Wall clock time and date at job start Wed Apr 1 2020 02:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47129 * 2 1 4 4 C 1.50697 * 109.47202 * 120.00286 * 2 1 3 5 5 O 1.20831 * 119.99855 * 119.99881 * 4 2 1 6 6 O 1.34226 * 120.00226 * 299.99836 * 4 2 1 7 7 C 1.45195 * 117.00304 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47652 * 180.02562 * 7 6 4 9 9 O 1.21302 * 119.99431 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00352 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99592 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00602 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99428 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99861 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00211 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.46893 * 90.00443 * 15 13 11 17 17 H 1.48504 * 109.47071 * 210.00416 * 15 13 11 18 18 H 1.48503 * 109.46856 * 330.00119 * 15 13 11 19 19 N 1.46504 * 109.46999 * 240.00369 * 2 1 3 20 20 C 1.36539 * 118.86254 * 299.73183 * 19 2 1 21 21 C 1.34292 * 122.41333 * 180.28610 * 20 19 2 22 22 C 1.46373 * 119.41561 * 359.97438 * 21 20 19 23 23 C 1.39569 * 122.04286 * 179.97438 * 22 21 20 24 24 C 1.36735 * 119.48990 * 180.02562 * 23 22 21 25 25 C 1.38889 * 120.89042 * 0.02562 * 24 23 22 26 26 C 1.36749 * 120.88530 * 359.97438 * 25 24 23 27 27 C 1.39469 * 119.50333 * 0.02562 * 26 25 24 28 28 C 1.34784 * 118.86431 * 119.99914 * 19 2 1 29 29 O 1.21785 * 120.38230 * 359.74168 * 28 19 2 30 30 H 1.08995 * 109.46980 * 299.99768 * 1 2 3 31 31 H 1.09000 * 109.47245 * 59.99614 * 1 2 3 32 32 H 1.09003 * 109.47411 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47231 * 300.00264 * 7 6 4 34 34 H 1.09002 * 109.47274 * 60.00110 * 7 6 4 35 35 H 0.96989 * 120.00177 * 359.97438 * 10 8 7 36 36 H 0.96997 * 119.99667 * 179.97438 * 14 13 11 37 37 H 1.08000 * 118.79168 * 0.28063 * 20 19 2 38 38 H 1.08004 * 120.29019 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.25620 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.55045 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.55877 * 179.97438 * 25 24 23 42 42 H 1.08005 * 120.24896 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6929 1.1194 6 8 1.7081 -0.2520 2.4495 7 6 2.2268 -0.9865 3.5895 8 6 1.7620 -0.3301 4.8639 9 8 1.0627 0.6599 4.8160 10 7 2.1241 -0.8423 6.0568 11 6 1.7016 -0.2447 7.2161 12 1 1.0790 0.6367 7.1735 13 6 2.0754 -0.7726 8.4459 14 7 1.6709 -0.1995 9.5572 15 14 3.1529 -2.2967 8.5196 16 1 4.5816 -1.8923 8.5386 17 1 2.8396 -3.0654 9.7510 18 1 2.8940 -3.1440 7.3278 19 7 2.0183 -0.6906 -1.1963 20 6 1.6789 -1.9993 -1.3865 21 6 2.0914 -2.7021 -2.4539 22 6 2.9359 -2.0542 -3.4586 23 6 3.3958 -2.7326 -4.5883 24 6 4.1827 -2.0763 -5.4937 25 6 4.5301 -0.7450 -5.3036 26 6 4.0939 -0.0555 -4.2062 27 6 3.2898 -0.6990 -3.2656 28 6 2.7916 -0.0136 -2.0682 29 8 3.0735 1.1535 -1.8642 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8626 -2.0133 3.5564 34 1 3.3163 -0.9863 3.5568 35 1 2.6836 -1.6337 6.0951 36 1 1.9315 -0.5682 10.4157 37 1 1.0559 -2.4872 -0.6515 38 1 1.8018 -3.7361 -2.5703 39 1 3.1323 -3.7680 -4.7461 40 1 4.5395 -2.6004 -6.3679 41 1 5.1531 -0.2477 -6.0323 42 1 4.3699 0.9796 -4.0688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805628586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:37 Heat of formation + Delta-G solvation = -96.530011 kcal Electronic energy + Delta-G solvation = -28819.006235 eV Core-core repulsion = 24537.044800 eV Total energy + Delta-G solvation = -4281.961435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89300 -40.47738 -38.89940 -38.35561 -37.31820 -36.27115 -34.24891 -34.10342 -31.88427 -31.83073 -30.95352 -29.58270 -28.70648 -25.61994 -24.69800 -24.25237 -23.66979 -22.04931 -21.11176 -19.72741 -18.82393 -18.66507 -18.21711 -17.74828 -17.61045 -16.67814 -16.36119 -15.87791 -15.59844 -15.47662 -15.33690 -14.98074 -14.91448 -14.43243 -14.22016 -13.83782 -13.49947 -13.37934 -13.16553 -13.12538 -12.97860 -12.69722 -12.57813 -12.35551 -12.25021 -12.13956 -11.88149 -11.80284 -11.41027 -11.30502 -10.70008 -10.68553 -10.67270 -10.38270 -10.09122 -9.88087 -9.72192 -9.43477 -8.73405 -8.33814 -8.06255 -6.43116 -3.96304 0.39000 0.62010 1.86121 1.87660 1.92931 2.46567 2.71591 2.94929 3.00209 3.09122 3.49079 3.65907 3.96903 4.00376 4.16451 4.23293 4.40658 4.43763 4.56221 4.59837 4.68501 4.75533 4.90291 4.97593 5.06002 5.12579 5.23983 5.29578 5.35100 5.45127 5.46654 5.52915 5.59886 5.60203 5.75457 5.88015 6.05637 6.08165 6.19605 6.26995 6.49728 6.78300 7.37806 7.49518 7.56889 7.96000 8.42823 8.79277 9.25225 9.59836 10.68987 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.002089 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.139367 B =13400.235844 C =13817.623257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.153 0.847 4 C 0.451 3.549 5 O -0.501 6.501 6 O -0.315 6.315 7 C 0.058 3.942 8 C 0.446 3.554 9 O -0.556 6.556 10 N -0.578 5.578 11 C -0.309 4.309 12 H 0.123 0.877 13 C 0.045 3.955 14 N -0.873 5.873 15 Si 0.879 3.121 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.268 1.268 19 N -0.506 5.506 20 C 0.138 3.862 21 C -0.209 4.209 22 C 0.013 3.987 23 C -0.128 4.128 24 C -0.082 4.082 25 C -0.143 4.143 26 C -0.046 4.046 27 C -0.155 4.155 28 C 0.551 3.449 29 O -0.522 6.522 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.373 0.627 36 H 0.276 0.724 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -8.124 -29.409 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.171 0.829 4 C 0.292 3.708 5 O -0.390 6.390 6 O -0.228 6.228 7 C -0.020 4.020 8 C 0.231 3.769 9 O -0.438 6.438 10 N -0.218 5.218 11 C -0.437 4.437 12 H 0.141 0.859 13 C -0.159 4.159 14 N -0.512 5.512 15 Si 0.705 3.295 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.194 1.194 19 N -0.223 5.223 20 C 0.018 3.982 21 C -0.232 4.232 22 C 0.012 3.988 23 C -0.146 4.146 24 C -0.100 4.100 25 C -0.162 4.162 26 C -0.064 4.064 27 C -0.158 4.158 28 C 0.346 3.654 29 O -0.400 6.400 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.206 0.794 36 H 0.087 0.913 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.066 -6.982 -29.009 29.909 hybrid contribution 1.077 -1.577 0.443 1.960 sum 3.143 -8.559 -28.566 29.986 Atomic orbital electron populations 1.22168 0.89668 1.04145 1.05572 1.20939 0.97611 0.99263 0.79748 0.82943 1.23684 0.78119 0.83216 0.85775 1.90702 1.35242 1.25734 1.87279 1.86540 1.68363 1.54382 1.13506 1.22831 0.99815 0.95667 0.83656 1.19126 0.86685 0.87623 0.83447 1.90616 1.40200 1.26692 1.86263 1.42026 1.46954 1.27351 1.05430 1.19426 1.30797 1.12541 0.80938 0.85947 1.25048 0.97692 0.98195 0.94951 1.69614 1.43991 1.39999 0.97602 0.86677 0.81336 0.82782 0.78686 1.19384 1.19896 1.19391 1.44870 1.45630 1.11312 1.20473 1.21313 0.96555 0.82908 0.97432 1.21391 1.05510 1.00746 0.95570 1.19140 0.93862 0.91834 0.94014 1.20875 0.99529 1.00297 0.93943 1.21076 0.95762 0.94594 0.98589 1.20899 1.01944 0.94911 0.98406 1.20832 0.93416 1.00243 0.91946 1.19752 1.04826 0.94536 0.96692 1.18208 0.77680 0.86325 0.83145 1.90880 1.57447 1.15618 1.76082 0.88114 0.90074 0.91225 0.89220 0.89268 0.79388 0.91335 0.82772 0.83309 0.84966 0.85503 0.85355 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.08 37.16 0.34 -1.05 16 2 C 0.13 1.50 3.09 -69.08 -0.21 1.29 16 3 H 0.15 1.88 6.81 -51.93 -0.35 1.52 16 4 C 0.45 6.47 7.03 36.00 0.25 6.72 16 5 O -0.50 -7.84 14.86 -18.75 -0.28 -8.12 16 6 O -0.31 -5.27 9.66 -45.89 -0.44 -5.72 16 7 C 0.06 0.99 5.94 36.00 0.21 1.21 16 8 C 0.45 10.04 7.86 -10.99 -0.09 9.95 16 9 O -0.56 -14.86 16.08 -14.12 -0.23 -15.09 16 10 N -0.58 -13.42 5.09 -10.96 -0.06 -13.47 16 11 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 12 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 13 C 0.05 1.21 5.50 -17.46 -0.10 1.11 16 14 N -0.87 -24.81 13.96 55.50 0.77 -24.04 16 15 Si 0.88 18.78 27.74 -169.99 -4.71 14.06 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 18 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 19 N -0.51 -5.90 2.37 -111.87 -0.26 -6.16 16 20 C 0.14 1.32 8.02 -16.85 -0.14 1.18 16 21 C -0.21 -1.78 10.03 -37.70 -0.38 -2.15 16 22 C 0.01 0.13 5.89 -104.93 -0.62 -0.49 16 23 C -0.13 -0.94 9.83 -39.63 -0.39 -1.33 16 24 C -0.08 -0.54 9.96 -39.88 -0.40 -0.94 16 25 C -0.14 -1.07 9.96 -39.88 -0.40 -1.47 16 26 C -0.05 -0.45 9.62 -39.66 -0.38 -0.83 16 27 C -0.15 -1.77 5.90 -104.83 -0.62 -2.39 16 28 C 0.55 7.30 7.62 -12.84 -0.10 7.20 16 29 O -0.52 -8.16 15.80 5.11 0.08 -8.08 16 30 H 0.10 0.95 8.11 -51.93 -0.42 0.52 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.51 7.14 -51.93 -0.37 0.14 16 33 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 34 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 35 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 36 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.15 1.21 7.03 -52.49 -0.37 0.85 16 38 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.14 1.30 7.80 -52.48 -0.41 0.89 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -35.29 366.76 -7.43 -42.72 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.67 Total: 9.01 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -3.16 Total: 9.35 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.45 Total: -43.67 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.87 Total: -37.00 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.29 -7.43 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805628586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.806 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds