Wall clock time and date at job start Wed Apr 1 2020 02:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47086 * 125.56101 * 2 1 4 4 C 1.54097 * 103.77900 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.64037 * 241.31548 * 4 3 2 6 6 C 1.53000 * 110.51846 * 118.63527 * 4 3 2 7 7 O 1.45207 * 109.46816 * 180.90466 * 6 4 3 8 8 C 1.34861 * 116.99619 * 184.62395 * 7 6 4 9 9 O 1.21593 * 120.00458 * 354.76081 * 8 7 6 10 10 C 1.46720 * 119.99701 * 175.03160 * 8 7 6 11 11 C 1.36214 * 125.44892 * 184.84235 * 10 8 7 12 12 C 1.41656 * 107.74121 * 180.02562 * 11 10 8 13 13 C 1.40043 * 133.33602 * 179.97438 * 12 11 10 14 14 C 1.36564 * 119.82967 * 179.97438 * 13 12 11 15 15 C 1.38861 * 120.60212 * 0.09144 * 14 13 12 16 16 C 1.37842 * 120.63783 * 359.92833 * 15 14 13 17 17 C 1.39087 * 119.81581 * 0.02562 * 16 15 14 18 18 N 1.37819 * 133.15073 * 180.33938 * 17 16 15 19 19 C 1.36875 * 125.62149 * 359.96743 * 18 17 16 20 20 H 1.08007 * 119.99904 * 140.12549 * 19 18 17 21 21 C 1.39014 * 120.00161 * 320.12501 * 19 18 17 22 22 N 1.31345 * 120.00089 * 157.42590 * 21 19 18 23 23 Si 1.86800 * 120.00054 * 337.43509 * 21 19 18 24 24 H 1.48501 * 109.47562 * 95.85778 * 23 21 19 25 25 H 1.48496 * 109.47131 * 215.85913 * 23 21 19 26 26 H 1.48504 * 109.47031 * 335.85622 * 23 21 19 27 27 O 1.45704 * 104.00474 * 0.02562 * 4 3 2 28 28 C 1.33765 * 109.47645 * 359.97438 * 27 4 3 29 29 O 1.21515 * 123.06740 * 179.97438 * 28 27 4 30 30 H 1.09007 * 109.47365 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47295 * 299.97244 * 1 2 3 32 32 H 1.09000 * 109.47302 * 59.97468 * 1 2 3 33 33 H 1.09004 * 110.56364 * 61.43119 * 3 2 1 34 34 H 1.08997 * 110.57178 * 298.57966 * 3 2 1 35 35 H 1.09001 * 109.47355 * 60.90612 * 6 4 3 36 36 H 1.08998 * 109.46930 * 300.90351 * 6 4 3 37 37 H 1.08001 * 126.12398 * 0.02562 * 11 10 8 38 38 H 1.07998 * 120.08498 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.69865 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.67835 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.08755 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99720 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3203 1.1965 0.0000 4 6 3.7513 0.6247 -0.0007 5 1 4.2901 0.9366 0.8941 6 6 4.5037 1.0637 -1.2585 7 8 5.8399 0.4956 -1.2462 8 6 6.6711 0.8644 -2.2421 9 8 6.2613 1.5633 -3.1487 10 6 8.0686 0.4174 -2.2346 11 6 9.0241 0.7967 -3.1282 12 6 10.2304 0.1444 -2.7731 13 6 11.5214 0.1493 -3.3157 14 6 12.5043 -0.6019 -2.7373 15 6 12.2357 -1.3742 -1.6149 16 6 10.9728 -1.3957 -1.0629 17 6 9.9555 -0.6382 -1.6337 18 7 8.6273 -0.4522 -1.3165 19 6 7.9691 -1.0350 -0.2674 20 1 7.2542 -0.4635 0.3061 21 6 8.2205 -2.3624 0.0599 22 7 7.9649 -2.7998 1.2717 23 14 8.9224 -3.5241 -1.2237 24 1 10.3979 -3.5961 -1.0723 25 1 8.3392 -4.8771 -1.0384 26 1 8.5879 -3.0225 -2.5808 27 8 3.5541 -0.8189 -0.0016 28 6 2.2443 -1.0902 -0.0010 29 8 1.8015 -2.2218 -0.0020 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 2.1460 1.7918 0.8963 34 1 2.1460 1.7920 -0.8961 35 1 4.5715 2.1514 -1.2803 36 1 3.9688 0.7152 -2.1420 37 1 8.8867 1.4736 -3.9585 38 1 11.7394 0.7463 -4.1889 39 1 13.4992 -0.5962 -3.1573 40 1 13.0241 -1.9630 -1.1698 41 1 10.7739 -1.9992 -0.1896 42 1 8.1400 -3.7262 1.4999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802935965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:08 Heat of formation + Delta-G solvation = -94.807634 kcal Electronic energy + Delta-G solvation = -30101.314643 eV Core-core repulsion = 25819.427896 eV Total energy + Delta-G solvation = -4281.886747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79043 -42.49670 -41.04115 -38.66391 -37.84025 -37.47409 -36.57825 -35.45591 -33.15643 -32.77712 -30.95388 -30.19269 -28.88467 -27.00254 -26.72912 -25.15757 -23.68079 -22.85124 -22.45809 -22.04248 -20.99888 -20.13842 -19.01720 -18.66954 -18.33312 -18.00148 -17.64413 -17.29326 -17.20635 -16.74355 -16.28742 -16.11509 -15.65473 -15.38982 -15.16052 -15.10459 -14.98187 -14.79021 -14.61432 -14.15057 -14.01934 -13.75736 -13.66905 -13.52369 -13.31429 -13.19101 -13.07643 -12.77690 -12.49940 -12.32673 -12.04213 -12.00478 -11.95297 -11.76217 -11.71741 -11.48073 -11.30860 -10.43093 -10.03069 -9.09961 -8.89772 -8.71590 -6.46366 -0.21577 0.85995 0.99276 1.12833 1.21595 1.29332 1.32053 1.46680 1.62431 1.97239 2.09911 2.35402 2.41379 2.71014 3.05446 3.13453 3.28223 3.58293 3.88364 3.92071 4.00515 4.13679 4.22606 4.28804 4.35237 4.39085 4.53988 4.55092 4.64327 4.65886 4.74851 4.78986 4.87301 4.99615 5.09156 5.17487 5.25746 5.29399 5.35220 5.67680 5.77408 5.82173 5.95507 6.08782 6.19795 6.37874 6.62348 6.80874 6.84407 7.14185 8.20092 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.003554 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.838774 B = 7877.441218 C = 9172.593922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.626 5.626 3 C 0.087 3.913 4 C 0.065 3.935 5 H 0.138 0.862 6 C 0.049 3.951 7 O -0.343 6.343 8 C 0.548 3.452 9 O -0.527 6.527 10 C -0.048 4.048 11 C -0.142 4.142 12 C -0.144 4.144 13 C -0.070 4.070 14 C -0.150 4.150 15 C -0.110 4.110 16 C -0.142 4.142 17 C 0.034 3.966 18 N -0.279 5.279 19 C -0.348 4.348 20 H 0.108 0.892 21 C 0.056 3.944 22 N -0.850 5.850 23 Si 0.904 3.096 24 H -0.214 1.214 25 H -0.280 1.280 26 H -0.283 1.283 27 O -0.344 6.344 28 C 0.627 3.373 29 O -0.579 6.579 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.075 0.925 37 H 0.165 0.835 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.103 0.897 42 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 11.323 -3.065 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.375 5.375 3 C -0.034 4.034 4 C 0.010 3.990 5 H 0.156 0.844 6 C -0.024 4.024 7 O -0.259 6.259 8 C 0.396 3.604 9 O -0.419 6.419 10 C -0.159 4.159 11 C -0.169 4.169 12 C -0.149 4.149 13 C -0.088 4.088 14 C -0.169 4.169 15 C -0.130 4.130 16 C -0.162 4.162 17 C -0.080 4.080 18 N 0.057 4.943 19 C -0.476 4.476 20 H 0.126 0.874 21 C -0.155 4.155 22 N -0.480 5.480 23 Si 0.727 3.273 24 H -0.137 1.137 25 H -0.206 1.206 26 H -0.209 1.209 27 O -0.254 6.254 28 C 0.382 3.618 29 O -0.468 6.468 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.183 0.817 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.164 0.836 41 H 0.121 0.879 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.296 10.499 -2.810 12.560 hybrid contribution -0.397 -1.032 -0.040 1.107 sum -6.693 9.466 -2.850 11.939 Atomic orbital electron populations 1.21814 0.72646 1.04026 1.04686 1.48161 1.08690 1.05133 1.75524 1.23061 0.83789 0.87870 1.08730 1.24266 0.98318 0.75761 1.00640 0.84403 1.23714 0.79824 1.00933 0.97964 1.86929 1.24906 1.65888 1.48185 1.19874 0.84861 0.76337 0.79377 1.90768 1.76744 1.37979 1.36360 1.19627 0.91431 1.07762 0.97092 1.20758 0.90460 1.05065 1.00612 1.18344 0.95865 1.02294 0.98358 1.20650 0.89603 0.98899 0.99694 1.20910 1.00339 0.98669 0.96966 1.21127 0.94551 1.00125 0.97190 1.20368 0.93135 1.01167 1.01492 1.18866 0.84705 1.03974 1.00408 1.40441 1.05518 1.30303 1.18082 1.19295 1.25263 0.96789 1.06221 0.87437 1.25854 0.94779 0.98011 0.96880 1.69730 1.41491 1.18597 1.18170 0.86561 0.82285 0.78613 0.79854 1.13703 1.20625 1.20853 1.87525 1.23507 1.28154 1.86220 1.18983 0.80498 0.86090 0.76253 1.90955 1.74620 1.23161 1.58025 0.91379 0.88459 0.88762 0.83873 0.85240 0.85147 0.90622 0.81710 0.83190 0.82404 0.83578 0.87854 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.43 11.23 127.77 1.43 2.87 16 2 N -0.63 -13.38 3.36 -976.53 -3.28 -16.66 16 3 C 0.09 1.16 7.34 86.64 0.64 1.80 16 4 C 0.07 1.61 4.17 30.97 0.13 1.74 16 5 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 6 C 0.05 1.37 5.04 71.98 0.36 1.73 16 7 O -0.34 -14.24 7.95 -55.87 -0.44 -14.68 16 8 C 0.55 23.88 7.90 70.04 0.55 24.43 16 9 O -0.53 -21.99 16.63 19.53 0.32 -21.66 16 10 C -0.05 -2.25 6.76 39.88 0.27 -1.98 16 11 C -0.14 -5.91 10.55 22.64 0.24 -5.68 16 12 C -0.14 -5.98 6.16 -21.34 -0.13 -6.11 16 13 C -0.07 -2.25 10.06 22.32 0.22 -2.03 16 14 C -0.15 -4.38 9.97 22.03 0.22 -4.16 16 15 C -0.11 -3.70 10.02 22.33 0.22 -3.48 16 16 C -0.14 -6.13 6.71 22.38 0.15 -5.97 16 17 C 0.03 1.63 5.21 39.07 0.20 1.84 16 18 N -0.28 -14.33 2.45 -331.41 -0.81 -15.15 16 19 C -0.35 -19.36 9.20 84.09 0.77 -18.59 16 20 H 0.11 6.32 6.91 -2.91 -0.02 6.30 16 21 C 0.06 3.10 4.82 84.95 0.41 3.51 16 22 N -0.85 -47.75 13.95 21.67 0.30 -47.45 16 23 Si 0.90 44.08 24.33 68.60 1.67 45.75 16 24 H -0.21 -9.31 5.49 99.48 0.55 -8.77 16 25 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.28 -14.93 7.11 99.48 0.71 -14.23 16 27 O -0.34 -13.20 10.78 -45.36 -0.49 -13.69 16 28 C 0.63 22.12 8.85 129.91 1.15 23.27 16 29 O -0.58 -25.53 17.31 19.64 0.34 -25.19 16 30 H 0.07 1.23 7.53 -2.38 -0.02 1.21 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.14 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.13 0.94 7.73 -2.39 -0.02 0.92 16 35 H 0.13 2.60 8.11 -2.39 -0.02 2.58 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.17 5.83 8.06 -2.91 -0.02 5.81 16 38 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 41 H 0.10 4.73 5.63 -2.91 -0.02 4.72 16 42 H 0.29 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -82.55 357.63 5.36 -77.19 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.91 Total: 18.33 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 6.85 Total: 13.20 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -3.79 Total: -79.26 kcal Atomic # 8 Polarization: -74.94 SS G_CDS: -0.27 Total: -75.21 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.67 Total: 45.75 kcal Total: -82.55 5.36 -77.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802935965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.620 kcal (2) G-P(sol) polarization free energy of solvation -82.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds