Wall clock time and date at job start Wed Apr 1 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00094 * 2 1 4 4 O 1.20821 * 120.00135 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99985 * 180.02562 * 3 2 1 6 6 O 1.45198 * 109.46862 * 180.02562 * 5 3 2 7 7 C 1.34813 * 116.99856 * 179.97438 * 6 5 3 8 8 O 1.21557 * 119.99411 * 0.27536 * 7 6 5 9 9 C 1.47016 * 119.99832 * 179.97438 * 7 6 5 10 10 C 1.41142 * 126.49669 * 0.02655 * 9 7 6 11 11 N 1.30442 * 108.29657 * 179.97438 * 10 9 7 12 12 N 1.39907 * 109.23634 * 0.02562 * 11 10 9 13 13 C 1.46501 * 125.79307 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47292 * 89.97436 * 13 12 11 15 15 H 1.07997 * 119.99829 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00429 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99782 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47273 * 59.99602 * 18 16 14 20 20 H 1.48504 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46841 * 299.99384 * 18 16 14 22 22 C 1.35152 * 108.41083 * 359.75955 * 12 11 10 23 23 C 1.47727 * 126.47851 * 180.23090 * 22 12 11 24 24 C 1.39621 * 120.14516 * 314.91952 * 23 22 12 25 25 C 1.37950 * 119.84105 * 179.72329 * 24 23 22 26 26 C 1.38363 * 120.15217 * 0.52797 * 25 24 23 27 27 C 1.38369 * 120.30099 * 359.77078 * 26 25 24 28 28 C 1.37945 * 120.15160 * 359.95066 * 27 26 25 29 29 H 1.09000 * 109.47147 * 59.99859 * 1 2 3 30 30 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47475 * 299.99653 * 1 2 3 32 32 H 1.08994 * 109.47313 * 60.00298 * 5 3 2 33 33 H 1.09006 * 109.46774 * 299.99942 * 5 3 2 34 34 H 1.08004 * 125.85287 * 359.94867 * 10 9 7 35 35 H 1.09000 * 109.46848 * 209.96952 * 13 12 11 36 36 H 1.08993 * 109.47383 * 329.97081 * 13 12 11 37 37 H 0.97002 * 120.00581 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.08109 * 359.97438 * 24 23 22 39 39 H 1.07997 * 119.92511 * 180.27590 * 25 24 23 40 40 H 1.07998 * 119.84905 * 179.74269 * 26 25 24 41 41 H 1.07995 * 119.92575 * 179.97438 * 27 26 25 42 42 H 1.07996 * 120.07646 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 8 3.9780 2.6672 0.0001 7 6 5.3034 2.9135 0.0003 8 8 6.0932 1.9895 -0.0053 9 6 5.7934 4.2996 0.0004 10 6 5.0035 5.4693 0.0010 11 7 5.8006 6.5018 0.0015 12 7 7.1279 6.0594 0.0007 13 6 8.3165 6.9158 0.0015 14 6 8.7240 7.2083 1.4226 15 1 8.1543 6.7977 2.2431 16 6 9.8235 8.0010 1.6752 17 7 10.5169 8.5014 0.6761 18 14 10.3290 8.3630 3.4368 19 1 10.6369 7.0891 4.1351 20 1 11.5338 9.2312 3.4375 21 1 9.2184 9.0560 4.1379 22 6 7.1274 4.7079 0.0051 23 6 8.3149 3.8292 0.0107 24 6 9.3877 4.0947 -0.8425 25 6 10.4959 3.2733 -0.8280 26 6 10.5412 2.1822 0.0217 27 6 9.4789 1.9098 0.8654 28 6 8.3669 2.7262 0.8653 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 3.9240 5.5035 0.0006 35 1 9.1316 6.4065 -0.5126 36 1 8.0911 7.8506 -0.5116 37 1 11.2907 9.0588 0.8538 38 1 9.3517 4.9433 -1.5094 39 1 11.3283 3.4800 -1.4842 40 1 11.4095 1.5400 0.0261 41 1 9.5205 1.0564 1.5259 42 1 7.5387 2.5127 1.5246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759071454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:56 Heat of formation + Delta-G solvation = -61.255158 kcal Electronic energy + Delta-G solvation = -29316.257384 eV Core-core repulsion = 25035.825582 eV Total energy + Delta-G solvation = -4280.431803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10139 -40.74158 -39.62281 -38.42451 -36.90338 -36.05256 -33.96358 -32.26761 -31.59181 -30.54667 -30.18408 -28.65762 -27.65101 -27.06719 -24.11767 -22.91851 -22.27692 -22.14332 -21.39655 -20.27385 -19.30194 -18.12056 -17.41206 -17.23722 -17.21341 -16.82897 -16.55718 -16.02863 -15.76321 -15.41241 -14.80958 -14.72890 -14.12792 -14.03530 -13.84173 -13.64008 -13.45853 -13.20170 -13.01980 -12.83757 -12.65236 -12.41707 -12.29682 -12.19508 -11.76104 -11.18760 -11.16277 -11.13782 -10.96486 -10.89335 -10.75058 -10.63748 -10.51536 -10.38928 -10.00891 -9.91711 -9.23709 -8.72019 -8.49421 -8.30892 -7.97085 -6.35256 -4.42541 1.18839 1.77134 1.82715 1.84821 2.04187 2.63260 2.98434 3.19975 3.23481 3.27088 3.36797 3.53626 4.22300 4.23223 4.37061 4.75765 4.77771 4.78679 4.82143 4.86890 4.98548 5.09719 5.17283 5.24042 5.26835 5.35056 5.42675 5.67090 5.80869 5.82282 5.95826 6.03218 6.23683 6.35547 6.45427 6.58784 6.76948 6.81168 6.85164 6.88343 7.04277 7.28669 7.39092 7.45699 7.65298 7.73230 7.98510 8.23154 8.60539 9.23878 10.73108 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003006 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.628378 B = 9313.868720 C =10568.351339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.482 6.482 5 C 0.079 3.921 6 O -0.337 6.337 7 C 0.553 3.447 8 O -0.515 6.515 9 C -0.304 4.304 10 C 0.085 3.915 11 N -0.289 5.289 12 N -0.300 5.300 13 C 0.245 3.755 14 C -0.539 4.539 15 H 0.065 0.935 16 C 0.070 3.930 17 N -0.889 5.889 18 Si 0.907 3.093 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.209 3.791 23 C -0.036 4.036 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.108 4.108 27 C -0.131 4.131 28 C -0.044 4.044 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.190 0.810 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.270 0.730 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 -17.331 -2.712 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.367 6.367 5 C 0.004 3.996 6 O -0.254 6.254 7 C 0.400 3.600 8 O -0.404 6.404 9 C -0.317 4.317 10 C -0.102 4.102 11 N -0.109 5.109 12 N -0.075 5.075 13 C 0.128 3.872 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.134 4.134 17 N -0.526 5.526 18 Si 0.733 3.267 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C 0.071 3.929 23 C -0.038 4.038 24 C -0.101 4.101 25 C -0.145 4.145 26 C -0.127 4.127 27 C -0.149 4.149 28 C -0.064 4.064 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.207 0.793 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.671 -15.716 -2.776 18.661 hybrid contribution 0.002 -0.568 0.937 1.096 sum -9.669 -16.285 -1.839 19.028 Atomic orbital electron populations 1.23323 0.75432 1.03931 1.02919 1.86449 1.23971 1.32519 1.84475 1.23097 0.91135 0.81889 0.73528 1.90732 1.66664 1.36091 1.43201 1.21938 0.87985 0.83150 1.06571 1.86582 1.26822 1.26449 1.85577 1.20001 0.78852 0.89020 0.72132 1.90859 1.55540 1.45877 1.48128 1.18825 0.91629 0.90552 1.30709 1.23949 1.00099 0.88587 0.97532 1.77237 0.87056 1.23066 1.23535 1.49751 1.07067 1.03478 1.47193 1.20127 0.77212 0.89847 0.99990 1.21149 1.13043 1.32861 0.90702 0.91694 1.24876 0.95474 0.94744 0.98295 1.69888 1.18525 1.32997 1.31171 0.86394 0.78121 0.78594 0.83544 1.19813 1.20819 1.19835 1.19712 0.92646 0.85144 0.95378 1.17858 0.91760 0.95147 0.99064 1.21254 0.92520 0.98531 0.97842 1.20936 0.97894 0.95547 1.00095 1.21177 0.98221 0.97282 0.95996 1.20934 0.93882 0.99989 1.00109 1.21033 0.96973 0.92088 0.96267 0.91616 0.87753 0.91598 0.86820 0.86823 0.79327 0.91818 0.92140 0.92024 0.85730 0.85935 0.86352 0.86141 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.25 10.56 -39.24 -0.41 -3.66 16 3 C 0.46 5.19 8.04 36.01 0.29 5.48 16 4 O -0.48 -6.98 16.25 -25.40 -0.41 -7.39 16 5 C 0.08 0.84 6.07 36.01 0.22 1.06 16 6 O -0.34 -4.89 9.60 -47.50 -0.46 -5.35 16 7 C 0.55 9.11 7.83 34.29 0.27 9.38 16 8 O -0.51 -8.70 12.76 -19.31 -0.25 -8.95 16 9 C -0.30 -5.66 6.12 -104.77 -0.64 -6.30 16 10 C 0.08 1.55 11.84 -17.04 -0.20 1.35 16 11 N -0.29 -6.24 12.48 30.83 0.38 -5.86 16 12 N -0.30 -6.74 3.59 -58.18 -0.21 -6.95 16 13 C 0.24 6.01 5.95 -5.19 -0.03 5.97 16 14 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 15 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 16 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 17 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 18 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.21 4.28 6.51 -82.06 -0.53 3.74 16 23 C -0.04 -0.70 5.25 -104.99 -0.55 -1.25 16 24 C -0.08 -1.49 8.52 -39.17 -0.33 -1.82 16 25 C -0.13 -1.96 10.03 -39.64 -0.40 -2.36 16 26 C -0.11 -1.54 10.04 -39.49 -0.40 -1.94 16 27 C -0.13 -1.96 10.03 -39.64 -0.40 -2.35 16 28 C -0.04 -0.77 7.55 -39.17 -0.30 -1.07 16 29 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.19 2.81 8.06 -52.48 -0.42 2.39 16 35 H 0.06 1.54 5.08 -51.93 -0.26 1.27 16 36 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.12 2.24 6.54 -52.49 -0.34 1.90 16 39 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.12 2.12 6.78 -52.49 -0.36 1.76 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -31.85 374.13 -7.09 -38.95 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.73 Total: 3.08 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.36 Total: -1.81 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.91 Total: -36.33 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.53 Total: -25.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.85 -7.09 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759071454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.308 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds