Wall clock time and date at job start Wed Apr 1 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35692 * 116.99875 * 2 1 4 4 C 1.39262 * 120.13596 * 179.97438 * 3 2 1 5 5 C 1.38648 * 117.91861 * 179.97438 * 4 3 2 6 6 C 1.38762 * 118.01611 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.01045 * 180.02562 * 6 5 4 8 8 O 1.45206 * 109.47317 * 359.97438 * 7 6 5 9 9 C 1.34226 * 117.00074 * 180.02562 * 8 7 6 10 10 O 1.20825 * 120.00352 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99946 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.47436 * 179.97438 * 11 9 8 13 13 C 1.38300 * 119.93634 * 269.73208 * 12 11 9 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31556 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47529 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47049 * 119.99936 * 21 19 17 24 24 H 1.48497 * 109.46877 * 239.99598 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 N 1.31819 * 119.97668 * 0.27029 * 6 5 4 28 28 N 1.28344 * 122.26033 * 359.42925 * 27 6 5 29 29 H 1.09005 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47113 * 299.99779 * 1 2 3 31 31 H 1.08995 * 109.47024 * 60.00432 * 1 2 3 32 32 H 1.08002 * 121.04496 * 359.95192 * 4 3 2 33 33 H 1.07996 * 120.99349 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.47398 * 239.99548 * 7 6 5 35 35 H 1.09003 * 109.47495 * 119.99830 * 7 6 5 36 36 H 1.08999 * 109.47119 * 60.00078 * 11 9 8 37 37 H 1.09004 * 109.47334 * 300.00224 * 11 9 8 38 38 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 39 39 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 40 40 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 42 42 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4356 1.2853 0.0005 5 6 4.0167 2.5441 0.0000 6 6 3.1777 3.6493 -0.0006 7 6 3.7614 5.0387 -0.0018 8 8 5.2110 4.9547 -0.0016 9 6 5.8885 6.1134 -0.0021 10 8 5.2902 7.1632 -0.0031 11 6 7.3955 6.1051 -0.0013 12 6 7.9057 7.5231 -0.0027 13 6 8.1452 8.1693 -1.2018 14 6 8.6073 9.4707 -1.2063 15 6 8.8427 10.1266 -0.0050 16 8 9.3032 11.4035 -0.0061 17 6 9.4016 12.0199 1.1890 18 1 9.1983 11.4722 2.0973 19 6 9.7639 13.3568 1.2519 20 7 10.0111 14.0240 0.1454 21 14 9.9010 14.2103 2.9078 22 1 9.5737 13.2473 3.9898 23 1 11.2866 14.7116 3.0931 24 1 8.9513 15.3509 2.9569 25 6 8.6066 9.4731 1.1975 26 6 8.1392 8.1736 1.1954 27 7 1.8700 3.4835 0.0049 28 7 1.3269 2.3207 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 4.0424 0.3918 0.0017 33 1 5.0904 2.6609 -0.0001 34 1 3.4287 5.5734 0.8879 35 1 3.4282 5.5720 -0.8921 36 1 7.7564 5.5887 -0.8908 37 1 7.7556 5.5899 0.8892 38 1 7.9668 7.6569 -2.1357 39 1 8.7900 9.9761 -2.1431 40 1 10.2650 14.9592 0.1895 41 1 8.7892 9.9804 2.1333 42 1 7.9550 7.6650 2.1301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800455015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:30 Heat of formation + Delta-G solvation = -82.811766 kcal Electronic energy + Delta-G solvation = -27430.033702 eV Core-core repulsion = 23148.667135 eV Total energy + Delta-G solvation = -4281.366567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42370 -41.56356 -40.66340 -39.59408 -38.49921 -37.49346 -34.47653 -34.39297 -33.63737 -32.90739 -31.77253 -29.28026 -28.59537 -27.92077 -26.96857 -25.21011 -24.17049 -23.63592 -22.87326 -21.50513 -19.85019 -19.69538 -18.94143 -18.86144 -18.32349 -17.96576 -17.79173 -17.30840 -16.43662 -16.38187 -16.17838 -15.87844 -15.63313 -15.62385 -15.49357 -15.16345 -15.07317 -14.58728 -14.38697 -14.27663 -14.08375 -13.63685 -13.60013 -12.98580 -12.92671 -12.86548 -12.61966 -12.53301 -12.48879 -12.29435 -12.24797 -12.09703 -11.96647 -11.52241 -11.26350 -11.16878 -10.80190 -10.76079 -10.14071 -9.75552 -8.93333 -8.47499 -6.15608 -0.31297 -0.18293 0.58304 0.62958 1.28489 1.34867 1.39742 1.49221 1.53322 1.86573 2.17554 2.34158 2.79937 2.97764 3.17696 3.21025 3.52531 3.54695 3.78724 3.85253 3.93296 4.06264 4.07454 4.15599 4.20617 4.31888 4.35678 4.40444 4.49277 4.52409 4.60067 4.71350 4.74902 4.81912 4.84452 5.06128 5.08218 5.15351 5.29920 5.39107 5.57167 5.72701 5.75534 5.90436 6.03281 6.23882 6.80375 6.97413 7.46507 7.78345 8.75985 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.001563 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.346551 B =17910.280335 C =18247.497013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.305 6.305 3 C 0.248 3.752 4 C -0.123 4.123 5 C -0.057 4.057 6 C 0.033 3.967 7 C 0.131 3.869 8 O -0.345 6.345 9 C 0.468 3.532 10 O -0.533 6.533 11 C -0.045 4.045 12 C -0.160 4.160 13 C -0.052 4.052 14 C -0.208 4.208 15 C 0.115 3.885 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.019 2.981 22 H -0.251 1.251 23 H -0.266 1.266 24 H -0.270 1.270 25 C -0.247 4.247 26 C -0.054 4.054 27 N -0.231 5.231 28 N -0.322 5.322 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.194 0.806 33 H 0.197 0.803 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.112 0.888 40 H 0.272 0.728 41 H 0.117 0.883 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 -31.836 1.212 34.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.209 6.209 3 C 0.062 3.938 4 C -0.152 4.152 5 C -0.085 4.085 6 C -0.115 4.115 7 C 0.055 3.945 8 O -0.262 6.262 9 C 0.312 3.688 10 O -0.421 6.421 11 C -0.081 4.081 12 C -0.160 4.160 13 C -0.070 4.070 14 C -0.228 4.228 15 C 0.064 3.936 16 O -0.140 6.140 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.175 1.175 23 H -0.191 1.191 24 H -0.195 1.195 25 C -0.266 4.266 26 C -0.072 4.072 27 N -0.075 5.075 28 N -0.178 5.178 29 H 0.149 0.851 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.211 0.789 33 H 0.214 0.786 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.414 -30.856 0.969 33.659 hybrid contribution 0.823 0.799 0.450 1.232 sum -12.590 -30.057 1.419 32.618 Atomic orbital electron populations 1.23227 0.75319 1.05463 1.02522 1.86252 1.24662 1.22688 1.87273 1.21880 0.92243 0.87052 0.92611 1.22025 0.91493 1.01269 1.00385 1.22508 1.04230 0.89702 0.92017 1.22312 0.91729 0.96975 1.00515 1.21090 0.77150 0.91532 1.04713 1.86341 1.20054 1.35175 1.84588 1.24437 0.92428 0.80669 0.71293 1.90769 1.71432 1.34099 1.45822 1.20268 0.84125 0.94186 1.09559 1.19227 1.07260 0.96900 0.92644 1.20940 0.95094 0.92092 0.98856 1.20465 1.09945 0.97119 0.95246 1.20002 0.92589 0.85448 0.95518 1.83936 1.73922 1.22546 1.33632 1.21869 1.48857 0.94593 0.83634 0.88104 1.26592 0.95883 0.95837 1.03733 1.70191 1.45475 1.10450 1.29758 0.84526 0.78644 0.78057 0.74948 1.17468 1.19107 1.19532 1.21245 1.10475 0.97678 0.97186 1.20992 0.94927 0.92567 0.98735 1.72492 1.11316 1.14640 1.09089 1.72997 1.32178 0.94434 1.18189 0.85057 0.92319 0.92301 0.78880 0.78578 0.88900 0.88809 0.83402 0.83646 0.83016 0.86990 0.91852 0.86507 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.40 113.37 1.18 1.47 16 2 O -0.30 -4.34 10.49 -90.11 -0.95 -5.29 16 3 C 0.25 4.11 7.57 84.86 0.64 4.75 16 4 C -0.12 -1.31 10.16 22.61 0.23 -1.08 16 5 C -0.06 -0.63 9.50 22.49 0.21 -0.42 16 6 C 0.03 0.57 6.87 42.69 0.29 0.87 16 7 C 0.13 2.31 6.02 71.24 0.43 2.74 16 8 O -0.35 -5.35 8.73 -51.37 -0.45 -5.79 16 9 C 0.47 9.67 7.95 71.23 0.57 10.23 16 10 O -0.53 -16.59 15.78 21.97 0.35 -16.25 16 11 C -0.04 -0.71 5.94 29.10 0.17 -0.53 16 12 C -0.16 -4.48 4.38 -19.83 -0.09 -4.57 16 13 C -0.05 -1.66 9.69 22.25 0.22 -1.44 16 14 C -0.21 -8.89 9.99 22.39 0.22 -8.67 16 15 C 0.11 5.79 6.65 22.58 0.15 5.94 16 16 O -0.23 -14.32 9.76 -22.66 -0.22 -14.54 16 17 C -0.41 -24.45 9.49 67.92 0.64 -23.80 16 18 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 19 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 20 N -0.92 -57.15 13.67 21.61 0.30 -56.85 16 21 Si 1.02 43.40 29.55 68.60 2.03 45.42 16 22 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 C -0.25 -10.76 9.17 22.39 0.21 -10.56 16 26 C -0.05 -1.79 9.69 22.25 0.22 -1.57 16 27 N -0.23 -5.22 11.42 -47.59 -0.54 -5.76 16 28 N -0.32 -6.96 10.41 -170.22 -1.77 -8.73 16 29 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 31 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 32 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.20 0.98 7.07 -2.91 -0.02 0.96 16 34 H 0.09 1.76 8.13 -2.38 -0.02 1.74 16 35 H 0.09 1.76 8.13 -2.39 -0.02 1.75 16 36 H 0.15 1.30 8.08 -2.39 -0.02 1.28 16 37 H 0.15 1.35 8.08 -2.38 -0.02 1.33 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -83.92 375.34 5.57 -78.36 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.07 Total: 16.94 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 5.76 Total: -27.51 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.02 Total: -71.35 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.27 Total: -41.87 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -83.92 5.57 -78.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800455015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.456 kcal (2) G-P(sol) polarization free energy of solvation -83.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds