Wall clock time and date at job start Wed Apr 1 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46499 * 109.47101 * 2 1 4 4 C 1.46500 * 119.99667 * 275.00340 * 3 2 1 5 5 C 1.50700 * 109.46905 * 280.04644 * 4 3 2 6 6 H 1.08001 * 120.00111 * 4.29956 * 5 4 3 7 7 C 1.37884 * 120.00201 * 184.29769 * 5 4 3 8 8 N 1.31518 * 119.99566 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47213 * 89.99739 * 9 7 5 11 11 H 1.48498 * 109.47250 * 210.00008 * 9 7 5 12 12 H 1.48501 * 109.47289 * 330.00229 * 9 7 5 13 13 S 1.65602 * 119.99979 * 95.00108 * 3 2 1 14 14 O 1.42095 * 106.40198 * 330.07844 * 13 3 2 15 15 O 1.42098 * 106.39970 * 197.16064 * 13 3 2 16 16 N 1.65593 * 107.21847 * 83.62098 * 13 3 2 17 17 C 1.46500 * 119.99926 * 65.13994 * 16 13 3 18 18 C 1.50708 * 109.47035 * 165.48734 * 17 16 13 19 19 C 1.38147 * 120.00316 * 104.72342 * 18 17 16 20 20 C 1.38678 * 120.00182 * 179.77202 * 19 18 17 21 21 O 1.35984 * 120.00054 * 180.25638 * 20 19 18 22 22 C 1.42902 * 116.99915 * 180.27584 * 21 20 19 23 23 C 1.38722 * 119.99722 * 0.52382 * 20 19 18 24 24 C 1.38109 * 119.99625 * 359.72993 * 23 20 19 25 25 C 1.38681 * 119.99335 * 284.99960 * 18 17 16 26 26 O 1.35974 * 120.00477 * 359.97438 * 25 18 17 27 27 H 1.08996 * 109.46789 * 59.99987 * 1 2 3 28 28 H 1.08997 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46752 * 299.99860 * 1 2 3 30 30 H 1.08997 * 109.46954 * 240.00131 * 2 1 3 31 31 H 1.08996 * 109.46789 * 120.00013 * 2 1 3 32 32 H 1.08995 * 109.47571 * 40.04680 * 4 3 2 33 33 H 1.09007 * 109.46962 * 160.04916 * 4 3 2 34 34 H 0.97000 * 119.99850 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00279 * 245.14382 * 16 13 3 36 36 H 1.09001 * 109.47517 * 285.48220 * 17 16 13 37 37 H 1.08996 * 109.47577 * 45.48805 * 17 16 13 38 38 H 1.08003 * 119.99747 * 0.02562 * 19 18 17 39 39 H 1.08998 * 109.46748 * 299.99764 * 22 21 20 40 40 H 1.09001 * 109.47007 * 59.98913 * 22 21 20 41 41 H 1.08996 * 109.47402 * 179.97438 * 22 21 20 42 42 H 1.07996 * 119.99894 * 179.70201 * 23 20 19 43 43 H 1.08007 * 119.99558 * 179.97438 * 24 23 20 44 44 H 0.96699 * 113.99800 * 89.99932 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4384 1.6947 -1.9427 6 1 4.0486 0.9133 -1.5144 7 6 3.8308 2.3135 -3.1108 8 7 3.0875 3.2647 -3.6327 9 14 5.4173 1.7999 -3.9526 10 1 5.1342 0.7079 -4.9183 11 1 5.9932 2.9626 -4.6748 12 1 6.3856 1.3208 -2.9337 13 16 2.4123 2.1202 1.4287 14 8 1.5766 1.5432 2.4226 15 8 2.4524 3.5152 1.1611 16 7 3.9618 1.6709 1.8021 17 6 5.0724 2.0864 0.9418 18 6 6.3766 1.8689 1.6650 19 6 7.1889 0.8061 1.3200 20 6 8.3912 0.6087 1.9823 21 8 9.1932 -0.4345 1.6392 22 6 10.4141 -0.5810 2.3672 23 6 8.7731 1.4722 2.9986 24 6 7.9585 2.5317 3.3469 25 6 6.7585 2.7325 2.6807 26 8 5.9566 3.7756 3.0237 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3125 1.8777 -1.9116 33 1 2.1821 3.1803 -1.0657 34 1 3.3633 3.6998 -4.4546 35 1 4.1341 1.1326 2.5904 36 1 5.0625 1.4965 0.0253 37 1 4.9655 3.1427 0.6952 38 1 6.8894 0.1312 0.5318 39 1 11.0242 0.3127 2.2369 40 1 10.1918 -0.7180 3.4255 41 1 10.9572 -1.4496 1.9949 42 1 9.7071 1.3157 3.5176 43 1 8.2557 3.2038 4.1385 44 1 5.3117 3.5659 3.7130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800057950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:12 Heat of formation + Delta-G solvation = -157.638617 kcal Electronic energy + Delta-G solvation = -29300.082778 eV Core-core repulsion = 25150.915426 eV Total energy + Delta-G solvation = -4149.167352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37845 -39.57847 -38.29143 -37.67267 -37.00478 -36.86795 -36.02853 -34.65146 -32.20108 -31.49022 -30.35336 -28.48898 -27.96375 -26.54307 -24.93078 -23.66553 -23.25233 -22.30693 -20.40621 -19.33315 -19.02592 -18.59124 -18.53925 -18.11505 -17.62256 -17.24066 -16.73984 -16.56706 -16.26657 -16.04083 -15.54409 -15.27379 -15.04871 -14.79236 -14.61963 -14.29767 -14.25077 -13.76582 -13.65420 -13.52746 -13.48451 -13.32885 -13.17684 -13.10019 -12.98682 -12.71836 -12.68475 -12.67167 -12.32857 -12.26055 -12.07187 -11.78802 -11.71590 -11.55876 -11.32292 -10.56261 -10.47237 -10.03309 -9.75524 -9.04302 -8.13852 -6.26428 -0.34202 0.19931 0.28659 1.43584 1.46043 1.54522 2.01199 2.34063 2.43924 2.53461 2.69741 3.18860 3.32547 3.45906 3.67991 3.78919 3.99280 4.07731 4.24460 4.34589 4.38655 4.43499 4.46305 4.49480 4.56641 4.71500 4.76048 4.78243 4.94263 4.97484 5.01939 5.09208 5.18907 5.24456 5.31528 5.44478 5.45423 5.55291 5.60084 5.80948 5.92067 6.14552 6.19431 6.39532 6.83727 6.85625 7.43270 8.94531 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009185 B = 0.004674 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.765607 B = 5989.249613 C = 7543.145419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.535 4.535 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.928 5.928 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.257 1.257 13 S 2.800 3.200 14 O -1.003 7.003 15 O -1.014 7.014 16 N -1.107 6.107 17 C 0.171 3.829 18 C -0.090 4.090 19 C -0.134 4.134 20 C 0.111 3.889 21 O -0.336 6.336 22 C 0.016 3.984 23 C -0.179 4.179 24 C -0.104 4.104 25 C 0.073 3.927 26 O -0.504 6.504 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.421 0.579 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.307 -9.241 15.287 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.574 4.574 6 H 0.095 0.905 7 C -0.186 4.186 8 N -0.568 5.568 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.181 1.181 13 S 2.808 3.192 14 O -0.987 6.987 15 O -0.998 6.998 16 N -0.868 5.868 17 C 0.046 3.954 18 C -0.093 4.093 19 C -0.153 4.153 20 C 0.066 3.934 21 O -0.250 6.250 22 C -0.078 4.078 23 C -0.198 4.198 24 C -0.122 4.122 25 C 0.028 3.972 26 O -0.315 6.315 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.182 0.818 43 H 0.175 0.825 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 11.971 -8.268 14.914 20.835 hybrid contribution 0.536 -0.342 -0.422 0.763 sum 12.507 -8.611 14.492 20.990 Atomic orbital electron populations 1.22199 0.95986 1.03173 1.01376 1.21250 0.94600 0.81207 1.03321 1.57627 1.79237 1.24152 1.22681 1.18749 0.96473 0.91117 0.80200 1.21816 1.07327 1.20194 1.08109 0.90488 1.25745 1.00047 0.94770 0.97991 1.70068 1.39929 1.25660 1.21111 0.85692 0.80165 0.77683 0.79105 1.19880 1.21667 1.18066 1.01148 0.72960 0.72804 0.72241 1.93538 1.65982 1.79642 1.59498 1.93546 1.87121 1.33507 1.85579 1.55600 1.23299 1.70039 1.37892 1.19974 0.82551 1.00614 0.92310 1.19967 0.96192 0.94958 0.98138 1.20334 0.93622 0.98967 1.02404 1.19031 0.90972 0.88688 0.94730 1.86095 1.33246 1.45340 1.60313 1.23387 0.83080 1.04048 0.97248 1.21430 1.02701 0.96284 0.99377 1.21438 0.93292 0.97571 0.99909 1.18429 0.92952 0.89171 0.96688 1.84851 1.51081 1.33976 1.61613 0.93470 0.89131 0.93318 0.90017 0.89613 0.96456 0.96071 0.92716 0.74370 0.90104 0.91575 0.85002 0.91551 0.91079 0.86561 0.81836 0.82548 0.74348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.99 0.74 -4.40 16 2 C 0.12 4.02 6.02 86.38 0.52 4.54 16 3 N -1.00 -40.49 2.84 -519.84 -1.48 -41.97 16 4 C 0.26 12.99 5.46 85.63 0.47 13.46 16 5 C -0.54 -27.40 8.51 25.60 0.22 -27.19 16 6 H 0.08 3.66 6.45 -2.91 -0.02 3.65 16 7 C 0.01 0.76 5.46 84.66 0.46 1.22 16 8 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 9 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 13 S 2.80 109.16 6.07 -56.49 -0.34 108.82 16 14 O -1.00 -38.94 17.17 -128.00 -2.20 -41.13 16 15 O -1.01 -48.51 16.02 -128.00 -2.05 -50.56 16 16 N -1.11 -34.63 6.05 -190.78 -1.15 -35.78 16 17 C 0.17 5.97 5.93 85.64 0.51 6.48 16 18 C -0.09 -2.65 5.29 -19.78 -0.10 -2.75 16 19 C -0.13 -3.69 9.60 22.35 0.21 -3.47 16 20 C 0.11 2.58 6.69 22.49 0.15 2.73 16 21 O -0.34 -7.19 10.50 -93.37 -0.98 -8.17 16 22 C 0.02 0.18 9.81 113.37 1.11 1.30 16 23 C -0.18 -3.28 9.03 22.35 0.20 -3.08 16 24 C -0.10 -2.09 9.98 22.35 0.22 -1.86 16 25 C 0.07 1.92 6.68 22.49 0.15 2.07 16 26 O -0.50 -13.72 12.83 -93.26 -1.20 -14.91 16 27 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.55 7.97 -2.38 -0.02 1.53 16 30 H 0.08 2.69 8.09 -2.39 -0.02 2.67 16 31 H 0.09 2.38 7.78 -2.39 -0.02 2.37 16 32 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.02 1.22 6.77 -2.38 -0.02 1.20 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.42 10.35 8.64 -96.75 -0.84 9.51 16 36 H 0.08 3.04 5.67 -2.39 -0.01 3.02 16 37 H 0.07 2.71 7.62 -2.39 -0.02 2.70 16 38 H 0.13 3.71 8.00 -2.91 -0.02 3.68 16 39 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 40 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.16 1.83 6.29 -2.91 -0.02 1.81 16 43 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.40 7.74 9.06 -74.06 -0.67 7.07 16 Total: -1.00 -73.27 380.84 -2.69 -75.96 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.46 Total: 28.41 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.86 Total: -10.96 kcal Atomic # 7 Polarization: -129.29 SS G_CDS: -2.35 Total: -131.64 kcal Atomic # 8 Polarization: -108.35 SS G_CDS: -6.42 Total: -114.78 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 109.16 SS G_CDS: -0.34 Total: 108.82 kcal Total: -73.27 -2.69 -75.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800057950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.679 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds