Wall clock time and date at job start Wed Apr 1 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34719 * 116.99537 * 2 1 4 4 O 1.21476 * 120.00247 * 0.02562 * 3 2 1 5 5 C 1.47635 * 119.99432 * 180.02562 * 3 2 1 6 6 C 1.40931 * 126.27066 * 180.02562 * 5 3 2 7 7 C 1.37078 * 105.46528 * 179.70669 * 6 5 3 8 8 C 1.47060 * 126.65077 * 180.24876 * 7 6 5 9 9 O 1.21544 * 119.99891 * 0.17706 * 8 7 6 10 10 O 1.34807 * 119.99921 * 180.18749 * 8 7 6 11 11 C 1.45206 * 116.99679 * 179.97438 * 10 8 7 12 12 N 1.36810 * 106.69834 * 0.39785 * 7 6 5 13 13 C 1.46500 * 125.06179 * 179.84302 * 12 7 6 14 14 C 1.50703 * 109.47108 * 269.72517 * 13 12 7 15 15 C 1.38633 * 119.75264 * 90.00144 * 14 13 12 16 16 C 1.37617 * 120.24769 * 179.97438 * 15 14 13 17 17 C 1.40712 * 119.74610 * 0.28046 * 16 15 14 18 18 C 1.41400 * 120.24377 * 179.70276 * 17 16 15 19 19 H 1.07999 * 120.00087 * 24.27936 * 18 17 16 20 20 C 1.39947 * 119.99564 * 204.28785 * 18 17 16 21 21 N 1.30821 * 120.00278 * 17.72524 * 20 18 17 22 22 Si 1.86794 * 119.99656 * 197.71822 * 20 18 17 23 23 H 1.48501 * 109.47529 * 60.00194 * 22 20 18 24 24 H 1.48506 * 109.47057 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47379 * 300.00118 * 22 20 18 26 26 C 1.40721 * 119.51082 * 359.46549 * 17 16 15 27 27 C 1.37617 * 119.74346 * 0.50994 * 26 17 16 28 28 N 1.28452 * 109.87173 * 359.57970 * 12 7 6 29 29 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47309 * 300.00030 * 1 2 3 31 31 H 1.08999 * 109.47208 * 59.99803 * 1 2 3 32 32 H 1.08009 * 127.26288 * 359.92408 * 6 5 3 33 33 H 1.08994 * 109.47360 * 60.00000 * 11 10 8 34 34 H 1.09004 * 109.46756 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.46958 * 299.99271 * 11 10 8 36 36 H 1.09002 * 109.47179 * 149.72401 * 13 12 7 37 37 H 1.09004 * 109.47652 * 29.72131 * 13 12 7 38 38 H 1.07997 * 119.87048 * 359.95699 * 15 14 13 39 39 H 1.08001 * 120.12635 * 179.97438 * 16 15 14 40 40 H 0.96999 * 120.00115 * 179.97438 * 21 20 18 41 41 H 1.07999 * 120.12797 * 180.25726 * 26 17 16 42 42 H 1.08001 * 119.87226 * 179.74551 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2192 0.0005 5 6 3.5378 1.2776 -0.0006 6 6 4.3110 2.4559 -0.0001 7 6 5.6161 2.0368 0.0058 8 6 6.8127 2.8916 0.0137 9 8 6.6952 4.1014 0.0187 10 8 8.0398 2.3335 0.0151 11 6 9.1754 3.2383 0.0225 12 7 5.5897 0.6689 -0.0004 13 6 6.7723 -0.1957 -0.0005 14 6 7.1785 -0.4912 -1.4214 15 6 8.0742 0.3455 -2.0691 16 6 8.4525 0.0849 -3.3663 17 6 7.9219 -1.0324 -4.0372 18 6 8.2984 -1.3065 -5.3723 19 1 9.2393 -0.9390 -5.7543 20 6 7.4517 -2.0540 -6.1987 21 7 6.1919 -2.2044 -5.8797 22 14 8.1203 -2.8367 -7.7574 23 1 9.2087 -3.7846 -7.4078 24 1 7.0299 -3.5684 -8.4509 25 1 8.6538 -1.7790 -8.6530 26 6 7.0176 -1.8778 -3.3680 27 6 6.6538 -1.5982 -2.0706 28 7 4.3734 0.2557 -0.0007 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 3.9511 3.4743 -0.0005 33 1 9.1367 3.8628 0.9149 34 1 10.1000 2.6609 0.0234 35 1 9.1422 3.8703 -0.8650 36 1 6.5402 -1.1289 0.5127 37 1 7.5908 0.3080 0.5139 38 1 8.4764 1.2051 -1.5537 39 1 9.1501 0.7382 -3.8692 40 1 5.6050 -2.7221 -6.4526 41 1 6.6074 -2.7404 -3.8721 42 1 5.9568 -2.2433 -1.5564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783907379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:02 Heat of formation + Delta-G solvation = -67.329936 kcal Electronic energy + Delta-G solvation = -29636.051045 eV Core-core repulsion = 25355.355821 eV Total energy + Delta-G solvation = -4280.695225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.66353 -40.26391 -39.97807 -37.81192 -36.55702 -36.39388 -34.49203 -33.10047 -31.36807 -30.37655 -29.42783 -28.28786 -27.81649 -27.05835 -24.66496 -23.81941 -22.96401 -21.31940 -20.80034 -20.45221 -20.05511 -18.49699 -17.52279 -17.16950 -17.00357 -16.80834 -16.33799 -16.16999 -15.65914 -15.47794 -15.36079 -14.33600 -14.17105 -13.88052 -13.71069 -13.51275 -13.42363 -13.34481 -13.12501 -12.62383 -12.32030 -12.18295 -12.07591 -11.87853 -11.75994 -11.21494 -11.18041 -11.13304 -10.92413 -10.83290 -10.80341 -10.74040 -10.61898 -10.55713 -9.90487 -9.51853 -9.33162 -9.29932 -9.04318 -7.64692 -7.54381 -6.94043 -4.55081 1.06108 1.40631 2.10855 2.39704 2.65048 2.85365 2.92017 2.95270 2.97960 3.00109 3.19200 3.23792 3.79681 4.27546 4.43094 4.56744 5.00045 5.03979 5.06275 5.14232 5.14480 5.27013 5.40666 5.42641 5.46818 5.50581 5.55949 5.64091 5.80819 6.11514 6.16145 6.24144 6.30477 6.32813 6.65247 6.80150 6.89957 7.11229 7.18708 7.45133 7.51984 7.65152 7.67658 7.88487 7.89827 7.99646 8.12245 8.46420 8.70599 8.78947 9.99196 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008816 B = 0.003736 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.320342 B = 7493.474461 C = 9845.629070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.564 3.436 4 O -0.504 6.504 5 C -0.037 4.037 6 C -0.089 4.089 7 C -0.034 4.034 8 C 0.549 3.451 9 O -0.494 6.494 10 O -0.345 6.345 11 C 0.034 3.966 12 N -0.216 5.216 13 C 0.169 3.831 14 C -0.262 4.262 15 C -0.064 4.064 16 C -0.235 4.235 17 C 0.122 3.878 18 C -0.454 4.454 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.781 5.781 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.172 4.172 27 C -0.069 4.069 28 N -0.187 5.187 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.175 0.825 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.285 0.715 41 H 0.119 0.881 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 3.160 10.942 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.256 6.256 3 C 0.406 3.594 4 O -0.390 6.390 5 C -0.188 4.188 6 C -0.117 4.117 7 C -0.157 4.157 8 C 0.392 3.608 9 O -0.380 6.380 10 O -0.261 6.261 11 C -0.059 4.059 12 N -0.012 5.012 13 C 0.054 3.946 14 C -0.265 4.265 15 C -0.083 4.083 16 C -0.254 4.254 17 C 0.119 3.881 18 C -0.482 4.482 19 H 0.099 0.901 20 C -0.145 4.145 21 N -0.404 5.404 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.192 4.192 27 C -0.088 4.088 28 N -0.031 5.031 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.192 0.808 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.137 0.863 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.781 2.557 10.876 11.314 hybrid contribution 0.039 0.661 -0.973 1.177 sum -1.742 3.218 9.903 10.558 Atomic orbital electron populations 1.23312 0.76008 1.03862 1.02552 1.86660 1.23299 1.31841 1.83834 1.19460 0.86085 0.81630 0.72189 1.90846 1.65484 1.36088 1.46611 1.20407 0.91166 0.90669 1.16539 1.21690 0.88826 0.99855 1.01330 1.20200 0.93326 0.84752 1.17379 1.19525 0.82509 0.85918 0.72855 1.90885 1.86979 1.14209 1.45938 1.86689 1.14925 1.40605 1.83858 1.23356 0.85715 0.94062 1.02782 1.47327 1.05764 1.04364 1.43749 1.21220 0.81475 0.93372 0.98563 1.18808 1.09824 1.03148 0.94726 1.20734 0.96056 0.96911 0.94562 1.20961 1.08401 1.00321 0.95762 1.17708 0.89104 0.88769 0.92474 1.19698 1.04436 1.28297 0.95804 0.90139 1.25993 0.94094 0.94285 1.00091 1.69814 1.04169 1.29527 1.36937 0.86315 0.79658 0.79983 0.80563 1.18603 1.20142 1.18845 1.21290 1.03293 1.01488 0.93082 1.20567 0.97326 0.95794 0.95105 1.73716 0.89975 1.26328 1.13057 0.87886 0.91857 0.91704 0.80769 0.91726 0.87518 0.91378 0.88241 0.87235 0.87798 0.88898 0.90411 0.86309 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.34 -5.06 10.57 -40.54 -0.43 -5.49 16 3 C 0.56 9.24 7.97 34.57 0.28 9.51 16 4 O -0.50 -8.69 16.70 -19.25 -0.32 -9.01 16 5 C -0.04 -0.63 7.13 -82.94 -0.59 -1.22 16 6 C -0.09 -1.45 10.55 -38.98 -0.41 -1.86 16 7 C -0.03 -0.57 6.90 -82.49 -0.57 -1.14 16 8 C 0.55 8.60 7.93 34.31 0.27 8.88 16 9 O -0.49 -8.35 16.69 -19.30 -0.32 -8.67 16 10 O -0.34 -4.67 5.08 -40.78 -0.21 -4.88 16 11 C 0.03 0.34 10.36 101.05 1.05 1.39 16 12 N -0.22 -3.68 3.33 -58.63 -0.20 -3.87 16 13 C 0.17 2.68 5.95 -5.19 -0.03 2.64 16 14 C -0.26 -5.19 5.49 -104.33 -0.57 -5.76 16 15 C -0.06 -1.30 9.53 -39.66 -0.38 -1.68 16 16 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 17 C 0.12 3.09 5.57 -106.82 -0.60 2.50 16 18 C -0.45 -11.45 9.05 -37.74 -0.34 -11.80 16 19 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 20 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.78 -19.50 10.95 55.55 0.61 -18.89 16 22 Si 0.91 17.80 29.59 -169.99 -5.03 12.76 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 24 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 27 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 28 N -0.19 -3.34 11.97 33.32 0.40 -2.94 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.17 2.55 8.06 -52.48 -0.42 2.12 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.40 8.08 -51.93 -0.42 0.98 16 37 H 0.11 1.49 6.03 -51.93 -0.31 1.18 16 38 H 0.10 1.84 4.80 -52.49 -0.25 1.58 16 39 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 42 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -29.87 370.80 -6.59 -36.46 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.66 Total: 6.59 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.02 Total: -7.64 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.81 Total: -25.70 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.28 Total: -28.05 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.87 -6.59 -36.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783907379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.871 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds