Wall clock time and date at job start Wed Apr 1 2020 02:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36836 * 119.68933 * 2 1 4 4 C 1.50698 * 120.15646 * 359.94926 * 3 2 1 5 5 O 1.45198 * 109.46947 * 180.02562 * 4 3 2 6 6 C 1.34773 * 117.00196 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.47505 * 120.00343 * 179.72426 * 6 5 4 9 9 C 1.40063 * 119.89946 * 359.97438 * 8 6 5 10 10 C 1.36309 * 120.10143 * 179.75694 * 9 8 6 11 11 C 1.40901 * 119.89528 * 0.53741 * 10 9 8 12 12 C 1.41086 * 120.09816 * 179.68908 * 11 10 9 13 13 H 1.07999 * 120.00251 * 205.09460 * 12 11 10 14 14 C 1.40246 * 119.99824 * 25.09762 * 12 11 10 15 15 N 1.30634 * 120.00029 * 18.01792 * 14 12 11 16 16 Si 1.86803 * 119.99938 * 198.01160 * 14 12 11 17 17 H 1.48503 * 109.46777 * 94.52966 * 16 14 12 18 18 H 1.48505 * 109.47156 * 214.52853 * 16 14 12 19 19 H 1.48502 * 109.47171 * 334.53075 * 16 14 12 20 20 C 1.40898 * 119.80174 * 359.71995 * 11 10 9 21 21 C 1.36302 * 119.89938 * 359.97438 * 20 11 10 22 22 C 1.35022 * 119.68213 * 180.22824 * 3 2 1 23 23 C 1.41573 * 119.11915 * 359.46775 * 22 3 2 24 24 O 1.21776 * 120.31229 * 180.31520 * 23 22 3 25 25 N 1.34843 * 119.37914 * 0.54960 * 23 22 3 26 26 C 1.46505 * 119.86435 * 179.73779 * 25 23 22 27 27 C 1.34549 * 119.69170 * 179.97438 * 2 1 3 28 28 O 1.21581 * 119.53345 * 0.02562 * 27 2 1 29 29 H 1.09007 * 109.46497 * 90.00745 * 1 2 3 30 30 H 1.08997 * 109.46814 * 210.00067 * 1 2 3 31 31 H 1.08993 * 109.47360 * 330.00737 * 1 2 3 32 32 H 1.08992 * 109.47026 * 60.00263 * 4 3 2 33 33 H 1.08996 * 109.46900 * 300.00002 * 4 3 2 34 34 H 1.07993 * 119.94989 * 0.02562 * 9 8 6 35 35 H 1.07996 * 120.04993 * 180.25593 * 10 9 8 36 36 H 0.96995 * 120.00163 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.05307 * 179.97438 * 20 11 10 38 38 H 1.08003 * 119.94516 * 180.02562 * 21 20 11 39 39 H 1.07999 * 120.43976 * 179.72385 * 22 3 2 40 40 H 1.08994 * 109.47332 * 269.97886 * 26 25 23 41 41 H 1.08997 * 109.46851 * 29.98348 * 26 25 23 42 42 H 1.09005 * 109.46736 * 149.97813 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.1887 0.0000 4 6 1.3857 2.4918 -0.0012 5 8 2.3263 3.5979 -0.0015 6 6 1.8079 4.8419 -0.0031 7 8 0.6029 4.9980 -0.0046 8 6 2.7033 6.0141 0.0026 9 6 4.0920 5.8319 0.0101 10 6 4.9233 6.9122 0.0104 11 6 4.3834 8.2137 0.0145 12 6 5.2399 9.3349 0.0214 13 1 4.8936 10.2765 0.4212 14 6 6.5409 9.2266 -0.4909 15 7 6.8518 8.2324 -1.2793 16 14 7.8292 10.5040 -0.0460 17 1 8.6180 10.0269 1.1182 18 1 8.7349 10.7176 -1.2034 19 1 7.1590 11.7830 0.3008 20 6 2.9858 8.3921 0.0124 21 6 2.1622 7.3061 0.0058 22 6 3.4929 1.1886 -0.0047 23 6 4.1817 -0.0483 0.0020 24 8 5.3992 -0.0738 0.0037 25 7 3.4771 -1.1979 0.0016 26 6 4.1790 -2.4839 0.0026 27 6 2.1315 -1.1688 0.0005 28 8 1.5094 -2.2134 0.0005 29 1 -0.3632 -0.0001 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 0.7583 2.5482 0.8883 33 1 0.7596 2.5474 -0.8916 34 1 4.5048 4.8340 0.0114 35 1 5.9939 6.7707 0.0121 36 1 7.7515 8.1577 -1.6339 37 1 2.5677 9.3879 0.0159 38 1 1.0908 7.4420 0.0037 39 1 4.0402 2.1196 -0.0092 40 1 4.3538 -2.8032 -1.0247 41 1 5.1338 -2.3761 0.5171 42 1 3.5715 -3.2290 0.5164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758684675.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:52 Heat of formation + Delta-G solvation = -96.869280 kcal Electronic energy + Delta-G solvation = -28897.410616 eV Core-core repulsion = 24615.434469 eV Total energy + Delta-G solvation = -4281.976147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59541 -39.93865 -39.21623 -38.04809 -37.43101 -35.84220 -35.43081 -34.04033 -32.33902 -30.64382 -29.79328 -29.59964 -27.31526 -26.88254 -26.00388 -23.66967 -23.01526 -22.04804 -21.05689 -20.29839 -19.25290 -18.08029 -17.64373 -17.52229 -17.16818 -16.93085 -16.29164 -16.19693 -15.75340 -15.49624 -15.09845 -14.97743 -14.16313 -14.03932 -13.93375 -13.87129 -13.43798 -13.26620 -13.19955 -13.00566 -12.77965 -12.55118 -12.38393 -12.19652 -11.92153 -11.63192 -11.47609 -11.37973 -11.17738 -11.06288 -10.79961 -10.57192 -10.40791 -10.22836 -10.01072 -9.73255 -9.61661 -9.46419 -8.73681 -7.85016 -7.73831 -7.17798 -4.76302 0.71406 1.55736 1.73828 1.90788 2.50551 2.81092 2.89271 2.92593 2.95367 3.10948 3.23519 3.48361 3.65080 3.88963 4.29650 4.36823 4.67907 4.78194 4.83656 4.94989 5.00682 5.09878 5.15731 5.21888 5.30250 5.41170 5.42363 5.49959 5.72985 5.82315 6.10664 6.15337 6.30709 6.65579 6.71580 6.75271 6.88678 6.93871 6.98625 7.25083 7.32477 7.56251 7.68020 7.68304 7.74412 7.91896 8.26755 8.47725 8.49619 8.60389 9.73397 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.002429 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.949234 B =11522.429976 C =13206.811264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.530 5.530 3 C 0.186 3.814 4 C 0.105 3.895 5 O -0.350 6.350 6 C 0.519 3.481 7 O -0.550 6.550 8 C -0.278 4.278 9 C -0.042 4.042 10 C -0.183 4.183 11 C 0.131 3.869 12 C -0.430 4.430 13 H 0.089 0.911 14 C 0.072 3.928 15 N -0.759 5.759 16 Si 0.916 3.084 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.239 4.239 21 C -0.015 4.015 22 C -0.264 4.264 23 C 0.547 3.453 24 O -0.508 6.508 25 N -0.559 5.559 26 C 0.080 3.920 27 C 0.699 3.301 28 O -0.543 6.543 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.291 0.709 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.185 0.815 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -13.162 1.753 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.253 5.253 3 C 0.082 3.918 4 C 0.030 3.970 5 O -0.267 6.267 6 C 0.373 3.627 7 O -0.444 6.444 8 C -0.281 4.281 9 C -0.061 4.061 10 C -0.203 4.203 11 C 0.128 3.872 12 C -0.456 4.456 13 H 0.107 0.893 14 C -0.151 4.151 15 N -0.381 5.381 16 Si 0.740 3.260 17 H -0.188 1.188 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.258 4.258 21 C -0.034 4.034 22 C -0.290 4.290 23 C 0.343 3.657 24 O -0.383 6.383 25 N -0.304 5.304 26 C -0.061 4.061 27 C 0.402 3.598 28 O -0.417 6.417 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.202 0.798 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.046 -13.937 1.590 15.275 hybrid contribution 0.442 0.452 -0.009 0.632 sum -5.604 -13.485 1.581 14.689 Atomic orbital electron populations 1.22191 0.74740 1.05584 1.04505 1.44422 1.09410 1.03451 1.67985 1.20348 0.92771 0.86628 0.92100 1.21407 0.90162 0.81114 1.04366 1.86593 1.38981 1.15020 1.86149 1.21632 0.87613 0.81476 0.72002 1.90719 1.16610 1.86133 1.50893 1.18099 0.92024 0.88716 1.29213 1.20642 0.91882 0.98091 0.95449 1.21012 0.99528 0.91634 1.08081 1.17867 0.91401 0.93187 0.84752 1.19987 0.95904 0.97913 1.31843 0.89328 1.26182 0.99737 0.96703 0.92499 1.69728 1.21787 1.27698 1.18843 0.86143 0.79608 0.80902 0.79396 1.18787 1.19807 1.18110 1.20688 0.93518 0.96746 1.14870 1.20332 0.98128 0.91016 0.93933 1.21936 0.92348 0.99407 1.15319 1.17403 0.88092 0.83583 0.76575 1.90892 1.12666 1.86976 1.47756 1.46430 1.05882 1.10970 1.67095 1.21895 0.98126 0.82170 1.03905 1.15705 0.81755 0.83685 0.78633 1.90999 1.66160 1.29581 1.54914 0.90151 0.88316 0.88968 0.88387 0.88341 0.87907 0.86045 0.89803 0.87994 0.87903 0.79793 0.90862 0.88801 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.95 59.85 0.60 1.07 16 2 N -0.53 -5.38 3.01 -124.34 -0.37 -5.75 16 3 C 0.19 2.07 6.68 -81.50 -0.54 1.53 16 4 C 0.10 1.20 4.53 36.00 0.16 1.37 16 5 O -0.35 -5.56 7.91 -40.69 -0.32 -5.88 16 6 C 0.52 10.00 7.89 34.51 0.27 10.27 16 7 O -0.55 -11.11 16.11 -19.27 -0.31 -11.42 16 8 C -0.28 -5.97 5.89 -104.75 -0.62 -6.59 16 9 C -0.04 -0.91 9.55 -39.59 -0.38 -1.28 16 10 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16 11 C 0.13 3.17 5.57 -106.80 -0.59 2.58 16 12 C -0.43 -10.10 9.04 -37.75 -0.34 -10.44 16 13 H 0.09 1.97 7.91 -52.49 -0.42 1.55 16 14 C 0.07 1.60 5.13 -17.31 -0.09 1.51 16 15 N -0.76 -17.45 10.99 55.56 0.61 -16.83 16 16 Si 0.92 16.45 29.60 -169.99 -5.03 11.42 16 17 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 18 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 20 C -0.24 -5.39 9.73 -39.27 -0.38 -5.77 16 21 C -0.02 -0.33 9.52 -39.59 -0.38 -0.71 16 22 C -0.26 -3.47 9.34 -39.45 -0.37 -3.84 16 23 C 0.55 7.71 7.44 -14.96 -0.11 7.60 16 24 O -0.51 -8.57 16.70 5.12 0.09 -8.48 16 25 N -0.56 -6.85 2.96 -131.49 -0.39 -7.24 16 26 C 0.08 0.77 10.13 59.85 0.61 1.38 16 27 C 0.70 8.41 8.12 -87.29 -0.71 7.70 16 28 O -0.54 -7.26 15.35 5.29 0.08 -7.18 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.65 7.37 -51.93 -0.38 0.27 16 31 H 0.09 0.45 6.48 -51.93 -0.34 0.11 16 32 H 0.10 0.98 7.42 -51.93 -0.39 0.60 16 33 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16 34 H 0.10 2.02 7.59 -52.49 -0.40 1.62 16 35 H 0.12 2.93 6.19 -52.49 -0.33 2.60 16 36 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.10 2.10 7.63 -52.48 -0.40 1.70 16 39 H 0.18 2.59 6.96 -52.49 -0.37 2.22 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 42 H 0.09 0.78 7.39 -51.93 -0.38 0.40 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -29.38 364.21 -7.98 -37.36 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.60 Total: 6.83 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.21 Total: 1.69 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: -0.15 Total: -29.83 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.47 Total: -32.96 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.38 -7.98 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758684675.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.509 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds