Wall clock time and date at job start Wed Apr 1 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35989 * 116.99763 * 2 1 4 4 C 1.38808 * 120.76154 * 359.97438 * 3 2 1 5 5 N 1.32280 * 119.24065 * 179.72823 * 4 3 2 6 6 C 1.32870 * 120.90032 * 0.27932 * 5 4 3 7 7 C 1.47160 * 119.17459 * 180.02562 * 6 5 4 8 8 C 1.34483 * 119.99747 * 352.98599 * 7 6 5 9 9 C 1.47195 * 120.00065 * 347.08546 * 8 7 6 10 10 C 1.39911 * 120.07078 * 315.66193 * 9 8 7 11 11 C 1.37724 * 120.01011 * 180.02562 * 10 9 8 12 12 C 1.38997 * 120.15011 * 359.97380 * 11 10 9 13 13 O 1.35678 * 119.92682 * 180.02562 * 12 11 10 14 14 C 1.34777 * 117.00291 * 354.38650 * 13 12 11 15 15 H 1.08005 * 119.99454 * 5.07455 * 14 13 12 16 16 C 1.38639 * 120.00512 * 185.07762 * 14 13 12 17 17 N 1.31568 * 119.99388 * 359.97438 * 16 14 13 18 18 Si 1.86788 * 120.00215 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47551 * 90.00062 * 18 16 14 20 20 H 1.48512 * 109.46950 * 209.99840 * 18 16 14 21 21 H 1.48501 * 109.47263 * 329.99600 * 18 16 14 22 22 C 1.39561 * 120.14505 * 0.02562 * 12 11 10 23 23 O 1.35947 * 120.00812 * 179.97438 * 22 12 11 24 24 C 1.42898 * 117.00285 * 180.02562 * 23 22 12 25 25 C 1.38159 * 119.98907 * 359.74376 * 22 12 11 26 26 N 1.32970 * 121.65319 * 0.02562 * 6 5 4 27 27 C 1.32486 * 120.67175 * 359.97438 * 26 6 5 28 28 O 1.35610 * 120.47655 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47676 * 300.00464 * 1 2 3 31 31 H 1.09000 * 109.46873 * 60.00892 * 1 2 3 32 32 H 1.07999 * 120.38191 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.00438 * 172.98345 * 7 6 5 34 34 H 1.08003 * 119.99509 * 167.08409 * 8 7 6 35 35 H 1.07996 * 119.99341 * 0.02562 * 10 9 8 36 36 H 1.08002 * 119.92661 * 180.02562 * 11 10 9 37 37 H 0.97003 * 119.99828 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47428 * 300.00202 * 24 23 22 39 39 H 1.09000 * 109.47123 * 59.99969 * 24 23 22 40 40 H 1.08998 * 109.47176 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.07875 * 180.27450 * 25 22 12 42 42 H 0.96697 * 113.99970 * 90.00119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.3058 2.3858 -0.0005 5 7 1.9374 3.5480 0.0050 6 6 3.2649 3.6033 0.0054 7 6 3.9283 4.9169 0.0122 8 6 3.1995 6.0388 -0.1244 9 6 1.7963 5.9564 -0.5615 10 6 1.4409 5.1175 -1.6233 11 6 0.1278 5.0417 -2.0315 12 6 -0.8473 5.7969 -1.3905 13 8 -2.1397 5.7184 -1.7960 14 6 -2.3921 4.9818 -2.8962 15 1 -1.5969 4.4208 -3.3645 16 6 -3.6725 4.9443 -3.4266 17 7 -4.6412 5.6274 -2.8557 18 14 -4.0221 3.9241 -4.9517 19 1 -4.4169 2.5505 -4.5487 20 1 -5.1257 4.5500 -5.7236 21 1 -2.8017 3.8609 -5.7955 22 6 -0.4999 6.6358 -0.3306 23 8 -1.4557 7.3736 0.2940 24 6 -1.0288 8.2109 1.3705 25 6 0.8149 6.7127 0.0868 26 7 4.0092 2.5014 -0.0002 27 6 3.4432 1.3035 -0.0058 28 8 4.2060 0.1824 -0.0120 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2264 2.3507 -0.0005 33 1 5.0003 4.9800 0.1268 34 1 3.6438 7.0003 0.0866 35 1 2.1964 4.5293 -2.1228 36 1 -0.1451 4.3934 -2.8510 37 1 -5.5371 5.6009 -3.2266 38 1 -0.5760 7.5981 2.1499 39 1 -0.2971 8.9303 1.0030 40 1 -1.8876 8.7432 1.7793 41 1 1.0846 7.3581 0.9097 42 1 4.4278 -0.1473 0.8696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821008657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:09 Heat of formation + Delta-G solvation = -13.574481 kcal Electronic energy + Delta-G solvation = -30073.517752 eV Core-core repulsion = 25795.153539 eV Total energy + Delta-G solvation = -4278.364213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33391 -39.56052 -38.62994 -37.74651 -37.48079 -36.35364 -33.60909 -33.03878 -32.21237 -30.24443 -29.39998 -28.46805 -27.51671 -26.46239 -25.40334 -24.20646 -23.75277 -21.91192 -21.50582 -19.89307 -18.64546 -18.35715 -17.99251 -17.95690 -17.35891 -16.49083 -15.97651 -15.68184 -15.27237 -15.09575 -14.98685 -14.62139 -14.34733 -14.08594 -14.00522 -13.66218 -13.50164 -13.40384 -13.27631 -12.75424 -12.47269 -12.26356 -11.85553 -11.72898 -11.70705 -11.57208 -11.36418 -11.13559 -11.04145 -10.89057 -10.66119 -10.55968 -10.35443 -10.18130 -9.64282 -9.43992 -9.07816 -8.77910 -8.14330 -7.76447 -6.62167 -6.46671 -4.00551 0.54050 0.94267 1.84561 2.31057 2.78978 2.90293 3.09852 3.12306 3.16019 3.35963 3.91561 3.93203 4.07638 4.09777 4.26229 4.59918 4.70482 4.98436 5.05680 5.06136 5.11997 5.16477 5.26964 5.40305 5.46523 5.53418 5.59492 5.61321 5.74760 5.78168 5.89524 6.16724 6.23229 6.32857 6.46699 6.59611 6.66000 6.72564 6.99674 7.09635 7.14287 7.23666 7.32955 7.41431 7.65483 7.94458 8.13721 8.24049 8.97647 9.70681 10.70262 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.004318 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.514612 B = 6483.110849 C = 8586.914002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.300 6.300 3 C -0.003 4.003 4 C 0.084 3.916 5 N -0.441 5.441 6 C 0.336 3.664 7 C -0.148 4.148 8 C -0.011 4.011 9 C -0.124 4.124 10 C -0.025 4.025 11 C -0.223 4.223 12 C 0.147 3.853 13 O -0.161 6.161 14 C -0.389 4.389 15 H 0.091 0.909 16 C 0.040 3.960 17 N -0.854 5.854 18 Si 0.938 3.062 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C 0.044 3.956 23 O -0.305 6.305 24 C 0.033 3.967 25 C -0.138 4.138 26 N -0.504 5.504 27 C 0.328 3.672 28 O -0.467 6.467 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.174 0.826 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.411 -5.184 8.356 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.211 6.211 3 C -0.054 4.054 4 C -0.083 4.083 5 N -0.155 5.155 6 C 0.074 3.926 7 C -0.168 4.168 8 C -0.032 4.032 9 C -0.125 4.125 10 C -0.044 4.044 11 C -0.242 4.242 12 C 0.093 3.907 13 O -0.064 6.064 14 C -0.465 4.465 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.488 5.488 18 Si 0.763 3.237 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.192 1.192 22 C 0.000 4.000 23 O -0.220 6.220 24 C -0.063 4.063 25 C -0.157 4.157 26 N -0.229 5.229 27 C 0.137 3.863 28 O -0.273 6.273 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.191 0.809 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 12.212 -4.468 7.768 15.148 hybrid contribution -0.491 -1.429 -0.187 1.523 sum 11.721 -5.897 7.581 15.154 Atomic orbital electron populations 1.23230 0.77569 1.04595 1.02287 1.86124 1.21835 1.24731 1.88457 1.21151 0.93385 0.87546 1.03361 1.23592 1.01708 0.86232 0.96810 1.69300 1.09526 1.26187 1.10464 1.21463 0.85548 0.91782 0.93771 1.21232 0.98741 0.87214 1.09639 1.22201 0.93101 0.96986 0.90955 1.17945 0.91710 1.02687 1.00194 1.20412 0.94732 0.94385 0.94879 1.20682 0.92349 1.06070 1.05132 1.18733 0.85972 0.93516 0.92519 1.84023 1.18878 1.62284 1.41185 1.21350 0.96066 1.25712 1.03398 0.89139 1.25284 0.94604 0.97623 0.98981 1.70070 1.01477 1.38155 1.39103 0.85757 0.78761 0.79124 0.80079 1.19916 1.20180 1.19179 1.17969 0.87710 0.97591 0.96772 1.86223 1.33435 1.55712 1.46595 1.22850 1.01018 0.93470 0.88982 1.20669 0.91113 1.02494 1.01428 1.68102 1.41452 0.97680 1.15656 1.18659 0.84022 0.86123 0.97449 1.84804 1.71143 1.37522 1.33783 0.87654 0.92189 0.91734 0.80892 0.84664 0.85675 0.88851 0.85431 0.91994 0.93744 0.93667 0.89299 0.86519 0.74292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.84 101.05 0.99 1.17 16 2 O -0.30 -3.81 10.35 -32.49 -0.34 -4.15 16 3 C 0.00 -0.04 6.75 -38.72 -0.26 -0.30 16 4 C 0.08 1.26 10.29 -17.15 -0.18 1.09 16 5 N -0.44 -7.22 5.21 -11.30 -0.06 -7.28 16 6 C 0.34 5.23 6.60 -156.90 -1.04 4.20 16 7 C -0.15 -1.99 9.96 -37.29 -0.37 -2.36 16 8 C -0.01 -0.14 9.78 -37.27 -0.36 -0.51 16 9 C -0.12 -2.10 4.30 -105.03 -0.45 -2.56 16 10 C -0.02 -0.46 6.43 -39.14 -0.25 -0.71 16 11 C -0.22 -4.74 9.14 -39.49 -0.36 -5.10 16 12 C 0.15 3.54 6.67 -38.81 -0.26 3.28 16 13 O -0.16 -4.58 9.53 -14.19 -0.14 -4.71 16 14 C -0.39 -10.65 9.48 30.88 0.29 -10.35 16 15 H 0.09 2.28 5.19 -52.48 -0.27 2.01 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.85 -24.79 13.67 55.48 0.76 -24.03 16 18 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C 0.04 0.95 6.70 -39.12 -0.26 0.69 16 23 O -0.31 -6.58 10.28 -34.19 -0.35 -6.93 16 24 C 0.03 0.48 9.81 101.05 0.99 1.48 16 25 C -0.14 -2.44 8.77 -39.01 -0.34 -2.78 16 26 N -0.50 -7.75 10.39 -11.29 -0.12 -7.87 16 27 C 0.33 4.72 7.85 -16.62 -0.13 4.59 16 28 O -0.47 -5.70 13.41 -31.31 -0.42 -6.12 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.53 7.71 -51.93 -0.40 0.13 16 31 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 32 H 0.17 2.44 6.44 -52.49 -0.34 2.10 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.09 1.68 7.17 -52.49 -0.38 1.30 16 36 H 0.13 2.74 5.62 -52.49 -0.29 2.45 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 39 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.12 1.73 6.28 -52.49 -0.33 1.40 16 42 H 0.40 2.75 9.06 45.56 0.41 3.16 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -34.60 362.77 -5.92 -40.52 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.62 Total: 7.18 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.09 Total: -7.19 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.58 Total: -39.18 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.24 Total: -21.91 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.60 -5.92 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821008657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.946 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds