Wall clock time and date at job start Wed Apr 1 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47371 * 2 1 4 4 C 1.34638 * 117.00094 * 180.02562 * 3 2 1 5 5 O 1.21517 * 119.99540 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00296 * 180.02562 * 4 3 2 7 7 C 1.47602 * 122.42568 * 0.02562 * 6 4 3 8 8 S 1.84075 * 102.63847 * 204.78861 * 7 6 4 9 9 C 1.84217 * 93.90834 * 326.56565 * 8 7 6 10 10 C 1.45496 * 122.42881 * 180.02562 * 6 4 3 11 11 H 1.08995 * 108.75945 * 58.13673 * 10 6 4 12 12 C 1.50694 * 108.75472 * 299.90913 * 10 6 4 13 13 O 1.21281 * 120.00252 * 0.02562 * 12 10 6 14 14 N 1.34780 * 120.00010 * 180.02562 * 12 10 6 15 15 C 1.47423 * 125.65043 * 0.04053 * 14 12 10 16 16 C 1.54905 * 104.83421 * 204.09648 * 15 14 12 17 17 C 1.55149 * 101.58287 * 322.99096 * 16 15 14 18 18 O 1.42905 * 110.72065 * 277.13959 * 17 16 15 19 19 C 1.50704 * 110.87515 * 153.93820 * 17 16 15 20 20 H 1.08000 * 119.99599 * 243.94932 * 19 17 16 21 21 C 1.37871 * 119.99987 * 63.94749 * 19 17 16 22 22 N 1.31519 * 120.00127 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00016 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47450 * 59.99689 * 23 21 19 25 25 H 1.48497 * 109.47144 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47006 * 299.99869 * 23 21 19 27 27 C 1.47024 * 125.64936 * 180.02562 * 14 12 10 28 28 H 1.08997 * 109.47399 * 59.99686 * 1 2 3 29 29 H 1.08994 * 109.47626 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47135 * 300.00030 * 1 2 3 31 31 H 1.08998 * 109.46723 * 239.99930 * 2 1 3 32 32 H 1.08996 * 109.46892 * 120.00179 * 2 1 3 33 33 H 1.08992 * 110.78126 * 323.07637 * 7 6 4 34 34 H 1.08999 * 110.77472 * 86.50428 * 7 6 4 35 35 H 1.08996 * 111.05495 * 274.23978 * 9 8 7 36 36 H 1.09003 * 111.05098 * 150.26549 * 9 8 7 37 37 H 1.09011 * 110.36246 * 322.93632 * 15 14 12 38 38 H 1.08994 * 110.36600 * 85.14373 * 15 14 12 39 39 H 1.09001 * 111.00074 * 204.91420 * 16 15 14 40 40 H 1.09003 * 111.00563 * 81.06800 * 16 15 14 41 41 H 0.96696 * 114.00036 * 293.52167 * 18 17 16 42 42 H 0.97000 * 119.99715 * 179.97438 * 22 21 19 43 43 H 1.08995 * 109.88294 * 59.55037 * 27 14 12 44 44 H 1.09008 * 109.87688 * 298.38634 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5815 -0.0015 6 7 3.8641 2.7907 0.0000 7 6 3.0154 3.9983 0.0016 8 16 4.1173 5.2660 -0.7515 9 6 5.6503 4.5467 -0.0261 10 6 5.2971 3.0421 -0.0011 11 1 5.7358 2.5668 -0.8784 12 6 5.8984 2.4241 1.2347 13 8 5.1903 1.8371 2.0252 14 7 7.2232 2.5238 1.4617 15 6 8.1956 3.2065 0.5889 16 6 9.5556 2.5391 0.9121 17 6 9.4332 2.3072 2.4413 18 8 9.7744 3.4934 3.1615 19 6 10.2965 1.1525 2.8801 20 1 9.8413 0.2647 3.2937 21 6 11.6672 1.2295 2.7536 22 7 12.2214 2.3105 2.2495 23 14 12.7372 -0.2020 3.2969 24 1 12.3730 -1.4147 2.5211 25 1 14.1651 0.1287 3.0580 26 1 12.5243 -0.4578 4.7442 27 6 7.9380 1.9700 2.6210 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1260 3.8467 -0.6099 34 1 2.7431 4.2781 1.0193 35 1 5.8220 4.9257 0.9813 36 1 6.5122 4.7358 -0.6660 37 1 7.9374 3.0535 -0.4591 38 1 8.2295 4.2714 0.8188 39 1 10.3839 3.2098 0.6837 40 1 9.6628 1.5934 0.3808 41 1 10.7036 3.7487 3.0812 42 1 13.1858 2.3648 2.1609 43 1 7.8035 0.8890 2.6577 44 1 7.5635 2.4236 3.5387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823527529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:40 Heat of formation + Delta-G solvation = -160.030556 kcal Electronic energy + Delta-G solvation = -29326.915804 eV Core-core repulsion = 25177.644730 eV Total energy + Delta-G solvation = -4149.271074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15782 -41.01354 -39.31968 -38.02008 -37.16245 -36.21403 -34.17865 -33.34083 -32.26623 -31.13919 -29.96053 -28.63212 -27.15476 -25.81424 -24.39454 -23.46954 -22.39904 -21.45291 -20.53368 -19.45901 -19.29882 -18.75631 -18.54374 -17.63887 -17.36907 -16.96084 -16.85321 -16.66096 -16.12050 -15.88054 -15.44820 -15.19582 -14.87399 -14.80781 -14.69778 -14.58700 -13.92561 -13.83222 -13.60154 -13.55491 -13.37990 -13.25998 -13.22619 -13.00013 -12.88902 -12.64393 -12.57642 -12.44886 -12.30411 -12.21829 -11.99694 -11.77068 -11.58771 -11.28178 -10.97725 -10.65445 -10.20065 -10.14246 -9.69418 -9.00121 -8.26881 -6.40622 0.41656 0.62717 0.76439 1.41007 1.42091 1.43223 1.49911 1.55696 1.93385 2.38147 2.58439 2.98325 3.01821 3.26022 3.68571 3.82389 3.96348 3.97019 3.98465 4.07031 4.15108 4.22668 4.26692 4.30920 4.34389 4.39481 4.54538 4.57565 4.64085 4.79333 4.89666 4.91095 5.06388 5.15666 5.19545 5.28216 5.46107 5.53929 5.75398 5.85692 6.04925 6.47319 6.61816 6.92573 7.04588 7.30042 7.42494 8.78824 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.003112 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.384656 B = 8995.787189 C =10328.415121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 O -0.362 6.362 4 C 0.669 3.331 5 O -0.587 6.587 6 N -0.586 5.586 7 C 0.155 3.845 8 S -0.234 6.234 9 C -0.061 4.061 10 C 0.144 3.856 11 H 0.126 0.874 12 C 0.512 3.488 13 O -0.573 6.573 14 N -0.604 5.604 15 C 0.096 3.904 16 C -0.128 4.128 17 C 0.239 3.761 18 O -0.591 6.591 19 C -0.567 4.567 20 H 0.046 0.954 21 C 0.041 3.959 22 N -0.902 5.902 23 Si 0.955 3.045 24 H -0.276 1.276 25 H -0.274 1.274 26 H -0.279 1.279 27 C 0.133 3.867 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.144 0.856 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.167 0.833 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.383 0.617 42 H 0.274 0.726 43 H 0.049 0.951 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.842 5.617 -10.367 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 O -0.276 6.276 4 C 0.422 3.578 5 O -0.477 6.477 6 N -0.328 5.328 7 C -0.077 4.077 8 S -0.007 6.007 9 C -0.209 4.209 10 C 0.036 3.964 11 H 0.144 0.856 12 C 0.298 3.702 13 O -0.452 6.452 14 N -0.337 5.337 15 C -0.025 4.025 16 C -0.166 4.166 17 C 0.199 3.801 18 O -0.400 6.400 19 C -0.605 4.605 20 H 0.064 0.936 21 C -0.161 4.161 22 N -0.541 5.541 23 Si 0.781 3.219 24 H -0.202 1.202 25 H -0.199 1.199 26 H -0.204 1.204 27 C 0.010 3.990 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.184 0.816 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.233 0.767 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.848 5.988 -10.606 22.441 hybrid contribution 1.762 -2.198 1.401 3.146 sum -17.086 3.790 -9.205 19.774 Atomic orbital electron populations 1.21830 0.89238 1.04676 1.04012 1.23285 0.97088 0.77439 1.02324 1.86205 1.19901 1.34853 1.86650 1.17658 0.81898 0.82795 0.75409 1.91016 1.60820 1.40163 1.55665 1.46770 1.05081 1.03930 1.77048 1.24490 0.95884 0.82232 1.05099 1.88323 1.04069 1.40401 1.67889 1.24720 0.99947 0.89199 1.07080 1.21090 0.80121 0.98075 0.97137 0.85649 1.20897 0.80848 0.80360 0.88082 1.90662 1.60765 1.44576 1.49224 1.48562 1.06141 1.54469 1.24565 1.22781 0.87858 0.97325 0.94504 1.23088 0.95658 1.00068 0.97834 1.19500 0.87992 0.83700 0.88883 1.86084 1.33266 1.45578 1.75095 1.21698 0.92628 1.02174 1.44038 0.93554 1.25516 0.98526 0.98396 0.93632 1.69662 1.12178 1.28044 1.44225 0.85659 0.77891 0.79751 0.78590 1.20177 1.19912 1.20449 1.21752 0.92573 0.96768 0.87935 0.90409 0.87816 0.91325 0.91030 0.92662 0.83866 0.87740 0.87327 0.81575 0.88029 0.89106 0.89708 0.92767 0.76671 0.91687 0.93300 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 10.29 71.98 0.74 -0.98 16 2 C 0.07 1.54 6.19 71.98 0.45 1.99 16 3 O -0.36 -9.36 9.46 -55.48 -0.52 -9.88 16 4 C 0.67 21.54 7.49 129.79 0.97 22.52 16 5 O -0.59 -23.81 14.80 26.11 0.39 -23.42 16 6 N -0.59 -15.87 2.76 -937.79 -2.59 -18.46 16 7 C 0.16 2.94 7.44 127.56 0.95 3.89 16 8 S -0.23 -4.15 23.43 -56.49 -1.32 -5.47 16 9 C -0.06 -1.16 5.47 72.51 0.40 -0.76 16 10 C 0.14 3.86 2.27 44.96 0.10 3.97 16 11 H 0.13 3.14 7.90 -2.39 -0.02 3.12 16 12 C 0.51 19.10 6.52 87.65 0.57 19.67 16 13 O -0.57 -26.47 14.91 15.54 0.23 -26.23 16 14 N -0.60 -22.89 3.32 -811.80 -2.69 -25.58 16 15 C 0.10 2.98 5.16 86.85 0.45 3.43 16 16 C -0.13 -5.18 5.58 31.98 0.18 -5.00 16 17 C 0.24 11.40 0.85 -10.35 -0.01 11.39 16 18 O -0.59 -28.82 13.09 -148.98 -1.95 -30.77 16 19 C -0.57 -30.07 8.22 25.60 0.21 -29.86 16 20 H 0.05 2.54 7.55 -2.91 -0.02 2.52 16 21 C 0.04 2.09 5.27 84.65 0.45 2.53 16 22 N -0.90 -44.81 10.68 21.45 0.23 -44.58 16 23 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 C 0.13 6.13 6.22 86.73 0.54 6.67 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.14 2.11 7.86 -2.39 -0.02 2.09 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 2.21 7.85 -2.39 -0.02 2.20 16 36 H 0.17 2.18 7.13 -2.39 -0.02 2.16 16 37 H 0.10 2.34 7.11 -2.38 -0.02 2.33 16 38 H 0.09 2.43 7.81 -2.39 -0.02 2.41 16 39 H 0.08 3.50 7.66 -2.39 -0.02 3.48 16 40 H 0.05 2.32 8.05 -2.39 -0.02 2.30 16 41 H 0.38 18.76 7.17 -74.06 -0.53 18.23 16 42 H 0.27 12.95 8.31 -92.71 -0.77 12.17 16 43 H 0.05 2.44 7.65 -2.39 -0.02 2.43 16 44 H 0.04 2.16 8.07 -2.38 -0.02 2.14 16 Total: -1.00 -70.53 369.23 0.28 -70.26 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.50 Total: 31.34 kcal Atomic # 6 Polarization: 33.46 SS G_CDS: 5.99 Total: 39.45 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -5.06 Total: -88.63 kcal Atomic # 8 Polarization: -88.45 SS G_CDS: -1.86 Total: -90.31 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -1.32 Total: -5.47 kcal Total: -70.53 0.28 -70.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.773 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds