Wall clock time and date at job start Wed Apr 1 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36833 * 119.68986 * 2 1 4 4 C 1.50697 * 120.15718 * 359.95451 * 3 2 1 5 5 O 1.45201 * 109.46944 * 179.97438 * 4 3 2 6 6 C 1.34804 * 116.99925 * 180.02562 * 5 4 3 7 7 O 1.21526 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.47288 * 120.00213 * 180.02562 * 6 5 4 9 9 C 1.39296 * 120.28530 * 354.84408 * 8 6 5 10 10 C 1.38205 * 120.08552 * 180.27690 * 9 8 6 11 11 C 1.38843 * 120.68130 * 359.73709 * 10 9 8 12 12 C 1.37598 * 120.58362 * 0.02562 * 11 10 9 13 13 C 1.40714 * 119.88597 * 359.97438 * 12 11 10 14 14 C 1.40856 * 120.32912 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99837 * 145.75634 * 14 13 12 16 16 C 1.40294 * 120.00588 * 325.75324 * 14 13 12 17 17 N 1.30622 * 119.99515 * 339.67606 * 16 14 13 18 18 Si 1.86794 * 120.00489 * 159.67437 * 16 14 13 19 19 H 1.48507 * 109.47336 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46995 * 300.00066 * 18 16 14 21 21 H 1.48495 * 109.47065 * 59.99885 * 18 16 14 22 22 C 1.35027 * 119.68237 * 180.23247 * 3 2 1 23 23 C 1.41574 * 119.11430 * 359.46944 * 22 3 2 24 24 O 1.21776 * 120.30843 * 180.31292 * 23 22 3 25 25 N 1.34841 * 119.38614 * 0.55134 * 23 22 3 26 26 C 1.46496 * 119.87014 * 179.74263 * 25 23 22 27 27 C 1.34540 * 119.68903 * 179.97438 * 2 1 3 28 28 O 1.21587 * 119.53556 * 0.02790 * 27 2 1 29 29 H 1.09006 * 109.46871 * 89.99926 * 1 2 3 30 30 H 1.08996 * 109.47305 * 209.99751 * 1 2 3 31 31 H 1.08994 * 109.47204 * 330.00225 * 1 2 3 32 32 H 1.08999 * 109.46912 * 60.00229 * 4 3 2 33 33 H 1.09000 * 109.47278 * 299.99741 * 4 3 2 34 34 H 1.07997 * 119.96143 * 0.02562 * 9 8 6 35 35 H 1.07997 * 119.65787 * 179.76083 * 10 9 8 36 36 H 1.07994 * 119.70851 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.05506 * 180.02562 * 12 11 10 38 38 H 0.97001 * 120.00153 * 355.30694 * 17 16 14 39 39 H 1.07996 * 120.44241 * 179.72695 * 22 3 2 40 40 H 1.09003 * 109.46738 * 269.97907 * 26 25 23 41 41 H 1.09004 * 109.47230 * 29.97363 * 26 25 23 42 42 H 1.08999 * 109.47600 * 149.97731 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1427 1.1887 0.0000 4 6 1.3857 2.4918 -0.0010 5 8 2.3264 3.5979 -0.0002 6 6 1.8078 4.8422 -0.0004 7 8 0.6026 4.9983 -0.0018 8 6 2.7019 6.0127 -0.0002 9 6 4.0803 5.8437 0.1083 10 6 4.9150 6.9452 0.1139 11 6 4.3955 8.2283 0.0065 12 6 3.0387 8.4271 -0.1070 13 6 2.1666 7.3228 -0.1153 14 6 0.7760 7.5155 -0.2304 15 1 0.1740 6.7971 -0.7670 16 6 0.1730 8.6405 0.3518 17 7 0.7829 9.2860 1.3097 18 14 -1.5018 9.2154 -0.2429 19 1 -1.9154 10.4158 0.5275 20 1 -1.4244 9.5565 -1.6861 21 1 -2.4968 8.1314 -0.0431 22 6 3.4930 1.1885 -0.0048 23 6 4.1817 -0.0484 0.0018 24 8 5.3992 -0.0739 0.0034 25 7 3.4770 -1.1980 0.0013 26 6 4.1788 -2.4839 0.0023 27 6 2.1313 -1.1688 0.0005 28 8 1.5092 -2.2134 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 0.7584 2.5482 0.8885 33 1 0.7596 2.5475 -0.8915 34 1 4.4970 4.8509 0.1924 35 1 5.9824 6.8064 0.2023 36 1 5.0622 9.0778 0.0121 37 1 2.6439 9.4288 -0.1904 38 1 1.6201 8.9489 1.6652 39 1 4.0402 2.1195 -0.0093 40 1 4.3536 -2.8032 -1.0251 41 1 5.1338 -2.3763 0.5167 42 1 3.5714 -3.2291 0.5160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808793473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:57 Heat of formation + Delta-G solvation = -95.438342 kcal Electronic energy + Delta-G solvation = -29499.288412 eV Core-core repulsion = 25217.374315 eV Total energy + Delta-G solvation = -4281.914097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58684 -39.81706 -39.21555 -38.09489 -37.41862 -35.61725 -35.43202 -34.09884 -32.30447 -30.56540 -29.78701 -29.45583 -27.27102 -26.70279 -25.48903 -23.71006 -23.20663 -22.19148 -21.17522 -20.23676 -19.23200 -18.24465 -17.96426 -17.50667 -17.08577 -16.76200 -16.08643 -16.04222 -15.70881 -15.08457 -15.05030 -14.81078 -14.30332 -14.14579 -13.94016 -13.89591 -13.75730 -13.19821 -13.16609 -12.96127 -12.76564 -12.56165 -12.48099 -12.19392 -11.92568 -11.49293 -11.30795 -11.16450 -11.07881 -10.87712 -10.51282 -10.42191 -10.41362 -10.33613 -10.01405 -9.89909 -9.25994 -9.09139 -8.72351 -7.98443 -7.80000 -7.38910 -4.70754 0.72783 1.57539 1.74123 1.93257 2.53863 2.61767 3.08248 3.16822 3.18943 3.23711 3.28266 3.58205 3.88271 3.94976 4.32623 4.42362 4.71942 4.83215 4.87936 5.02298 5.06015 5.09030 5.16851 5.24888 5.26616 5.31288 5.40584 5.51154 5.78598 5.83551 5.92185 6.06221 6.28999 6.33199 6.60830 6.78533 6.90113 6.95833 7.14592 7.25159 7.35079 7.42342 7.60409 7.67934 7.68757 7.91950 8.00436 8.47400 8.59845 8.74688 9.82454 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.002860 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.231598 B = 9789.544445 C =11444.121500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.530 5.530 3 C 0.190 3.810 4 C 0.105 3.895 5 O -0.359 6.359 6 C 0.508 3.492 7 O -0.511 6.511 8 C -0.256 4.256 9 C -0.022 4.022 10 C -0.257 4.257 11 C -0.069 4.069 12 C -0.199 4.199 13 C 0.122 3.878 14 C -0.463 4.463 15 H 0.105 0.895 16 C 0.032 3.968 17 N -0.781 5.781 18 Si 1.070 2.930 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.269 4.269 23 C 0.548 3.452 24 O -0.512 6.512 25 N -0.559 5.559 26 C 0.080 3.920 27 C 0.698 3.302 28 O -0.542 6.542 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.301 0.699 39 H 0.183 0.817 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 -13.907 -1.678 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.252 5.252 3 C 0.086 3.914 4 C 0.029 3.971 5 O -0.278 6.278 6 C 0.359 3.641 7 O -0.401 6.401 8 C -0.259 4.259 9 C -0.040 4.040 10 C -0.277 4.277 11 C -0.088 4.088 12 C -0.218 4.218 13 C 0.118 3.882 14 C -0.489 4.489 15 H 0.123 0.877 16 C -0.191 4.191 17 N -0.403 5.403 18 Si 0.893 3.107 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.197 1.197 22 C -0.295 4.295 23 C 0.345 3.655 24 O -0.387 6.387 25 N -0.304 5.304 26 C -0.061 4.061 27 C 0.402 3.598 28 O -0.416 6.416 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.201 0.799 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.769 -13.368 -1.419 13.559 hybrid contribution 1.204 -1.223 -0.160 1.723 sum -0.565 -14.591 -1.578 14.687 Atomic orbital electron populations 1.22208 0.74638 1.05674 1.04565 1.44441 1.09482 1.03458 1.67810 1.20415 0.92799 0.86715 0.91473 1.21377 0.90248 0.81066 1.04375 1.86585 1.39309 1.15180 1.86742 1.21390 0.88006 0.80974 0.73730 1.90763 1.16149 1.85086 1.48105 1.18563 0.91583 0.89827 1.25917 1.20920 0.92427 0.97509 0.93174 1.20367 0.97849 0.92611 1.16827 1.20836 0.94993 0.96029 0.96900 1.21216 0.92634 0.98205 1.09772 1.17442 0.93721 0.89187 0.87882 1.21207 0.93357 1.07246 1.27119 0.87747 1.27334 1.06112 0.92148 0.93543 1.70395 1.16552 1.36852 1.16520 0.83552 0.72863 0.77254 0.77065 1.19718 1.19764 1.19676 1.21884 0.92358 0.99260 1.15984 1.17402 0.88061 0.83592 0.76477 1.90877 1.12697 1.87031 1.48111 1.46424 1.05907 1.10947 1.67107 1.21889 0.98110 0.82208 1.03872 1.15716 0.81740 0.83722 0.78651 1.91001 1.66144 1.29586 1.54866 0.90103 0.88312 0.88846 0.88416 0.88370 0.87623 0.88388 0.88515 0.87252 0.88553 0.79950 0.90887 0.88838 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.95 59.84 0.60 1.11 16 2 N -0.53 -5.63 3.01 -124.34 -0.37 -6.00 16 3 C 0.19 2.22 6.68 -81.50 -0.54 1.68 16 4 C 0.10 1.31 4.53 36.00 0.16 1.47 16 5 O -0.36 -6.02 7.95 -40.78 -0.32 -6.34 16 6 C 0.51 10.69 7.85 34.41 0.27 10.96 16 7 O -0.51 -11.65 13.38 -19.28 -0.26 -11.91 16 8 C -0.26 -5.84 5.92 -104.39 -0.62 -6.46 16 9 C -0.02 -0.45 9.60 -39.20 -0.38 -0.83 16 10 C -0.26 -5.15 10.03 -39.37 -0.39 -5.54 16 11 C -0.07 -1.42 10.01 -39.59 -0.40 -1.82 16 12 C -0.20 -4.62 7.90 -38.88 -0.31 -4.93 16 13 C 0.12 3.00 5.16 -106.53 -0.55 2.45 16 14 C -0.46 -11.65 7.62 -37.82 -0.29 -11.94 16 15 H 0.10 2.69 5.99 -52.49 -0.31 2.38 16 16 C 0.03 0.76 5.01 -17.29 -0.09 0.68 16 17 N -0.78 -19.45 12.60 55.57 0.70 -18.75 16 18 Si 1.07 20.57 29.98 -169.99 -5.10 15.47 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.27 -3.55 9.34 -39.45 -0.37 -3.92 16 23 C 0.55 7.69 7.44 -14.96 -0.11 7.58 16 24 O -0.51 -8.47 16.70 5.12 0.09 -8.38 16 25 N -0.56 -6.90 2.96 -131.49 -0.39 -7.29 16 26 C 0.08 0.77 10.13 59.84 0.61 1.38 16 27 C 0.70 8.59 8.12 -87.29 -0.71 7.88 16 28 O -0.54 -7.40 15.35 5.29 0.08 -7.31 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.71 7.37 -51.93 -0.38 0.33 16 31 H 0.09 0.55 6.48 -51.93 -0.34 0.22 16 32 H 0.10 1.12 7.42 -51.93 -0.39 0.73 16 33 H 0.10 1.12 8.12 -51.93 -0.42 0.70 16 34 H 0.11 1.91 7.61 -52.49 -0.40 1.51 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.11 2.57 6.99 -52.49 -0.37 2.20 16 38 H 0.30 7.66 6.62 -40.82 -0.27 7.39 16 39 H 0.18 2.54 6.96 -52.49 -0.37 2.17 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.86 7.42 -51.93 -0.39 0.48 16 42 H 0.09 0.78 7.39 -51.93 -0.38 0.40 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -30.23 359.32 -7.77 -38.01 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.50 Total: 7.35 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.11 Total: -0.25 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: -0.06 Total: -32.04 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.42 Total: -33.95 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.10 Total: 15.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.23 -7.77 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808793473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.431 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds