Wall clock time and date at job start Wed Apr 1 2020 02:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47371 * 2 1 4 4 C 1.34638 * 117.00094 * 180.02562 * 3 2 1 5 5 O 1.21517 * 119.99540 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00296 * 180.02562 * 4 3 2 7 7 C 1.47602 * 122.42568 * 0.02562 * 6 4 3 8 8 S 1.84075 * 102.63847 * 204.78861 * 7 6 4 9 9 C 1.84217 * 93.90834 * 326.56565 * 8 7 6 10 10 C 1.45496 * 122.42881 * 180.02562 * 6 4 3 11 11 H 1.08995 * 108.75945 * 58.13673 * 10 6 4 12 12 C 1.50694 * 108.75472 * 299.90913 * 10 6 4 13 13 O 1.21281 * 120.00252 * 0.02562 * 12 10 6 14 14 N 1.34780 * 120.00010 * 180.02562 * 12 10 6 15 15 C 1.47423 * 125.65043 * 0.04053 * 14 12 10 16 16 C 1.54905 * 104.83421 * 204.09648 * 15 14 12 17 17 C 1.55149 * 101.58287 * 322.99096 * 16 15 14 18 18 O 1.42905 * 110.72065 * 277.13959 * 17 16 15 19 19 C 1.50704 * 110.87515 * 153.93820 * 17 16 15 20 20 H 1.08000 * 119.99599 * 243.94932 * 19 17 16 21 21 C 1.37871 * 119.99987 * 63.94749 * 19 17 16 22 22 N 1.31519 * 120.00127 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00016 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47450 * 59.99689 * 23 21 19 25 25 H 1.48497 * 109.47144 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47006 * 299.99869 * 23 21 19 27 27 C 1.47024 * 125.64936 * 180.02562 * 14 12 10 28 28 H 1.08997 * 109.47399 * 59.99686 * 1 2 3 29 29 H 1.08994 * 109.47626 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47135 * 300.00030 * 1 2 3 31 31 H 1.08998 * 109.46723 * 239.99930 * 2 1 3 32 32 H 1.08996 * 109.46892 * 120.00179 * 2 1 3 33 33 H 1.08992 * 110.78126 * 323.07637 * 7 6 4 34 34 H 1.08999 * 110.77472 * 86.50428 * 7 6 4 35 35 H 1.08996 * 111.05495 * 274.23978 * 9 8 7 36 36 H 1.09003 * 111.05098 * 150.26549 * 9 8 7 37 37 H 1.09011 * 110.36246 * 322.93632 * 15 14 12 38 38 H 1.08994 * 110.36600 * 85.14373 * 15 14 12 39 39 H 1.09001 * 111.00074 * 204.91420 * 16 15 14 40 40 H 1.09003 * 111.00563 * 81.06800 * 16 15 14 41 41 H 0.96696 * 114.00036 * 293.52167 * 18 17 16 42 42 H 0.97000 * 119.99715 * 179.97438 * 22 21 19 43 43 H 1.08995 * 109.88294 * 59.55037 * 27 14 12 44 44 H 1.09008 * 109.87688 * 298.38634 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5815 -0.0015 6 7 3.8641 2.7907 0.0000 7 6 3.0154 3.9983 0.0016 8 16 4.1173 5.2660 -0.7515 9 6 5.6503 4.5467 -0.0261 10 6 5.2971 3.0421 -0.0011 11 1 5.7358 2.5668 -0.8784 12 6 5.8984 2.4241 1.2347 13 8 5.1903 1.8371 2.0252 14 7 7.2232 2.5238 1.4617 15 6 8.1956 3.2065 0.5889 16 6 9.5556 2.5391 0.9121 17 6 9.4332 2.3072 2.4413 18 8 9.7744 3.4934 3.1615 19 6 10.2965 1.1525 2.8801 20 1 9.8413 0.2647 3.2937 21 6 11.6672 1.2295 2.7536 22 7 12.2214 2.3105 2.2495 23 14 12.7372 -0.2020 3.2969 24 1 12.3730 -1.4147 2.5211 25 1 14.1651 0.1287 3.0580 26 1 12.5243 -0.4578 4.7442 27 6 7.9380 1.9700 2.6210 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1260 3.8467 -0.6099 34 1 2.7431 4.2781 1.0193 35 1 5.8220 4.9257 0.9813 36 1 6.5122 4.7358 -0.6660 37 1 7.9374 3.0535 -0.4591 38 1 8.2295 4.2714 0.8188 39 1 10.3839 3.2098 0.6837 40 1 9.6628 1.5934 0.3808 41 1 10.7036 3.7487 3.0812 42 1 13.1858 2.3648 2.1609 43 1 7.8035 0.8890 2.6577 44 1 7.5635 2.4236 3.5387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823527529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:41 Heat of formation + Delta-G solvation = -138.107608 kcal Electronic energy + Delta-G solvation = -29325.965154 eV Core-core repulsion = 25177.644730 eV Total energy + Delta-G solvation = -4148.320424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92384 -39.61821 -37.84203 -36.67282 -35.92912 -34.48820 -32.31442 -32.21815 -31.31309 -29.58674 -28.30209 -27.65016 -25.45214 -24.63626 -23.25494 -22.24933 -21.12399 -19.80468 -19.15401 -18.30499 -17.75666 -17.40364 -17.14696 -16.43887 -16.32433 -15.45733 -15.30571 -14.98188 -14.97511 -14.40327 -14.17297 -14.03717 -13.79982 -13.51128 -13.49547 -13.06373 -12.95972 -12.58106 -12.46865 -12.19839 -12.08748 -12.01643 -11.79009 -11.57296 -11.41724 -11.39319 -11.13754 -10.90609 -10.66992 -10.62505 -10.55348 -10.51531 -10.16478 -9.69263 -9.44233 -8.98064 -8.70311 -8.28301 -8.20057 -8.10925 -6.33339 -4.40736 1.26741 1.61594 1.71085 2.76930 2.85977 3.20425 3.24934 3.25831 3.31169 3.62140 4.06353 4.24083 4.49202 4.72594 4.74257 4.75856 4.80769 4.94218 4.99548 5.10120 5.11676 5.22375 5.34199 5.42635 5.56062 5.66424 5.68596 5.73994 5.82720 5.91042 6.13759 6.16468 6.38340 6.63081 6.82956 6.89209 6.99563 7.25435 7.28980 7.69377 7.95160 7.96964 8.16398 8.48061 8.61806 9.26751 9.36778 10.74193 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.003112 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.384656 B = 8995.787189 C =10328.415121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 O -0.369 6.369 4 C 0.674 3.326 5 O -0.542 6.542 6 N -0.585 5.585 7 C 0.161 3.839 8 S -0.259 6.259 9 C -0.063 4.063 10 C 0.138 3.862 11 H 0.115 0.885 12 C 0.517 3.483 13 O -0.528 6.528 14 N -0.604 5.604 15 C 0.089 3.911 16 C -0.135 4.135 17 C 0.249 3.751 18 O -0.586 6.586 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.903 3.097 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.125 3.875 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.385 0.615 42 H 0.270 0.730 43 H 0.072 0.928 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.004 4.123 -8.507 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.427 3.573 5 O -0.428 6.428 6 N -0.328 5.328 7 C -0.072 4.072 8 S -0.032 6.032 9 C -0.211 4.211 10 C 0.030 3.970 11 H 0.133 0.867 12 C 0.301 3.699 13 O -0.405 6.405 14 N -0.337 5.337 15 C -0.033 4.033 16 C -0.174 4.174 17 C 0.209 3.791 18 O -0.396 6.396 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C 0.004 3.996 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.236 0.764 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.987 4.441 -8.718 20.476 hybrid contribution 1.550 -1.714 0.778 2.438 sum -16.437 2.727 -7.941 18.457 Atomic orbital electron populations 1.21820 0.92515 1.03066 1.03430 1.22976 0.94664 0.78530 1.03081 1.86174 1.21601 1.33469 1.87159 1.17343 0.81321 0.82617 0.76001 1.91054 1.59662 1.38494 1.53548 1.46602 1.04620 1.03503 1.78027 1.24246 0.95447 0.83476 1.04039 1.88338 1.05195 1.41280 1.68398 1.24664 0.98343 0.91850 1.06266 1.21013 0.80058 0.96129 0.99841 0.86706 1.20008 0.81488 0.81230 0.87190 1.90688 1.59803 1.42717 1.47277 1.48541 1.05486 1.54443 1.25259 1.22662 0.91011 0.96894 0.92778 1.23306 0.93250 1.00428 1.00398 1.19421 0.88065 0.84601 0.87043 1.86101 1.33555 1.45420 1.74538 1.21491 0.91497 1.01666 1.42763 0.91765 1.24979 0.97914 0.96385 0.93692 1.69624 1.11835 1.27521 1.44708 0.86459 0.78855 0.82167 0.79439 1.20018 1.21076 1.19978 1.22096 0.92463 0.98150 0.86904 0.91557 0.89967 0.91437 0.91138 0.90872 0.85963 0.88286 0.86983 0.84504 0.92172 0.91490 0.89306 0.91317 0.76361 0.92056 0.90926 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16 2 C 0.08 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -4.88 9.46 -40.32 -0.38 -5.26 16 4 C 0.67 10.91 7.49 54.05 0.40 11.32 16 5 O -0.54 -10.73 14.80 -25.90 -0.38 -11.11 16 6 N -0.58 -8.30 2.76 -174.94 -0.48 -8.78 16 7 C 0.16 1.72 7.44 60.45 0.45 2.17 16 8 S -0.26 -2.73 23.43 -107.50 -2.52 -5.25 16 9 C -0.06 -0.70 5.47 37.98 0.21 -0.49 16 10 C 0.14 1.97 2.27 -68.80 -0.16 1.82 16 11 H 0.12 1.58 7.90 -51.93 -0.41 1.17 16 12 C 0.52 9.69 6.52 -10.99 -0.07 9.62 16 13 O -0.53 -11.86 14.91 -13.87 -0.21 -12.07 16 14 N -0.60 -11.51 3.32 -170.52 -0.57 -12.08 16 15 C 0.09 1.47 5.16 -2.53 -0.01 1.46 16 16 C -0.14 -2.77 5.58 -24.59 -0.14 -2.91 16 17 C 0.25 5.83 0.85 -89.94 -0.08 5.75 16 18 O -0.59 -14.18 13.09 -35.23 -0.46 -14.64 16 19 C -0.54 -13.81 8.22 -34.44 -0.28 -14.10 16 20 H 0.06 1.68 7.55 -52.49 -0.40 1.28 16 21 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 22 N -0.90 -22.45 10.68 55.43 0.59 -21.86 16 23 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.13 2.79 6.22 -3.06 -0.02 2.77 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.12 1.07 7.86 -51.93 -0.41 0.67 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.31 7.85 -51.93 -0.41 0.90 16 36 H 0.14 1.23 7.13 -51.93 -0.37 0.86 16 37 H 0.06 0.81 7.11 -51.92 -0.37 0.44 16 38 H 0.07 1.01 7.81 -51.93 -0.41 0.61 16 39 H 0.09 1.88 7.66 -51.93 -0.40 1.48 16 40 H 0.07 1.47 8.05 -51.93 -0.42 1.06 16 41 H 0.39 9.39 7.17 45.56 0.33 9.72 16 42 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 43 H 0.07 1.70 7.65 -51.93 -0.40 1.30 16 44 H 0.06 1.41 8.07 -51.92 -0.42 1.00 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -31.37 369.23 -8.78 -40.15 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.74 Total: 10.69 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 0.82 Total: 19.59 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.46 Total: -42.72 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.43 Total: -43.09 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.52 Total: -5.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.37 -8.78 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.956 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds