Wall clock time and date at job start Wed Apr 1 2020 03:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34812 * 117.00039 * 2 1 4 4 O 1.21533 * 119.99924 * 0.02562 * 3 2 1 5 5 C 1.47141 * 119.99970 * 179.97438 * 3 2 1 6 6 C 1.38003 * 125.91166 * 179.97438 * 5 3 2 7 7 C 1.39424 * 107.44602 * 179.78001 * 6 5 3 8 8 C 1.37933 * 107.47624 * 0.42250 * 7 6 5 9 9 C 1.47330 * 125.88920 * 179.84465 * 8 7 6 10 10 O 1.21603 * 119.99893 * 359.68384 * 9 8 7 11 11 N 1.34776 * 119.99819 * 179.68866 * 9 8 7 12 12 C 1.46507 * 119.99610 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46761 * 180.02562 * 12 11 9 14 14 C 1.38302 * 119.93031 * 90.00159 * 13 12 11 15 15 C 1.38101 * 120.06877 * 180.02562 * 14 13 12 16 16 C 1.38876 * 119.92956 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06861 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53840 * 17 16 15 19 19 H 1.08003 * 120.00029 * 354.94359 * 18 17 16 20 20 C 1.38659 * 120.00122 * 174.94542 * 18 17 16 21 21 N 1.31558 * 119.99705 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47181 * 89.99980 * 22 20 18 24 24 H 1.48498 * 109.47260 * 210.00361 * 22 20 18 25 25 H 1.48502 * 109.47130 * 330.00179 * 22 20 18 26 26 C 1.38880 * 119.86555 * 0.27954 * 16 15 14 27 27 C 1.38105 * 119.92781 * 359.48865 * 26 16 15 28 28 N 1.36713 * 108.22362 * 359.57726 * 8 7 6 29 29 H 0.96993 * 125.66397 * 180.30515 * 28 8 7 30 30 H 1.09001 * 109.46764 * 299.99759 * 1 2 3 31 31 H 1.09001 * 109.47141 * 59.99600 * 1 2 3 32 32 H 1.08999 * 109.46927 * 180.02562 * 1 2 3 33 33 H 1.08002 * 126.27467 * 0.02562 * 6 5 3 34 34 H 1.08004 * 126.26243 * 180.25839 * 7 6 5 35 35 H 0.96995 * 120.00345 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.46952 * 60.00577 * 12 11 9 37 37 H 1.08995 * 109.47404 * 299.99896 * 12 11 9 38 38 H 1.07999 * 119.96521 * 0.02562 * 14 13 12 39 39 H 1.07997 * 120.03156 * 179.97438 * 15 14 13 40 40 H 0.96997 * 119.99350 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.04097 * 179.72435 * 26 16 15 42 42 H 1.07996 * 119.96589 * 180.23432 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4022 2.2204 0.0005 5 6 3.5335 1.2782 0.0006 6 6 4.2833 2.4367 0.0001 7 6 5.6271 2.0649 0.0060 8 6 5.6755 0.6864 0.0003 9 6 6.8987 -0.1348 0.0003 10 8 7.9905 0.4006 0.0000 11 7 6.8075 -1.4795 0.0007 12 6 8.0239 -2.2961 0.0001 13 6 7.6489 -3.7558 0.0000 14 6 7.4768 -4.4239 -1.1986 15 6 7.1326 -5.7614 -1.2021 16 6 6.9599 -6.4355 -0.0002 17 8 6.6221 -7.7503 -0.0003 18 6 6.5817 -8.3718 -1.1961 19 1 6.7320 -7.8064 -2.1040 20 6 6.3471 -9.7369 -1.2604 21 7 6.3082 -10.3434 -2.4272 22 14 6.0878 -10.7150 0.3097 23 1 4.6420 -10.7339 0.6481 24 1 6.5680 -12.1061 0.1114 25 1 6.8472 -10.0825 1.4181 26 6 7.1282 -5.7605 1.2017 27 6 7.4770 -4.4242 1.1985 28 7 4.3928 0.2136 0.0006 29 1 4.1347 -0.7214 0.0014 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.8996 3.4462 -0.0003 34 1 6.4750 2.7339 0.0112 35 1 5.9366 -1.9066 0.0005 36 1 8.6124 -2.0719 0.8898 37 1 8.6114 -2.0723 -0.8902 38 1 7.6117 -3.8992 -2.1329 39 1 6.9980 -6.2824 -2.1384 40 1 6.1445 -11.2984 -2.4721 41 1 6.9901 -6.2808 2.1380 42 1 7.6118 -3.8996 2.1329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815325233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:21 Heat of formation + Delta-G solvation = -96.262161 kcal Electronic energy + Delta-G solvation = -27848.357374 eV Core-core repulsion = 23566.407553 eV Total energy + Delta-G solvation = -4281.949820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.70662 -41.24972 -40.96508 -40.13538 -38.59677 -37.62939 -35.85436 -34.46659 -32.51477 -31.99815 -31.83708 -30.90536 -28.70701 -27.79683 -26.41208 -24.84881 -23.73330 -22.87578 -22.14627 -21.60034 -21.12191 -20.33907 -19.84176 -19.15163 -18.65480 -17.85831 -17.58849 -17.07731 -16.83330 -16.47489 -16.20551 -15.83697 -15.69546 -15.50459 -15.18456 -15.16885 -14.98320 -14.70568 -14.44877 -14.29979 -14.12684 -14.06447 -13.86335 -13.84979 -13.37726 -13.13362 -13.11378 -12.61796 -12.49044 -12.34592 -12.01390 -11.95095 -11.91738 -11.41354 -11.31460 -10.92282 -10.29225 -10.25564 -9.85217 -9.57201 -9.12241 -8.52042 -6.25183 -0.30054 0.45440 0.53319 0.88924 1.32153 1.35247 1.39647 1.51240 1.80153 1.90565 2.08071 2.19591 2.26352 2.76753 3.00330 3.15988 3.62364 3.68919 3.82214 4.00094 4.07669 4.12667 4.13555 4.25065 4.31068 4.42394 4.52765 4.67866 4.70383 4.72281 4.80153 4.94514 5.01024 5.11976 5.20749 5.20958 5.31186 5.33605 5.52412 5.60636 5.68733 5.77534 5.87010 6.02593 6.17583 6.39631 6.49828 6.82182 6.98427 7.55018 8.59177 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.002228 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.936788 B =12562.776686 C =14383.838227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.538 3.462 4 O -0.518 6.518 5 C -0.015 4.015 6 C -0.109 4.109 7 C -0.128 4.128 8 C -0.002 4.002 9 C 0.588 3.412 10 O -0.555 6.555 11 N -0.710 5.710 12 C 0.182 3.818 13 C -0.176 4.176 14 C -0.049 4.049 15 C -0.239 4.239 16 C 0.130 3.870 17 O -0.242 6.242 18 C -0.399 4.399 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.261 1.261 26 C -0.192 4.192 27 C -0.043 4.043 28 N -0.497 5.497 29 H 0.435 0.565 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.407 0.593 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.285 0.715 41 H 0.130 0.870 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 22.325 7.429 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.383 3.617 4 O -0.407 6.407 5 C -0.130 4.130 6 C -0.134 4.134 7 C -0.154 4.154 8 C -0.122 4.122 9 C 0.375 3.625 10 O -0.433 6.433 11 N -0.361 5.361 12 C 0.060 3.940 13 C -0.178 4.178 14 C -0.067 4.067 15 C -0.258 4.258 16 C 0.080 3.920 17 O -0.149 6.149 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.195 1.195 25 H -0.185 1.185 26 C -0.212 4.212 27 C -0.062 4.062 28 N -0.096 5.096 29 H 0.276 0.724 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.190 0.810 34 H 0.187 0.813 35 H 0.243 0.757 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.153 0.847 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.148 0.852 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.289 22.422 7.487 24.461 hybrid contribution -0.919 -1.562 -0.260 1.831 sum -7.208 20.860 7.227 23.223 Atomic orbital electron populations 1.23627 0.73511 1.05970 1.03099 1.86551 1.25960 1.31585 1.83979 1.20019 0.87039 0.82008 0.72636 1.90888 1.65805 1.36685 1.47288 1.19493 0.86563 0.88859 1.18096 1.21541 0.91677 0.97830 1.02392 1.21499 0.97644 0.92210 1.04073 1.20646 0.83204 0.94837 1.13493 1.17246 0.87029 0.81834 0.76427 1.90838 1.27938 1.72890 1.51606 1.46060 1.10987 1.05013 1.74078 1.20028 0.85885 0.84625 1.03473 1.19519 1.09906 0.95448 0.92884 1.20939 0.94947 0.92260 0.98584 1.21270 1.10345 0.96655 0.97533 1.19763 0.93141 0.83756 0.95317 1.83522 1.78553 1.20272 1.32516 1.20709 1.50879 0.92884 0.83075 0.89914 1.25287 0.95709 0.96547 1.01264 1.69728 1.48963 1.11915 1.25605 0.85223 0.79404 0.77460 0.78708 1.18996 1.19534 1.18509 1.20523 1.09463 0.95879 0.95285 1.20972 0.94710 0.91974 0.98522 1.41926 1.04488 1.09563 1.53621 0.72373 0.91277 0.91403 0.85159 0.81026 0.81318 0.75714 0.89640 0.90558 0.84722 0.87353 0.90543 0.85185 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.52 16 2 O -0.36 -5.67 10.58 -57.24 -0.61 -6.28 16 3 C 0.54 9.98 7.95 70.16 0.56 10.54 16 4 O -0.52 -11.93 16.67 19.73 0.33 -11.61 16 5 C -0.01 -0.25 7.07 40.65 0.29 0.04 16 6 C -0.11 -1.72 10.61 22.50 0.24 -1.48 16 7 C -0.13 -2.13 10.60 22.48 0.24 -1.89 16 8 C 0.00 -0.04 7.04 40.70 0.29 0.24 16 9 C 0.59 11.98 7.81 86.64 0.68 12.65 16 10 O -0.55 -15.06 16.87 -4.04 -0.07 -15.13 16 11 N -0.71 -12.22 5.55 -470.19 -2.61 -14.83 16 12 C 0.18 3.56 5.80 85.63 0.50 4.05 16 13 C -0.18 -4.25 5.25 -19.83 -0.10 -4.35 16 14 C -0.05 -1.43 9.69 22.25 0.22 -1.21 16 15 C -0.24 -9.38 9.17 22.39 0.21 -9.17 16 16 C 0.13 5.49 6.65 22.58 0.15 5.64 16 17 O -0.24 -12.28 8.59 -22.72 -0.20 -12.48 16 18 C -0.40 -22.40 9.95 67.92 0.68 -21.72 16 19 H 0.08 4.86 5.44 -2.91 -0.02 4.85 16 20 C 0.01 0.60 5.49 84.83 0.47 1.06 16 21 N -0.92 -53.43 13.96 21.61 0.30 -53.13 16 22 Si 0.97 43.53 28.62 68.60 1.96 45.50 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 26 C -0.19 -6.36 9.99 22.39 0.22 -6.13 16 27 C -0.04 -1.08 9.69 22.25 0.22 -0.86 16 28 N -0.50 -7.08 6.01 -172.60 -1.04 -8.12 16 29 H 0.44 4.41 8.15 -92.71 -0.76 3.66 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.41 5.56 7.56 -92.71 -0.70 4.86 16 36 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 37 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 38 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.11 4.81 5.64 -2.91 -0.02 4.80 16 40 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 42 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -70.94 377.45 3.76 -67.18 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.35 Total: 19.97 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 6.03 Total: -11.08 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -3.34 Total: -76.07 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.54 Total: -45.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.96 Total: 45.50 kcal Total: -70.94 3.76 -67.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815325233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.081 kcal (2) G-P(sol) polarization free energy of solvation -70.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds