Wall clock time and date at job start Wed Apr 1 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35692 * 116.99875 * 2 1 4 4 C 1.39262 * 120.13596 * 179.97438 * 3 2 1 5 5 C 1.38648 * 117.91861 * 179.97438 * 4 3 2 6 6 C 1.38762 * 118.01611 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.01045 * 180.02562 * 6 5 4 8 8 O 1.45206 * 109.47317 * 359.97438 * 7 6 5 9 9 C 1.34226 * 117.00074 * 180.02562 * 8 7 6 10 10 O 1.20825 * 120.00352 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99946 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.47436 * 179.97438 * 11 9 8 13 13 C 1.38300 * 119.93634 * 269.73208 * 12 11 9 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31556 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47529 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47049 * 119.99936 * 21 19 17 24 24 H 1.48497 * 109.46877 * 239.99598 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 N 1.31819 * 119.97668 * 0.27029 * 6 5 4 28 28 N 1.28344 * 122.26033 * 359.42925 * 27 6 5 29 29 H 1.09005 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47113 * 299.99779 * 1 2 3 31 31 H 1.08995 * 109.47024 * 60.00432 * 1 2 3 32 32 H 1.08002 * 121.04496 * 359.95192 * 4 3 2 33 33 H 1.07996 * 120.99349 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.47398 * 239.99548 * 7 6 5 35 35 H 1.09003 * 109.47495 * 119.99830 * 7 6 5 36 36 H 1.08999 * 109.47119 * 60.00078 * 11 9 8 37 37 H 1.09004 * 109.47334 * 300.00224 * 11 9 8 38 38 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 39 39 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 40 40 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 42 42 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4356 1.2853 0.0005 5 6 4.0167 2.5441 0.0000 6 6 3.1777 3.6493 -0.0006 7 6 3.7614 5.0387 -0.0018 8 8 5.2110 4.9547 -0.0016 9 6 5.8885 6.1134 -0.0021 10 8 5.2902 7.1632 -0.0031 11 6 7.3955 6.1051 -0.0013 12 6 7.9057 7.5231 -0.0027 13 6 8.1452 8.1693 -1.2018 14 6 8.6073 9.4707 -1.2063 15 6 8.8427 10.1266 -0.0050 16 8 9.3032 11.4035 -0.0061 17 6 9.4016 12.0199 1.1890 18 1 9.1983 11.4722 2.0973 19 6 9.7639 13.3568 1.2519 20 7 10.0111 14.0240 0.1454 21 14 9.9010 14.2103 2.9078 22 1 9.5737 13.2473 3.9898 23 1 11.2866 14.7116 3.0931 24 1 8.9513 15.3509 2.9569 25 6 8.6066 9.4731 1.1975 26 6 8.1392 8.1736 1.1954 27 7 1.8700 3.4835 0.0049 28 7 1.3269 2.3207 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 4.0424 0.3918 0.0017 33 1 5.0904 2.6609 -0.0001 34 1 3.4287 5.5734 0.8879 35 1 3.4282 5.5720 -0.8921 36 1 7.7564 5.5887 -0.8908 37 1 7.7556 5.5899 0.8892 38 1 7.9668 7.6569 -2.1357 39 1 8.7900 9.9761 -2.1431 40 1 10.2650 14.9592 0.1895 41 1 8.7892 9.9804 2.1333 42 1 7.9550 7.6650 2.1301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800455015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:31 Heat of formation + Delta-G solvation = -58.710064 kcal Electronic energy + Delta-G solvation = -27428.988574 eV Core-core repulsion = 23148.667135 eV Total energy + Delta-G solvation = -4280.321439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75402 -40.55151 -39.09405 -38.91546 -37.08344 -36.25909 -33.79369 -32.96006 -32.52177 -31.53153 -30.21076 -28.47236 -27.86575 -26.62610 -25.19254 -24.61711 -23.40913 -22.03631 -21.65107 -20.24175 -19.08007 -18.23544 -18.03332 -17.44319 -17.26978 -17.00174 -16.86693 -16.58139 -15.42286 -15.11943 -15.05131 -14.67424 -14.61039 -14.57321 -14.36853 -13.75824 -13.68028 -13.54622 -13.41284 -12.80406 -12.75374 -12.61918 -12.48812 -12.08591 -11.92393 -11.76430 -11.58865 -11.31915 -11.09655 -10.94955 -10.83786 -10.66176 -10.64942 -10.44610 -10.41781 -10.10753 -9.45971 -9.36315 -8.86067 -8.20989 -7.24119 -6.47704 -4.06262 0.28582 0.46499 1.95846 2.20105 2.25984 2.36151 2.55798 3.00805 3.11335 3.13323 3.18638 3.66571 3.81362 3.94912 4.13144 4.42211 4.50381 4.51546 4.74308 4.79670 4.81711 4.94005 4.94414 5.04323 5.09976 5.13501 5.15663 5.19635 5.26402 5.46944 5.56667 5.61741 5.66648 5.78680 6.16980 6.27504 6.36561 6.47866 6.65145 6.85997 7.01256 7.18150 7.30091 7.40774 7.75800 7.78805 7.97358 8.14876 8.97946 9.67053 10.70148 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.001563 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.346551 B =17910.280335 C =18247.497013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.301 6.301 3 C 0.259 3.741 4 C -0.133 4.133 5 C -0.063 4.063 6 C 0.039 3.961 7 C 0.127 3.873 8 O -0.367 6.367 9 C 0.458 3.542 10 O -0.483 6.483 11 C -0.047 4.047 12 C -0.187 4.187 13 C -0.056 4.056 14 C -0.192 4.192 15 C 0.160 3.840 16 O -0.175 6.175 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.233 4.233 26 C -0.052 4.052 27 N -0.197 5.197 28 N -0.295 5.295 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.128 0.872 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 -27.368 0.202 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.205 6.205 3 C 0.074 3.926 4 C -0.163 4.163 5 C -0.091 4.091 6 C -0.108 4.108 7 C 0.052 3.948 8 O -0.284 6.284 9 C 0.300 3.700 10 O -0.367 6.367 11 C -0.084 4.084 12 C -0.188 4.188 13 C -0.074 4.074 14 C -0.211 4.211 15 C 0.106 3.894 16 O -0.078 6.078 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.253 4.253 26 C -0.070 4.070 27 N -0.042 5.042 28 N -0.151 5.151 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.329 -26.292 -0.039 29.477 hybrid contribution 0.980 -0.110 0.873 1.317 sum -12.349 -26.402 0.834 29.159 Atomic orbital electron populations 1.23036 0.76364 1.03692 1.03045 1.86246 1.23554 1.23241 1.87434 1.21541 0.91121 0.87172 0.92791 1.21620 0.92236 1.00105 1.02323 1.22219 1.03278 0.90482 0.93073 1.22304 0.91814 0.96520 1.00186 1.21154 0.77460 0.91142 1.05071 1.86376 1.20075 1.36699 1.85292 1.24295 0.91954 0.80996 0.72779 1.90745 1.70367 1.32308 1.43253 1.20105 0.85426 0.97480 1.05426 1.18614 1.11548 0.94664 0.94004 1.20425 0.97055 0.93658 0.96266 1.20167 1.09315 0.95333 0.96305 1.19411 0.90653 0.86083 0.93304 1.83974 1.70501 1.20215 1.33146 1.21399 1.48505 0.93799 0.83105 0.88917 1.25305 0.96450 0.95404 0.99331 1.70048 1.42572 1.09943 1.26953 0.85635 0.78306 0.79352 0.80068 1.19068 1.20113 1.20101 1.21116 1.09783 0.95894 0.98485 1.20534 0.96329 0.94042 0.96130 1.72588 1.10060 1.13999 1.07509 1.73102 1.31232 0.93957 1.16810 0.87972 0.91774 0.91767 0.82225 0.81334 0.88360 0.88337 0.87615 0.87652 0.87152 0.86386 0.92010 0.85436 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.40 101.05 1.05 1.24 16 2 O -0.30 -2.42 10.49 -18.78 -0.20 -2.62 16 3 C 0.26 2.38 7.57 -16.95 -0.13 2.25 16 4 C -0.13 -0.94 10.16 -39.05 -0.40 -1.34 16 5 C -0.06 -0.46 9.50 -39.24 -0.37 -0.84 16 6 C 0.04 0.38 6.87 -82.41 -0.57 -0.19 16 7 C 0.13 1.26 6.02 36.00 0.22 1.48 16 8 O -0.37 -3.66 8.73 -39.25 -0.34 -4.01 16 9 C 0.46 5.79 7.95 36.00 0.29 6.07 16 10 O -0.48 -8.15 15.78 -18.75 -0.30 -8.44 16 11 C -0.05 -0.52 5.94 -29.04 -0.17 -0.70 16 12 C -0.19 -3.02 4.38 -104.58 -0.46 -3.48 16 13 C -0.06 -0.97 9.69 -39.61 -0.38 -1.35 16 14 C -0.19 -4.02 9.99 -39.39 -0.39 -4.42 16 15 C 0.16 3.85 6.65 -39.10 -0.26 3.59 16 16 O -0.18 -5.00 9.76 0.07 0.00 -5.00 16 17 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 18 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.14 13.67 55.48 0.76 -24.38 16 21 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 27 N -0.20 -2.28 11.42 33.61 0.38 -1.90 16 28 N -0.29 -3.27 10.41 30.50 0.32 -2.96 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.17 0.89 7.07 -52.49 -0.37 0.52 16 34 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 35 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.11 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 42 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -34.39 375.34 -5.58 -39.97 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.72 Total: 2.26 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.13 Total: -14.02 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 1.46 Total: -29.24 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.83 Total: -20.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.39 -5.58 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800455015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.738 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds