Wall clock time and date at job start Wed Apr 1 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 119.99675 * 2 1 4 4 S 1.71202 * 120.00284 * 5.15339 * 3 2 1 5 5 N 1.34786 * 119.99776 * 185.15418 * 3 2 1 6 6 N 1.40098 * 119.99948 * 5.08737 * 5 3 2 7 7 C 1.29772 * 119.99861 * 174.98769 * 6 5 3 8 8 C 1.47436 * 119.99810 * 185.00103 * 7 6 5 9 9 C 1.36731 * 126.68705 * 4.90766 * 8 7 6 10 10 N 1.34668 * 108.05051 * 180.25540 * 9 8 7 11 11 C 1.46500 * 125.24896 * 179.73241 * 10 9 8 12 12 C 1.50696 * 109.47150 * 124.99749 * 11 10 9 13 13 H 1.08004 * 119.99795 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00174 * 179.97438 * 12 11 10 15 15 N 1.31505 * 120.00168 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99998 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46825 * 60.00696 * 16 14 12 18 18 H 1.48504 * 109.47011 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47606 * 300.00643 * 16 14 12 20 20 N 1.39816 * 109.49439 * 359.75149 * 10 9 8 21 21 C 1.31563 * 108.81571 * 0.02562 * 20 10 9 22 22 C 1.48214 * 126.49629 * 179.97438 * 21 20 10 23 23 C 1.39835 * 120.91306 * 319.39148 * 22 21 20 24 24 C 1.37936 * 119.01735 * 179.97438 * 23 22 21 25 25 N 1.31951 * 120.88567 * 0.02562 * 24 23 22 26 26 C 1.31939 * 122.01758 * 359.97438 * 25 24 23 27 27 C 1.37945 * 120.89075 * 359.97438 * 26 25 24 28 28 H 1.08992 * 109.47114 * 60.00034 * 1 2 3 29 29 H 1.09008 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46730 * 299.99437 * 1 2 3 31 31 H 0.97001 * 120.00428 * 180.02562 * 2 1 3 32 32 H 0.97002 * 119.99403 * 185.08587 * 5 3 2 33 33 H 1.08004 * 119.99758 * 5.01184 * 7 6 5 34 34 H 1.07999 * 125.97240 * 359.97438 * 9 8 7 35 35 H 1.09010 * 109.46909 * 244.99313 * 11 10 9 36 36 H 1.08997 * 109.47482 * 4.99701 * 11 10 9 37 37 H 0.97007 * 120.00418 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.49443 * 359.95747 * 23 22 21 39 39 H 1.08003 * 119.55994 * 179.97438 * 24 23 22 40 40 H 1.08007 * 119.55429 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.49420 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 16 1.2880 2.6469 0.1332 5 7 3.4826 1.1696 -0.1049 6 7 4.1705 -0.0316 -0.3208 7 6 5.4530 -0.0183 -0.5188 8 6 6.1599 -1.2677 -0.8551 9 6 5.5931 -2.4907 -1.0842 10 7 6.5815 -3.3650 -1.3530 11 6 6.3948 -4.7875 -1.6493 12 6 7.0474 -5.1160 -2.9672 13 1 7.5506 -4.3424 -3.5283 14 6 7.0021 -6.4041 -3.4569 15 7 6.3890 -7.3460 -2.7740 16 14 7.8105 -6.8111 -5.0910 17 1 9.2622 -6.5073 -5.0143 18 1 7.6213 -8.2531 -5.3912 19 1 7.1905 -5.9964 -6.1666 20 7 7.8135 -2.7055 -1.3052 21 6 7.6062 -1.4399 -1.0114 22 6 8.6404 -0.3889 -0.8617 23 6 9.8498 -0.6582 -0.2135 24 6 10.7851 0.3489 -0.0967 25 7 10.5501 1.5516 -0.5858 26 6 9.4226 1.8473 -1.2041 27 6 8.4338 0.8991 -1.3657 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9501 -0.8400 -0.0004 32 1 3.9733 2.0031 -0.0308 33 1 6.0024 0.9079 -0.4370 34 1 4.5376 -2.7172 -1.0505 35 1 6.8494 -5.3858 -0.8596 36 1 5.3292 -5.0100 -1.7060 37 1 6.3568 -8.2522 -3.1186 38 1 10.0486 -1.6402 0.1898 39 1 11.7220 0.1506 0.4027 40 1 9.2719 2.8452 -1.5888 41 1 7.5136 1.1480 -1.8732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788406940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:35 Heat of formation + Delta-G solvation = 145.899442 kcal Electronic energy + Delta-G solvation = -25747.478813 eV Core-core repulsion = 21983.368281 eV Total energy + Delta-G solvation = -3764.110532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11195 -40.76483 -40.10489 -37.41584 -35.92278 -34.61531 -34.16177 -32.45536 -32.18548 -30.91679 -29.06337 -27.63280 -25.90943 -25.61136 -24.40204 -23.97655 -23.03288 -21.38268 -21.14604 -19.83283 -18.89239 -18.68858 -18.13669 -17.28254 -17.11664 -16.99393 -16.51300 -16.34786 -16.18889 -15.93185 -15.80461 -15.18938 -14.84433 -14.60079 -14.56842 -14.51351 -14.20200 -13.91184 -13.63372 -13.25915 -13.02837 -12.77771 -12.68843 -12.53322 -12.49261 -12.31224 -11.87377 -11.82225 -11.52455 -11.10169 -10.76114 -10.52280 -10.47898 -10.10264 -10.05323 -9.34784 -8.97946 -8.88008 -8.38089 -6.51566 -0.27712 0.00900 0.21289 0.48802 0.68015 1.20655 1.37113 1.38793 1.46068 1.50812 1.64940 1.99919 2.05555 2.31278 2.88641 2.95651 3.17089 3.47939 3.60129 3.74711 3.92092 4.05375 4.09411 4.18877 4.23370 4.33478 4.57142 4.59353 4.66224 4.79657 4.81017 4.87001 4.90853 4.95241 4.97791 5.13103 5.30898 5.41997 5.48448 5.52641 5.72768 5.75558 6.00214 6.14164 6.55537 6.71188 6.78933 7.01713 7.18980 8.69290 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.006619 B = 0.003330 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4229.549909 B = 8405.919745 C =12070.578312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.655 5.655 3 C 0.608 3.392 4 S -0.716 6.716 5 N -0.528 5.528 6 N -0.321 5.321 7 C 0.227 3.773 8 C -0.227 4.227 9 C 0.116 3.884 10 N -0.339 5.339 11 C 0.267 3.733 12 C -0.550 4.550 13 H 0.054 0.946 14 C 0.025 3.975 15 N -0.917 5.917 16 Si 0.963 3.037 17 H -0.275 1.275 18 H -0.276 1.276 19 H -0.269 1.269 20 N -0.293 5.293 21 C 0.116 3.884 22 C 0.024 3.976 23 C -0.156 4.156 24 C 0.101 3.899 25 N -0.503 5.503 26 C 0.102 3.898 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.421 0.579 32 H 0.420 0.580 33 H 0.152 0.848 34 H 0.205 0.795 35 H 0.028 0.972 36 H 0.064 0.936 37 H 0.273 0.727 38 H 0.134 0.866 39 H 0.181 0.819 40 H 0.191 0.809 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 12.911 5.454 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.281 5.281 3 C 0.244 3.756 4 S -0.593 6.593 5 N -0.251 5.251 6 N -0.129 5.129 7 C 0.018 3.982 8 C -0.243 4.243 9 C -0.036 4.036 10 N -0.116 5.116 11 C 0.149 3.851 12 C -0.588 4.588 13 H 0.072 0.928 14 C -0.177 4.177 15 N -0.555 5.555 16 Si 0.788 3.212 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.194 1.194 20 N -0.113 5.113 21 C -0.053 4.053 22 C 0.014 3.986 23 C -0.177 4.177 24 C -0.055 4.055 25 N -0.213 5.213 26 C -0.054 4.054 27 C -0.172 4.172 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.265 0.735 33 H 0.169 0.831 34 H 0.221 0.779 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.152 0.848 39 H 0.198 0.802 40 H 0.207 0.793 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.800 12.506 5.407 13.743 hybrid contribution 0.586 -1.114 -0.686 1.434 sum -1.215 11.391 4.722 12.391 Atomic orbital electron populations 1.22148 0.74733 1.05087 1.03977 1.44950 1.09867 1.06125 1.67206 1.21577 0.82663 0.91598 0.79810 1.93750 1.68730 1.18800 1.77993 1.45969 1.03534 1.07673 1.67885 1.74614 1.11379 1.06755 1.20159 1.23504 0.89664 0.96407 0.88582 1.19082 0.90303 0.92759 1.22123 1.23242 0.96534 0.88889 0.94980 1.49071 1.02805 1.10623 1.49084 1.19474 0.98618 0.70649 0.96409 1.21329 1.36951 0.95415 1.05127 0.92753 1.25619 0.95386 0.95561 1.01091 1.69955 1.42877 1.02721 1.39970 0.85519 0.78926 0.77499 0.79268 1.20019 1.20044 1.19449 1.77519 1.05737 1.05950 1.22095 1.22042 0.91990 0.91340 0.99939 1.18232 0.91730 0.91581 0.97020 1.22353 0.93660 1.01626 1.00069 1.23026 0.99349 0.87469 0.95681 1.67726 1.22455 1.21474 1.09658 1.23205 0.87753 1.00630 0.93855 1.22389 1.02464 0.91792 1.00531 0.91015 0.86477 0.90675 0.73964 0.73538 0.83122 0.77867 0.95420 0.91827 0.91787 0.84807 0.80229 0.79262 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.17 127.77 1.30 2.42 16 2 N -0.65 -11.13 5.66 -371.68 -2.10 -13.23 16 3 C 0.61 13.41 7.97 179.05 1.43 14.83 16 4 S -0.72 -21.51 29.34 -56.49 -1.66 -23.16 16 5 N -0.53 -9.81 6.26 -59.11 -0.37 -10.18 16 6 N -0.32 -5.93 10.13 -52.19 -0.53 -6.46 16 7 C 0.23 4.09 10.37 87.42 0.91 5.00 16 8 C -0.23 -5.73 6.24 -19.06 -0.12 -5.85 16 9 C 0.12 3.36 11.11 83.90 0.93 4.29 16 10 N -0.34 -12.89 3.64 -350.83 -1.28 -14.17 16 11 C 0.27 11.99 6.22 85.63 0.53 12.52 16 12 C -0.55 -28.06 9.21 25.60 0.24 -27.82 16 13 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 14 C 0.02 1.26 5.46 84.66 0.46 1.72 16 15 N -0.92 -48.37 13.29 21.45 0.28 -48.08 16 16 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 N -0.29 -11.21 12.34 -44.57 -0.55 -11.76 16 21 C 0.12 3.45 6.94 43.99 0.31 3.75 16 22 C 0.02 0.59 5.83 -19.85 -0.12 0.47 16 23 C -0.16 -3.60 9.89 22.58 0.22 -3.37 16 24 C 0.10 1.99 11.17 84.60 0.95 2.94 16 25 N -0.50 -10.39 10.35 -196.15 -2.03 -12.42 16 26 C 0.10 1.69 11.17 84.61 0.95 2.63 16 27 C -0.15 -2.67 8.77 22.59 0.20 -2.48 16 28 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 29 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 1.16 7.89 -2.38 -0.02 1.14 16 31 H 0.42 6.13 7.91 -92.71 -0.73 5.39 16 32 H 0.42 6.64 8.64 -213.32 -1.84 4.80 16 33 H 0.15 1.82 6.49 -2.91 -0.02 1.80 16 34 H 0.20 4.61 8.06 -2.91 -0.02 4.58 16 35 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 2.77 8.05 -2.39 -0.02 2.75 16 37 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 38 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.16 2.04 7.05 -2.91 -0.02 2.02 16 Total: -1.00 -69.12 381.12 0.49 -68.62 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -1.48 Total: 16.92 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 8.18 Total: 11.05 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -6.57 Total: -116.30 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: -21.51 SS G_CDS: -1.66 Total: -23.16 kcal Total: -69.12 0.49 -68.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788406940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.523 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds