Wall clock time and date at job start Wed Apr 1 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35989 * 116.99763 * 2 1 4 4 C 1.38808 * 120.76154 * 359.97438 * 3 2 1 5 5 N 1.32280 * 119.24065 * 179.72823 * 4 3 2 6 6 C 1.32870 * 120.90032 * 0.27932 * 5 4 3 7 7 C 1.47160 * 119.17459 * 180.02562 * 6 5 4 8 8 C 1.34483 * 119.99747 * 352.98599 * 7 6 5 9 9 C 1.47195 * 120.00065 * 347.08546 * 8 7 6 10 10 C 1.39911 * 120.07078 * 315.66193 * 9 8 7 11 11 C 1.37724 * 120.01011 * 180.02562 * 10 9 8 12 12 C 1.38997 * 120.15011 * 359.97380 * 11 10 9 13 13 O 1.35678 * 119.92682 * 180.02562 * 12 11 10 14 14 C 1.34777 * 117.00291 * 354.38650 * 13 12 11 15 15 H 1.08005 * 119.99454 * 5.07455 * 14 13 12 16 16 C 1.38639 * 120.00512 * 185.07762 * 14 13 12 17 17 N 1.31568 * 119.99388 * 359.97438 * 16 14 13 18 18 Si 1.86788 * 120.00215 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47551 * 90.00062 * 18 16 14 20 20 H 1.48512 * 109.46950 * 209.99840 * 18 16 14 21 21 H 1.48501 * 109.47263 * 329.99600 * 18 16 14 22 22 C 1.39561 * 120.14505 * 0.02562 * 12 11 10 23 23 O 1.35947 * 120.00812 * 179.97438 * 22 12 11 24 24 C 1.42898 * 117.00285 * 180.02562 * 23 22 12 25 25 C 1.38159 * 119.98907 * 359.74376 * 22 12 11 26 26 N 1.32970 * 121.65319 * 0.02562 * 6 5 4 27 27 C 1.32486 * 120.67175 * 359.97438 * 26 6 5 28 28 O 1.35610 * 120.47655 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47676 * 300.00464 * 1 2 3 31 31 H 1.09000 * 109.46873 * 60.00892 * 1 2 3 32 32 H 1.07999 * 120.38191 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.00438 * 172.98345 * 7 6 5 34 34 H 1.08003 * 119.99509 * 167.08409 * 8 7 6 35 35 H 1.07996 * 119.99341 * 0.02562 * 10 9 8 36 36 H 1.08002 * 119.92661 * 180.02562 * 11 10 9 37 37 H 0.97003 * 119.99828 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47428 * 300.00202 * 24 23 22 39 39 H 1.09000 * 109.47123 * 59.99969 * 24 23 22 40 40 H 1.08998 * 109.47176 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.07875 * 180.27450 * 25 22 12 42 42 H 0.96697 * 113.99970 * 90.00119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.3058 2.3858 -0.0005 5 7 1.9374 3.5480 0.0050 6 6 3.2649 3.6033 0.0054 7 6 3.9283 4.9169 0.0122 8 6 3.1995 6.0388 -0.1244 9 6 1.7963 5.9564 -0.5615 10 6 1.4409 5.1175 -1.6233 11 6 0.1278 5.0417 -2.0315 12 6 -0.8473 5.7969 -1.3905 13 8 -2.1397 5.7184 -1.7960 14 6 -2.3921 4.9818 -2.8962 15 1 -1.5969 4.4208 -3.3645 16 6 -3.6725 4.9443 -3.4266 17 7 -4.6412 5.6274 -2.8557 18 14 -4.0221 3.9241 -4.9517 19 1 -4.4169 2.5505 -4.5487 20 1 -5.1257 4.5500 -5.7236 21 1 -2.8017 3.8609 -5.7955 22 6 -0.4999 6.6358 -0.3306 23 8 -1.4557 7.3736 0.2940 24 6 -1.0288 8.2109 1.3705 25 6 0.8149 6.7127 0.0868 26 7 4.0092 2.5014 -0.0002 27 6 3.4432 1.3035 -0.0058 28 8 4.2060 0.1824 -0.0120 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2264 2.3507 -0.0005 33 1 5.0003 4.9800 0.1268 34 1 3.6438 7.0003 0.0866 35 1 2.1964 4.5293 -2.1228 36 1 -0.1451 4.3934 -2.8510 37 1 -5.5371 5.6009 -3.2266 38 1 -0.5760 7.5981 2.1499 39 1 -0.2971 8.9303 1.0030 40 1 -1.8876 8.7432 1.7793 41 1 1.0846 7.3581 0.9097 42 1 4.4278 -0.1473 0.8696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821008657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:08 Heat of formation + Delta-G solvation = -39.739921 kcal Electronic energy + Delta-G solvation = -30074.652370 eV Core-core repulsion = 25795.153539 eV Total energy + Delta-G solvation = -4279.498832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46266 -41.13046 -39.70556 -39.16180 -38.80463 -37.78768 -34.93315 -34.29254 -33.99742 -31.51472 -30.87188 -29.81300 -28.49533 -27.77476 -27.27984 -25.42370 -24.86763 -23.31229 -23.10863 -21.11975 -19.83165 -19.78776 -19.44864 -19.10583 -18.80895 -17.84229 -17.22201 -17.04480 -16.62016 -16.52424 -16.31006 -16.06875 -15.57228 -15.42738 -15.23867 -15.08693 -14.98872 -14.86176 -14.54205 -13.93144 -13.89016 -13.60279 -13.42986 -13.05891 -12.79409 -12.72830 -12.67367 -12.60710 -12.53032 -12.19707 -12.14972 -11.86412 -11.79091 -11.43468 -11.27905 -10.88668 -10.66296 -10.20945 -9.44299 -9.21121 -8.42066 -8.20015 -6.05149 -0.60170 -0.21387 0.50799 0.76732 1.34405 1.37957 1.50835 1.53244 1.90315 2.18562 2.35319 2.68450 2.76474 2.90946 2.98987 3.12836 3.24406 3.51763 3.63972 3.95238 4.06038 4.14998 4.24631 4.26495 4.28727 4.40167 4.40855 4.49626 4.61840 4.65603 4.69385 4.76917 4.85052 5.02654 5.11120 5.15912 5.25577 5.46371 5.57415 5.64994 5.66137 5.91030 6.00808 6.01859 6.12440 6.49916 6.75433 6.97412 7.02735 7.88469 8.81295 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.004318 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.514612 B = 6483.110849 C = 8586.914002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.304 6.304 3 C 0.003 3.997 4 C 0.073 3.927 5 N -0.465 5.465 6 C 0.317 3.683 7 C -0.128 4.128 8 C -0.019 4.019 9 C -0.089 4.089 10 C -0.031 4.031 11 C -0.215 4.215 12 C 0.098 3.902 13 O -0.221 6.221 14 C -0.407 4.407 15 H 0.098 0.902 16 C -0.022 4.022 17 N -0.918 5.918 18 Si 1.013 2.987 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.257 1.257 22 C 0.036 3.964 23 O -0.348 6.348 24 C 0.023 3.977 25 C -0.133 4.133 26 N -0.509 5.509 27 C 0.328 3.672 28 O -0.470 6.470 29 H 0.133 0.867 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.271 0.729 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.156 0.844 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.207 -5.710 9.443 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.215 6.215 3 C -0.049 4.049 4 C -0.094 4.094 5 N -0.180 5.180 6 C 0.055 3.945 7 C -0.148 4.148 8 C -0.041 4.041 9 C -0.090 4.090 10 C -0.050 4.050 11 C -0.234 4.234 12 C 0.047 3.953 13 O -0.128 6.128 14 C -0.483 4.483 15 H 0.115 0.885 16 C -0.219 4.219 17 N -0.556 5.556 18 Si 0.833 3.167 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.180 1.180 22 C -0.009 4.009 23 O -0.263 6.263 24 C -0.072 4.072 25 C -0.152 4.152 26 N -0.234 5.234 27 C 0.137 3.863 28 O -0.280 6.280 29 H 0.151 0.849 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.189 0.811 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.174 0.826 42 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 16.083 -5.011 8.906 19.055 hybrid contribution -1.205 -1.350 -0.226 1.824 sum 14.878 -6.361 8.681 18.362 Atomic orbital electron populations 1.23471 0.76063 1.06454 1.02234 1.86123 1.23302 1.23994 1.88070 1.21134 0.93533 0.87659 1.02540 1.23588 1.01819 0.86609 0.97362 1.69202 1.10274 1.27009 1.11506 1.21962 0.85443 0.92925 0.94168 1.21653 1.00139 0.85894 1.07096 1.22431 0.90590 0.99249 0.91813 1.18448 0.93836 0.99094 0.97611 1.20470 0.93488 0.95267 0.95775 1.20664 0.93254 1.05155 1.04366 1.19300 0.85493 0.95914 0.94582 1.83992 1.21251 1.64861 1.42668 1.21758 0.96714 1.25990 1.03871 0.88511 1.26492 0.94054 0.98986 1.02368 1.70224 1.02013 1.41579 1.41782 0.84668 0.78787 0.77567 0.75702 1.18595 1.19707 1.18036 1.18300 0.89133 0.97175 0.96267 1.86170 1.35067 1.56641 1.48448 1.23215 1.02659 0.93449 0.87834 1.21061 0.89391 1.02722 1.02018 1.68158 1.41471 0.97929 1.15823 1.18805 0.84314 0.86511 0.96642 1.84755 1.70659 1.36653 1.35910 0.84858 0.91465 0.92613 0.81144 0.81440 0.81045 0.88001 0.86791 0.92034 0.91845 0.91468 0.87719 0.82644 0.71551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.84 113.37 1.12 1.34 16 2 O -0.30 -7.29 10.35 -81.21 -0.84 -8.13 16 3 C 0.00 0.09 6.75 22.83 0.15 0.25 16 4 C 0.07 2.15 10.29 84.76 0.87 3.03 16 5 N -0.47 -14.56 5.21 -189.66 -0.99 -15.55 16 6 C 0.32 8.96 6.60 137.00 0.90 9.87 16 7 C -0.13 -2.84 9.96 23.76 0.24 -2.60 16 8 C -0.02 -0.42 9.78 23.77 0.23 -0.19 16 9 C -0.09 -2.77 4.30 -20.13 -0.09 -2.85 16 10 C -0.03 -1.11 6.43 22.55 0.14 -0.96 16 11 C -0.21 -9.50 9.14 22.33 0.20 -9.30 16 12 C 0.10 4.96 6.67 22.77 0.15 5.11 16 13 O -0.22 -13.59 9.53 -7.44 -0.07 -13.66 16 14 C -0.41 -23.90 9.48 67.92 0.64 -23.26 16 15 H 0.10 5.24 5.19 -2.91 -0.02 5.22 16 16 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 17 N -0.92 -57.12 13.67 21.61 0.30 -56.82 16 18 Si 1.01 43.26 29.55 68.60 2.03 45.29 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 C 0.04 1.58 6.70 22.57 0.15 1.73 16 23 O -0.35 -15.38 10.28 -78.98 -0.81 -16.20 16 24 C 0.02 0.64 9.81 113.37 1.11 1.76 16 25 C -0.13 -4.42 8.77 22.64 0.20 -4.22 16 26 N -0.51 -14.23 10.39 -302.41 -3.14 -17.37 16 27 C 0.33 8.74 7.85 85.02 0.67 9.41 16 28 O -0.47 -10.27 13.41 -76.99 -1.03 -11.30 16 29 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.16 7.71 -2.39 -0.02 1.14 16 31 H 0.06 1.15 7.71 -2.39 -0.02 1.13 16 32 H 0.17 4.98 6.44 -2.91 -0.02 4.96 16 33 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.10 3.53 7.17 -2.91 -0.02 3.51 16 36 H 0.11 5.22 5.62 -2.91 -0.02 5.20 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.06 1.52 7.65 -2.39 -0.02 1.50 16 39 H 0.07 1.57 7.67 -2.39 -0.02 1.55 16 40 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.16 3.91 6.28 -2.91 -0.02 3.89 16 42 H 0.42 4.61 9.06 -74.06 -0.67 3.93 16 Total: -1.00 -82.41 362.77 3.04 -79.38 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.43 Total: 26.04 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 7.17 Total: -11.67 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -3.83 Total: -89.74 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -2.76 Total: -49.29 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -82.41 3.04 -79.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821008657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.637 kcal (2) G-P(sol) polarization free energy of solvation -82.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds