 109.46914 * 334.99735 * 17 15 12 42 42 H 0.96997 * 119.99572 * 180.02562 * 21 20 18 43 43 H 1.08001 * 119.97543 * 180.02562 * 26 6 5 44 44 H 1.08001 * 120.02739 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 4.9812 4.9189 -0.4365 9 8 3.2195 5.9431 -0.7768 10 6 4.1051 5.5315 1.4338 11 7 4.7707 6.8365 1.4327 12 16 4.7092 7.7985 2.7793 13 8 5.4675 8.9615 2.4766 14 8 3.3465 7.8416 3.1796 15 7 5.5257 7.0082 3.9840 16 6 4.8102 6.0903 4.8737 17 6 6.9635 7.2271 4.1600 18 6 7.1855 8.2933 5.2016 19 1 6.3402 8.7613 5.6839 20 6 8.4678 8.6719 5.5381 21 7 9.4973 8.1023 4.9503 22 14 8.7431 9.9940 6.8288 23 1 8.1475 9.5590 8.1177 24 1 10.2006 10.2158 7.0072 25 1 8.1000 11.2578 6.3878 26 6 1.9212 3.6047 -0.0021 27 6 1.2916 2.3751 -0.0016 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0208 0.3798 0.0016 32 1 5.1346 2.5749 0.0050 33 1 2.3207 6.0811 -0.4479 34 1 3.1101 5.6310 1.8676 35 1 4.6900 4.8262 2.0243 36 1 5.2475 7.1372 0.6433 37 1 4.8298 5.0856 4.4512 38 1 5.2919 6.0827 5.8514 39 1 3.7765 6.4195 4.9804 40 1 7.4354 6.2993 4.4835 41 1 7.4009 7.5466 3.2140 42 1 10.3994 8.3684 5.1874 43 1 1.3343 4.5113 -0.0038 44 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751221084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:00 Heat of formation + Delta-G solvation = -163.685738 kcal Electronic energy + Delta-G solvation = -28114.398301 eV Core-core repulsion = 23964.968727 eV Total energy + Delta-G solvation = -4149.429575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21824 -39.57719 -38.25995 -37.49773 -37.19876 -36.82977 -35.38861 -34.48912 -32.03503 -31.98092 -29.65553 -28.82858 -27.66707 -26.75518 -24.43292 -24.19318 -23.41916 -22.07140 -20.36423 -19.24867 -18.97437 -18.45513 -18.40341 -18.06703 -17.39301 -17.14450 -16.65391 -16.56901 -16.17133 -16.02255 -15.73091 -15.20660 -15.04255 -14.91992 -14.59453 -14.43485 -14.07090 -13.95875 -13.80414 -13.63263 -13.51836 -13.31890 -13.11612 -13.04429 -13.00457 -12.91401 -12.78380 -12.46883 -12.37139 -12.35250 -11.95736 -11.80823 -11.76568 -11.69655 -11.18563 -10.59838 -10.47573 -9.96104 -9.77760 -9.10433 -8.19699 -6.31334 -0.30687 0.37118 0.39261 1.39581 1.43135 1.50175 2.06373 2.38872 2.41038 2.64902 2.73483 3.11228 3.45341 3.49697 3.70608 3.80785 3.86918 3.96625 4.09654 4.17746 4.30120 4.40316 4.42332 4.50273 4.52445 4.65988 4.74544 4.74960 4.79610 4.86408 4.94072 5.08612 5.08913 5.21375 5.26115 5.37137 5.47636 5.60576 5.70561 5.78557 5.87198 6.09868 6.16522 6.44135 6.73466 6.76702 7.37290 8.87562 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.002444 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.117156 B =11454.773164 C =11892.843126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.115 3.885 4 C -0.164 4.164 5 C -0.070 4.070 6 C -0.162 4.162 7 C 0.158 3.842 8 H 0.120 0.880 9 O -0.561 6.561 10 C 0.087 3.913 11 N -1.114 6.114 12 S 2.801 3.199 13 O -1.013 7.013 14 O -1.008 7.008 15 N -1.003 6.003 16 C 0.087 3.913 17 C 0.272 3.728 18 C -0.550 4.550 19 H 0.051 0.949 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.955 3.045 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.278 1.278 26 C -0.074 4.074 27 C -0.209 4.209 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.386 0.614 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.422 0.578 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.017 0.983 42 H 0.267 0.733 43 H 0.143 0.857 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.616 -17.197 -11.457 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.069 3.931 4 C -0.183 4.183 5 C -0.088 4.088 6 C -0.163 4.163 7 C 0.098 3.902 8 H 0.138 0.862 9 O -0.369 6.369 10 C -0.040 4.040 11 N -0.877 5.877 12 S 2.809 3.191 13 O -0.997 6.997 14 O -0.992 6.992 15 N -0.845 5.845 16 C -0.058 4.058 17 C 0.148 3.852 18 C -0.589 4.589 19 H 0.069 0.931 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.780 3.220 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.204 1.204 26 C -0.092 4.092 27 C -0.228 4.228 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.236 0.764 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.258 0.742 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.161 0.839 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.347 -16.596 -11.547 26.640 hybrid contribution 0.169 0.572 0.684 0.907 sum -17.179 -16.024 -10.863 25.882 Atomic orbital electron populations 1.23334 0.76512 1.05524 1.02248 1.86051 1.23433 1.27013 1.88599 1.19317 0.92810 0.84733 0.96193 1.20639 0.91752 0.99202 1.06658 1.21049 1.00966 0.90565 0.96233 1.20346 0.94590 0.95377 1.05984 1.20833 0.95759 0.84399 0.89259 0.86218 1.86609 1.30264 1.64298 1.55722 1.22182 0.98436 0.83789 0.99552 1.55664 1.68948 1.31934 1.31138 1.01121 0.72277 0.72779 0.72958 1.93576 1.72845 1.48373 1.84868 1.93492 1.35597 1.87061 1.83027 1.57479 1.19637 1.60991 1.46353 1.21600 0.96344 0.92671 0.95220 1.18604 0.74954 0.95859 0.95748 1.21816 0.92379 1.21866 1.22887 0.93061 1.25743 0.95726 0.98664 0.98687 1.69998 0.98911 1.43753 1.43649 0.85655 0.77341 0.79375 0.79625 1.18820 1.20130 1.20365 1.20961 0.93834 0.98135 0.96292 1.21425 1.01147 0.91787 1.08413 0.91694 0.86482 0.91767 0.84370 0.83463 0.76432 0.89771 0.89686 0.74208 0.90824 0.91215 0.90665 0.95214 0.96496 0.92370 0.83889 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.62 10.50 -92.40 -0.97 -6.59 16 3 C 0.11 2.00 6.69 22.50 0.15 2.15 16 4 C -0.16 -2.82 9.99 22.36 0.22 -2.59 16 5 C -0.07 -1.13 9.67 22.25 0.22 -0.91 16 6 C -0.16 -2.67 5.01 -19.85 -0.10 -2.77 16 7 C 0.16 2.78 3.30 29.85 0.10 2.88 16 8 H 0.12 1.99 8.05 -2.39 -0.02 1.97 16 9 O -0.56 -10.58 13.00 -148.98 -1.94 -12.51 16 10 C 0.09 1.82 5.89 86.38 0.51 2.33 16 11 N -1.11 -30.78 5.92 -187.48 -1.11 -31.89 16 12 S 2.80 108.01 6.10 -56.49 -0.34 107.67 16 13 O -1.01 -49.25 17.11 -128.00 -2.19 -51.44 16 14 O -1.01 -39.84 16.21 -128.00 -2.07 -41.91 16 15 N -1.00 -40.48 3.23 -543.21 -1.75 -42.23 16 16 C 0.09 2.80 10.68 127.77 1.36 4.16 16 17 C 0.27 13.69 5.08 85.63 0.43 14.13 16 18 C -0.55 -31.24 9.38 25.60 0.24 -31.00 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 20 C 0.01 0.65 5.46 84.65 0.46 1.11 16 21 N -0.92 -54.20 13.29 21.45 0.28 -53.91 16 22 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C -0.07 -1.11 9.32 22.25 0.21 -0.90 16 27 C -0.21 -3.10 9.04 22.37 0.20 -2.90 16 28 H 0.06 0.43 7.66 -2.38 -0.02 0.41 16 29 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.45 7.67 -2.39 -0.02 0.43 16 31 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.39 5.08 7.39 -74.06 -0.55 4.54 16 34 H 0.08 1.70 7.75 -2.38 -0.02 1.68 16 35 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.42 10.86 8.65 -96.74 -0.84 10.02 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 39 H 0.07 2.27 7.02 -2.38 -0.02 2.25 16 40 H 0.03 1.51 8.11 -2.38 -0.02 1.49 16 41 H 0.02 0.92 7.61 -2.39 -0.02 0.90 16 42 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.14 1.51 6.61 -2.91 -0.02 1.49 16 44 H 0.15 1.50 6.30 -2.91 -0.02 1.48 16 Total: -1.00 -77.14 383.07 -3.29 -80.43 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.35 Total: 18.59 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 5.12 Total: -13.04 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -2.58 Total: -128.03 kcal Atomic # 8 Polarization: -105.28 SS G_CDS: -7.17 Total: -112.46 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 108.01 SS G_CDS: -0.34 Total: 107.67 kcal Total: -77.14 -3.29 -80.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751221084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.254 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds