Wall clock time and date at job start Wed Apr 1 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00094 * 2 1 4 4 O 1.20821 * 120.00135 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99985 * 180.02562 * 3 2 1 6 6 O 1.45198 * 109.46862 * 180.02562 * 5 3 2 7 7 C 1.34813 * 116.99856 * 179.97438 * 6 5 3 8 8 O 1.21557 * 119.99411 * 0.27536 * 7 6 5 9 9 C 1.47016 * 119.99832 * 179.97438 * 7 6 5 10 10 C 1.41142 * 126.49669 * 0.02655 * 9 7 6 11 11 N 1.30442 * 108.29657 * 179.97438 * 10 9 7 12 12 N 1.39907 * 109.23634 * 0.02562 * 11 10 9 13 13 C 1.46501 * 125.79307 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47292 * 89.97436 * 13 12 11 15 15 H 1.07997 * 119.99829 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00429 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99782 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47273 * 59.99602 * 18 16 14 20 20 H 1.48504 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46841 * 299.99384 * 18 16 14 22 22 C 1.35152 * 108.41083 * 359.75955 * 12 11 10 23 23 C 1.47727 * 126.47851 * 180.23090 * 22 12 11 24 24 C 1.39621 * 120.14516 * 314.91952 * 23 22 12 25 25 C 1.37950 * 119.84105 * 179.72329 * 24 23 22 26 26 C 1.38363 * 120.15217 * 0.52797 * 25 24 23 27 27 C 1.38369 * 120.30099 * 359.77078 * 26 25 24 28 28 C 1.37945 * 120.15160 * 359.95066 * 27 26 25 29 29 H 1.09000 * 109.47147 * 59.99859 * 1 2 3 30 30 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47475 * 299.99653 * 1 2 3 32 32 H 1.08994 * 109.47313 * 60.00298 * 5 3 2 33 33 H 1.09006 * 109.46774 * 299.99942 * 5 3 2 34 34 H 1.08004 * 125.85287 * 359.94867 * 10 9 7 35 35 H 1.09000 * 109.46848 * 209.96952 * 13 12 11 36 36 H 1.08993 * 109.47383 * 329.97081 * 13 12 11 37 37 H 0.97002 * 120.00581 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.08109 * 359.97438 * 24 23 22 39 39 H 1.07997 * 119.92511 * 180.27590 * 25 24 23 40 40 H 1.07998 * 119.84905 * 179.74269 * 26 25 24 41 41 H 1.07995 * 119.92575 * 179.97438 * 27 26 25 42 42 H 1.07996 * 120.07646 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 8 3.9780 2.6672 0.0001 7 6 5.3034 2.9135 0.0003 8 8 6.0932 1.9895 -0.0053 9 6 5.7934 4.2996 0.0004 10 6 5.0035 5.4693 0.0010 11 7 5.8006 6.5018 0.0015 12 7 7.1279 6.0594 0.0007 13 6 8.3165 6.9158 0.0015 14 6 8.7240 7.2083 1.4226 15 1 8.1543 6.7977 2.2431 16 6 9.8235 8.0010 1.6752 17 7 10.5169 8.5014 0.6761 18 14 10.3290 8.3630 3.4368 19 1 10.6369 7.0891 4.1351 20 1 11.5338 9.2312 3.4375 21 1 9.2184 9.0560 4.1379 22 6 7.1274 4.7079 0.0051 23 6 8.3149 3.8292 0.0107 24 6 9.3877 4.0947 -0.8425 25 6 10.4959 3.2733 -0.8280 26 6 10.5412 2.1822 0.0217 27 6 9.4789 1.9098 0.8654 28 6 8.3669 2.7262 0.8653 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 3.9240 5.5035 0.0006 35 1 9.1316 6.4065 -0.5126 36 1 8.0911 7.8506 -0.5116 37 1 11.2907 9.0588 0.8538 38 1 9.3517 4.9433 -1.5094 39 1 11.3283 3.4800 -1.4842 40 1 11.4095 1.5400 0.0261 41 1 9.5205 1.0564 1.5259 42 1 7.5387 2.5127 1.5246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759071454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:55 Heat of formation + Delta-G solvation = -78.325304 kcal Electronic energy + Delta-G solvation = -29316.997602 eV Core-core repulsion = 25035.825582 eV Total energy + Delta-G solvation = -4281.172020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54095 -41.70893 -40.81591 -39.69152 -37.83999 -37.17414 -35.85206 -33.92845 -33.09774 -31.78498 -31.18023 -29.95442 -29.30992 -27.92840 -25.80021 -24.43818 -23.61081 -23.39655 -22.33016 -21.66271 -20.72398 -19.30978 -18.86835 -18.44450 -18.31609 -18.11385 -17.73329 -17.16351 -16.94951 -16.64873 -16.60403 -16.13555 -15.55626 -15.31651 -15.04950 -14.75516 -14.67802 -14.53443 -14.24016 -14.13932 -13.82043 -13.76679 -13.62923 -13.50157 -13.06975 -12.94434 -12.74409 -12.43992 -12.31073 -12.04745 -11.98234 -11.87836 -11.87015 -11.79819 -11.66593 -11.35443 -10.77761 -10.72835 -9.90908 -9.75994 -9.35542 -8.38566 -6.53815 -0.18376 0.56400 0.70529 0.83541 0.98335 1.12407 1.36522 1.37613 1.45772 1.58179 2.14345 2.20784 2.31551 2.93852 2.95095 3.37337 3.57534 3.67244 3.86814 4.00782 4.02012 4.07778 4.10885 4.24629 4.28641 4.30812 4.34677 4.49886 4.59305 4.72314 4.74135 4.80755 4.88335 4.98750 5.14194 5.18250 5.21411 5.43923 5.48557 5.55286 5.57897 5.61218 5.72363 5.88195 6.09413 6.50729 6.54408 6.63198 6.77967 7.16019 8.69495 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003006 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.628378 B = 9313.868720 C =10568.351339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.470 3.530 4 O -0.521 6.521 5 C 0.073 3.927 6 O -0.343 6.343 7 C 0.563 3.437 8 O -0.517 6.517 9 C -0.309 4.309 10 C 0.098 3.902 11 N -0.328 5.328 12 N -0.325 5.325 13 C 0.261 3.739 14 C -0.555 4.555 15 H 0.049 0.951 16 C 0.029 3.971 17 N -0.913 5.913 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.271 1.271 21 H -0.274 1.274 22 C 0.202 3.798 23 C -0.066 4.066 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.099 4.099 27 C -0.128 4.128 28 C -0.057 4.057 29 H 0.064 0.936 30 H 0.138 0.862 31 H 0.064 0.936 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.222 0.778 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.275 0.725 38 H 0.109 0.891 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -20.209 -1.794 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.313 3.687 4 O -0.409 6.409 5 C -0.001 4.001 6 O -0.260 6.260 7 C 0.410 3.590 8 O -0.407 6.407 9 C -0.322 4.322 10 C -0.088 4.088 11 N -0.147 5.147 12 N -0.100 5.100 13 C 0.144 3.856 14 C -0.593 4.593 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.550 5.550 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.195 1.195 21 H -0.199 1.199 22 C 0.065 3.935 23 C -0.068 4.068 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.117 4.117 27 C -0.146 4.146 28 C -0.076 4.076 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.238 0.762 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.324 -18.637 -1.869 20.923 hybrid contribution -0.222 0.140 0.605 0.660 sum -9.546 -18.497 -1.264 20.853 Atomic orbital electron populations 1.23652 0.73732 1.06162 1.02824 1.86450 1.25567 1.31095 1.83775 1.23161 0.91200 0.81921 0.72398 1.90724 1.67476 1.37402 1.45301 1.22298 0.87907 0.81199 1.08703 1.86523 1.25290 1.29110 1.85114 1.19504 0.79520 0.87946 0.72064 1.90845 1.55966 1.45704 1.48159 1.19093 0.91108 0.92045 1.29950 1.24475 1.01190 0.87798 0.95371 1.77164 0.87150 1.24794 1.25578 1.49468 1.06754 1.04136 1.49661 1.19652 0.78209 0.89153 0.98632 1.21284 1.13405 1.33375 0.91286 0.93296 1.25643 0.95258 0.94299 1.02119 1.69968 1.18852 1.33278 1.32925 0.85479 0.77987 0.78648 0.78890 1.19242 1.19506 1.19879 1.20200 0.94218 0.84499 0.94570 1.18059 0.91913 0.96089 1.00741 1.21314 0.93678 0.99157 0.98312 1.21291 0.97481 0.95429 1.00612 1.21650 0.99092 0.96681 0.94231 1.21362 0.92877 1.00141 1.00200 1.21153 0.98121 0.92193 0.96182 0.91748 0.84359 0.91763 0.84722 0.84607 0.76151 0.91955 0.94822 0.91603 0.87263 0.83633 0.82290 0.82803 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.68 10.56 -51.34 -0.54 -6.22 16 3 C 0.47 9.86 8.04 71.24 0.57 10.43 16 4 O -0.52 -14.73 16.25 28.34 0.46 -14.27 16 5 C 0.07 1.42 6.07 71.24 0.43 1.85 16 6 O -0.34 -9.54 9.60 -50.84 -0.49 -10.03 16 7 C 0.56 18.14 7.83 70.12 0.55 18.69 16 8 O -0.52 -16.83 12.76 19.65 0.25 -16.57 16 9 C -0.31 -11.67 6.12 -19.96 -0.12 -11.79 16 10 C 0.10 3.64 11.84 85.61 1.01 4.65 16 11 N -0.33 -14.74 12.48 -56.37 -0.70 -15.45 16 12 N -0.33 -15.39 3.59 -337.99 -1.21 -16.61 16 13 C 0.26 13.61 5.95 85.63 0.51 14.12 16 14 C -0.56 -30.96 9.39 25.60 0.24 -30.72 16 15 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 16 C 0.03 1.55 5.46 84.65 0.46 2.02 16 17 N -0.91 -50.78 13.29 21.44 0.28 -50.49 16 18 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.20 8.55 6.51 41.45 0.27 8.82 16 23 C -0.07 -2.58 5.25 -20.10 -0.11 -2.69 16 24 C -0.11 -3.90 8.52 22.54 0.19 -3.70 16 25 C -0.13 -3.85 10.03 22.23 0.22 -3.63 16 26 C -0.10 -2.48 10.04 22.33 0.22 -2.26 16 27 C -0.13 -3.47 10.03 22.23 0.22 -3.24 16 28 C -0.06 -1.95 7.55 22.53 0.17 -1.78 16 29 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 30 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 32 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.14 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.22 6.45 8.06 -2.91 -0.02 6.43 16 35 H 0.06 3.22 5.08 -2.39 -0.01 3.21 16 36 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.11 4.22 6.54 -2.91 -0.02 4.20 16 39 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 42 H 0.12 4.07 6.78 -2.91 -0.02 4.05 16 Total: -1.00 -71.20 374.13 7.19 -64.01 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.07 Total: 18.42 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.05 Total: 2.29 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -1.63 Total: -82.55 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.32 Total: -47.09 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -71.20 7.19 -64.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759071454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.317 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds