Wall clock time and date at job start Wed Apr 1 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47272 * 2 1 4 4 C 1.46492 * 120.00331 * 274.00406 * 3 2 1 5 5 C 1.50706 * 109.47062 * 280.84226 * 4 3 2 6 6 H 1.08004 * 119.99527 * 3.39954 * 5 4 3 7 7 C 1.37875 * 120.00452 * 183.39492 * 5 4 3 8 8 N 1.31517 * 120.00000 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99799 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47098 * 89.99800 * 9 7 5 11 11 H 1.48498 * 109.47199 * 209.99574 * 9 7 5 12 12 H 1.48501 * 109.46920 * 329.99763 * 9 7 5 13 13 S 1.65603 * 119.99794 * 93.99615 * 3 2 1 14 14 O 1.42101 * 106.40551 * 336.29297 * 13 3 2 15 15 O 1.42093 * 106.40387 * 203.36890 * 13 3 2 16 16 N 1.65603 * 107.21556 * 89.83110 * 13 3 2 17 17 C 1.46495 * 120.00223 * 65.47527 * 16 13 3 18 18 C 1.50701 * 109.47259 * 164.43922 * 17 16 13 19 19 C 1.38289 * 119.99989 * 260.23345 * 18 17 16 20 20 C 1.38208 * 120.14576 * 180.27808 * 19 18 17 21 21 C 1.38292 * 120.14548 * 359.76499 * 20 19 18 22 22 C 1.38519 * 119.99807 * 359.97438 * 21 20 19 23 23 O 1.35997 * 120.06969 * 180.02562 * 22 21 20 24 24 C 1.42898 * 117.00170 * 359.97438 * 23 22 21 25 25 C 1.38516 * 120.00058 * 80.00169 * 18 17 16 26 26 O 1.35994 * 120.07595 * 359.97013 * 25 18 17 27 27 H 1.08998 * 109.47292 * 305.05250 * 1 2 3 28 28 H 1.08998 * 109.46848 * 65.05578 * 1 2 3 29 29 H 1.08997 * 109.46728 * 185.04854 * 1 2 3 30 30 H 1.08998 * 109.47560 * 239.99720 * 2 1 3 31 31 H 1.09000 * 109.47067 * 119.99947 * 2 1 3 32 32 H 1.08997 * 109.47429 * 40.83603 * 4 3 2 33 33 H 1.08999 * 109.47477 * 160.84249 * 4 3 2 34 34 H 0.97000 * 119.99328 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99602 * 245.47217 * 16 13 3 36 36 H 1.09006 * 109.46899 * 44.43691 * 17 16 13 37 37 H 1.08996 * 109.47041 * 284.44124 * 17 16 13 38 38 H 1.07998 * 119.92597 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.92832 * 179.74119 * 20 19 18 40 40 H 1.08000 * 120.00036 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47204 * 179.97438 * 24 23 22 42 42 H 1.08993 * 109.46878 * 300.00124 * 24 23 22 43 43 H 1.09003 * 109.47180 * 60.00083 * 24 23 22 44 44 H 0.96700 * 114.00431 * 269.73479 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1790 2.1014 -1.2655 5 6 3.4607 1.6691 -1.9303 6 1 4.0646 0.8924 -1.4849 7 6 3.8621 2.2652 -3.1069 8 7 4.9808 1.8883 -3.6866 9 14 2.8178 3.6091 -3.8768 10 1 3.2456 4.9306 -3.3514 11 1 2.9879 3.5843 -5.3518 12 1 1.3898 3.3808 -3.5392 13 16 2.3886 2.1285 1.4307 14 8 1.6435 1.4583 2.4381 15 8 2.2899 3.5256 1.1910 16 7 3.9847 1.8198 1.7462 17 6 5.0232 2.3587 0.8647 18 6 6.3610 2.2728 1.5533 19 6 6.8962 3.3910 2.1662 20 6 8.1254 3.3171 2.7936 21 6 8.8233 2.1234 2.8156 22 6 8.2904 0.9983 2.2083 23 8 8.9752 -0.1765 2.2294 24 6 10.2394 -0.1785 2.8955 25 6 7.0522 1.0727 1.5766 26 8 6.5248 -0.0292 0.9790 27 1 -0.3634 0.5902 0.8412 28 1 -0.3633 0.4334 -0.9318 29 1 -0.3633 -1.0237 0.0904 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3369 1.8777 -1.9203 33 1 2.2139 3.1734 -1.0717 34 1 5.2630 2.3074 -4.5146 35 1 4.2319 1.2821 2.5148 36 1 4.7994 3.4003 0.6341 37 1 5.0521 1.7803 -0.0587 38 1 6.3543 4.3251 2.1509 39 1 8.5420 4.1936 3.2675 40 1 9.7839 2.0684 3.3062 41 1 10.6782 -1.1747 2.8391 42 1 10.9042 0.5394 2.4153 43 1 10.1000 0.0980 3.9406 44 1 5.9730 -0.5673 1.5630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800058696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:16 Heat of formation + Delta-G solvation = -125.415000 kcal Electronic energy + Delta-G solvation = -29490.552374 eV Core-core repulsion = 25342.782344 eV Total energy + Delta-G solvation = -4147.770031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42746 -38.08124 -36.75221 -36.36695 -36.16266 -35.30078 -34.69227 -32.61438 -30.42861 -30.20659 -29.69045 -27.37985 -27.12809 -25.23926 -22.91245 -22.40317 -21.55686 -21.24912 -18.88944 -18.42307 -17.63795 -17.17805 -16.92070 -16.70249 -16.42996 -15.98291 -15.75581 -15.25779 -15.03655 -14.39973 -14.20948 -14.06830 -13.89951 -13.56601 -13.39354 -12.72521 -12.62765 -12.40362 -12.36345 -12.19452 -12.11690 -12.03311 -11.92554 -11.55440 -11.51305 -11.43349 -11.20177 -11.12948 -11.07396 -10.94506 -10.50188 -10.37502 -10.30101 -10.15056 -9.59838 -8.96650 -8.70032 -8.61448 -8.10511 -8.09797 -6.12538 -4.13766 1.04410 1.33185 1.43844 3.16361 3.27877 3.34940 3.39123 3.43083 3.72462 4.12026 4.31578 4.37335 4.71678 4.82436 4.96641 4.98946 5.03521 5.18637 5.21922 5.31992 5.36074 5.37857 5.46574 5.66042 5.71170 5.78118 5.96308 6.01045 6.13649 6.17655 6.28524 6.39139 6.53640 6.57202 6.61890 6.64239 6.78983 6.88965 7.12611 7.20697 7.26307 7.47930 7.59007 7.92666 8.43416 8.91585 9.47359 10.98609 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010669 B = 0.004366 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.836220 B = 6412.013015 C = 7474.540719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.985 5.985 4 C 0.213 3.787 5 C -0.543 4.543 6 H 0.087 0.913 7 C 0.079 3.921 8 N -0.887 5.887 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 S 2.788 3.212 14 O -0.997 6.997 15 O -0.984 6.984 16 N -1.124 6.124 17 C 0.155 3.845 18 C -0.073 4.073 19 C -0.126 4.126 20 C -0.094 4.094 21 C -0.197 4.197 22 C 0.095 3.905 23 O -0.308 6.308 24 C 0.027 3.973 25 C 0.096 3.904 26 O -0.470 6.470 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.821 -2.501 13.653 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.826 5.826 4 C 0.089 3.911 5 C -0.582 4.582 6 H 0.105 0.895 7 C -0.125 4.125 8 N -0.524 5.524 9 Si 0.692 3.308 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.796 3.204 14 O -0.981 6.981 15 O -0.967 6.967 16 N -0.882 5.882 17 C 0.030 3.970 18 C -0.075 4.075 19 C -0.145 4.145 20 C -0.112 4.112 21 C -0.217 4.217 22 C 0.050 3.950 23 O -0.221 6.221 24 C -0.068 4.068 25 C 0.050 3.950 26 O -0.278 6.278 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.533 -1.808 13.248 14.470 hybrid contribution 0.100 0.229 0.031 0.252 sum 5.633 -1.578 13.280 14.511 Atomic orbital electron populations 1.22214 0.97028 1.01506 1.02174 1.20995 0.93388 0.82472 1.02685 1.57492 1.78892 1.23222 1.22980 1.19592 0.98224 0.92228 0.81048 1.21446 1.05841 1.22835 1.08084 0.89493 1.24841 0.94651 0.96400 0.96610 1.69910 1.21679 1.42121 1.18718 0.87021 0.81755 0.83239 0.78823 1.19755 1.21137 1.18876 1.01643 0.72563 0.73623 0.72589 1.93556 1.69607 1.76516 1.58448 1.93558 1.86106 1.31382 1.85682 1.55945 1.25050 1.68560 1.38674 1.20421 0.81867 1.01326 0.93347 1.20187 0.96900 0.92589 0.97808 1.21041 0.96250 0.98511 0.98744 1.20907 0.94534 0.96989 0.98763 1.21115 1.01878 0.93050 1.05614 1.19454 0.92921 0.85770 0.96877 1.86165 1.32474 1.30150 1.73286 1.23045 0.83694 1.03712 0.96387 1.17612 0.90965 0.88341 0.98127 1.84987 1.68330 1.35883 1.38644 0.92676 0.92328 0.92195 0.89634 0.91695 0.94810 0.93913 0.92530 0.76370 0.89665 0.86310 0.85082 0.85579 0.85370 0.88337 0.92730 0.92905 0.76331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.13 2.18 6.01 -4.04 -0.02 2.15 16 3 N -0.99 -19.09 2.84 -115.67 -0.33 -19.42 16 4 C 0.21 4.79 4.54 -5.20 -0.02 4.77 16 5 C -0.54 -13.78 8.50 -34.44 -0.29 -14.08 16 6 H 0.09 2.35 6.97 -52.48 -0.37 1.98 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -25.50 13.96 55.43 0.77 -24.72 16 9 Si 0.86 20.50 27.40 -169.99 -4.66 15.85 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.26 -6.02 6.64 56.52 0.38 -5.64 16 13 S 2.79 52.34 6.11 -107.50 -0.66 51.69 16 14 O -1.00 -19.24 17.08 -57.17 -0.98 -20.22 16 15 O -0.98 -21.42 16.10 -57.17 -0.92 -22.34 16 16 N -1.12 -17.97 6.04 -11.66 -0.07 -18.04 16 17 C 0.16 2.76 5.94 -5.20 -0.03 2.73 16 18 C -0.07 -1.14 5.29 -104.50 -0.55 -1.70 16 19 C -0.13 -1.73 9.66 -39.57 -0.38 -2.11 16 20 C -0.09 -1.09 10.04 -39.57 -0.40 -1.49 16 21 C -0.20 -2.32 9.04 -39.46 -0.36 -2.68 16 22 C 0.10 1.35 6.70 -39.12 -0.26 1.09 16 23 O -0.31 -4.11 10.28 -34.21 -0.35 -4.46 16 24 C 0.03 0.23 9.81 101.05 0.99 1.22 16 25 C 0.10 1.51 6.69 -39.12 -0.26 1.25 16 26 O -0.47 -7.64 12.52 -34.20 -0.43 -8.07 16 27 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 31 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 32 H 0.03 0.76 7.44 -51.93 -0.39 0.37 16 33 H 0.04 1.01 6.07 -51.93 -0.32 0.69 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.40 5.34 8.65 -34.47 -0.30 5.04 16 36 H 0.09 1.58 7.59 -51.93 -0.39 1.19 16 37 H 0.12 2.49 5.28 -51.93 -0.27 2.22 16 38 H 0.13 1.63 8.04 -52.49 -0.42 1.21 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.15 6.30 -52.49 -0.33 0.81 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 43 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 44 H 0.38 4.49 9.06 45.56 0.41 4.90 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -33.58 376.43 -8.51 -42.09 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.26 Total: 10.98 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.31 Total: -9.00 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.37 Total: -62.18 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -2.68 Total: -55.09 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.66 Total: 15.85 kcal Atomic # 16 Polarization: 52.34 SS G_CDS: -0.66 Total: 51.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.58 -8.51 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800058696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.325 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds