Wall clock time and date at job start Wed Apr 1 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28438 * 125.21543 * 2 1 4 4 C 1.30927 * 111.01838 * 180.02562 * 3 2 1 5 5 C 1.39521 * 107.94505 * 359.73524 * 4 3 2 6 6 C 1.36835 * 125.21703 * 180.02562 * 2 1 3 7 7 C 1.46296 * 126.93309 * 359.95893 * 6 2 1 8 8 O 1.21343 * 120.00182 * 359.72279 * 7 6 2 9 9 C 1.50708 * 119.99634 * 180.02562 * 7 6 2 10 10 O 1.45197 * 109.46626 * 179.72316 * 9 7 6 11 11 C 1.34227 * 116.99882 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99884 * 0.02562 * 11 10 9 13 13 C 1.50708 * 120.00339 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47057 * 179.97438 * 13 11 10 15 15 C 1.38300 * 119.93341 * 269.72465 * 14 13 11 16 16 C 1.38093 * 120.06722 * 179.72635 * 15 14 13 17 17 C 1.38878 * 119.93106 * 0.57463 * 16 15 14 18 18 O 1.35756 * 120.06891 * 179.68227 * 17 16 15 19 19 C 1.34832 * 117.00089 * 174.48761 * 18 17 16 20 20 H 1.07997 * 119.99632 * 5.05395 * 19 18 17 21 21 C 1.38646 * 120.00107 * 185.05526 * 19 18 17 22 22 N 1.31559 * 120.00313 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00308 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47011 * 89.99782 * 23 21 19 25 25 H 1.48493 * 109.47679 * 210.00291 * 23 21 19 26 26 H 1.48504 * 109.46983 * 330.00376 * 23 21 19 27 27 C 1.38872 * 119.86400 * 359.70280 * 17 16 15 28 28 C 1.38101 * 119.93096 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.46904 * 269.95558 * 1 2 3 30 30 H 1.08997 * 109.47457 * 29.95433 * 1 2 3 31 31 H 1.09001 * 109.47017 * 149.95936 * 1 2 3 32 32 H 1.08000 * 126.02618 * 180.02562 * 4 3 2 33 33 H 1.08005 * 127.33006 * 180.30576 * 5 4 3 34 34 H 1.08995 * 109.46721 * 299.71974 * 9 7 6 35 35 H 1.08995 * 109.47262 * 59.72315 * 9 7 6 36 36 H 1.08995 * 109.46859 * 300.00600 * 13 11 10 37 37 H 1.09003 * 109.46624 * 59.99956 * 13 11 10 38 38 H 1.07998 * 119.96096 * 359.97438 * 15 14 13 39 39 H 1.08006 * 120.03188 * 180.27723 * 16 15 14 40 40 H 0.96998 * 120.00583 * 180.02562 * 22 21 19 41 41 H 1.07997 * 120.03893 * 179.97438 * 27 17 16 42 42 H 1.07996 * 119.97057 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2057 1.0493 0.0000 4 6 3.4749 0.7282 -0.0005 5 6 3.5661 -0.6640 0.0052 6 6 2.2541 -1.1179 -0.0005 7 6 1.8057 -2.5104 -0.0003 8 8 0.6195 -2.7659 0.0055 9 6 2.8171 -3.6277 -0.0003 10 8 2.1270 -4.9052 0.0065 11 6 2.8896 -6.0098 0.0068 12 8 4.0939 -5.9124 0.0020 13 6 2.2437 -7.3714 0.0144 14 6 3.3122 -8.4342 0.0125 15 6 3.7916 -8.9288 -1.1868 16 6 4.7746 -9.8986 -1.1918 17 6 5.2735 -10.3858 0.0093 18 8 6.2353 -11.3438 0.0077 19 6 6.7562 -11.6902 1.2021 20 1 6.3496 -11.2711 2.1105 21 6 7.8140 -12.5844 1.2640 22 7 8.3091 -13.0954 0.1574 23 14 8.5362 -13.0639 2.9186 24 1 7.8224 -14.2556 3.4437 25 1 9.9776 -13.3819 2.7563 26 1 8.3826 -11.9352 3.8715 27 6 4.7860 -9.8913 1.2119 28 6 3.8076 -8.9166 1.2103 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 4.3050 1.4192 -0.0003 33 1 4.4659 -1.2614 0.0110 34 1 3.4384 -3.5552 -0.8929 35 1 3.4452 -3.5493 0.8870 36 1 1.6278 -7.4764 0.9074 37 1 1.6198 -7.4824 -0.8725 38 1 3.3994 -8.5532 -2.1204 39 1 5.1517 -10.2812 -2.1287 40 1 9.0488 -13.7213 0.2007 41 1 5.1716 -10.2684 2.1475 42 1 3.4283 -8.5313 2.1452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848718104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:15 Heat of formation + Delta-G solvation = -34.452025 kcal Electronic energy + Delta-G solvation = -27693.061835 eV Core-core repulsion = 23413.792303 eV Total energy + Delta-G solvation = -4279.269531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.99405 -40.70772 -39.44795 -38.92991 -36.93061 -36.13516 -33.90400 -32.57010 -32.15118 -31.53774 -30.20482 -29.14284 -27.60707 -26.77865 -25.20773 -23.69856 -22.18603 -22.01884 -21.44819 -20.27623 -20.05413 -18.07070 -18.02440 -17.31491 -17.13571 -17.00814 -16.70032 -16.53291 -15.73405 -15.17288 -15.07148 -14.66116 -14.55664 -14.34637 -14.17634 -14.00817 -13.66852 -13.52666 -13.33481 -13.24357 -12.94985 -12.75332 -12.68245 -12.54942 -11.93214 -11.57715 -11.36468 -11.30774 -10.98350 -10.93756 -10.84415 -10.66187 -10.56560 -10.45064 -10.28530 -9.73209 -9.54306 -9.36092 -8.85361 -8.20280 -7.23403 -6.47225 -4.05884 0.38087 1.75379 1.99446 2.09280 2.20726 2.25336 2.35755 2.57270 3.11693 3.13058 3.17823 3.47950 3.95147 4.03057 4.33201 4.49469 4.60586 4.64449 4.70249 4.72248 4.78332 4.91538 4.99945 5.05756 5.12357 5.18824 5.21888 5.27467 5.28651 5.60621 5.68255 5.79902 5.96608 6.14598 6.17381 6.23529 6.37377 6.65923 6.79413 6.86785 7.01713 7.18987 7.31012 7.41179 7.51911 7.75879 7.79224 7.97712 8.98253 9.67470 10.70554 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.001709 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.001634 B =16377.532152 C =16977.938196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.257 5.257 3 N -0.271 5.271 4 C -0.005 4.005 5 C -0.166 4.166 6 C -0.074 4.074 7 C 0.430 3.570 8 O -0.433 6.433 9 C 0.033 3.967 10 O -0.347 6.347 11 C 0.456 3.544 12 O -0.487 6.487 13 C -0.048 4.048 14 C -0.186 4.186 15 C -0.056 4.056 16 C -0.192 4.192 17 C 0.160 3.840 18 O -0.175 6.175 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.233 4.233 28 C -0.052 4.052 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.190 0.810 33 H 0.169 0.831 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.128 0.872 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.807 23.728 0.102 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.046 5.046 3 N -0.106 5.106 4 C -0.180 4.180 5 C -0.195 4.195 6 C -0.200 4.200 7 C 0.305 3.695 8 O -0.305 6.305 9 C -0.042 4.042 10 O -0.264 6.264 11 C 0.299 3.701 12 O -0.372 6.372 13 C -0.085 4.085 14 C -0.187 4.187 15 C -0.074 4.074 16 C -0.211 4.211 17 C 0.105 3.895 18 O -0.078 6.078 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.253 4.253 28 C -0.071 4.071 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.207 0.793 33 H 0.186 0.814 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.661 24.236 -0.142 28.325 hybrid contribution 1.207 -0.648 0.906 1.642 sum -13.454 23.588 0.764 27.166 Atomic orbital electron populations 1.22416 0.72328 1.06096 1.05034 1.45838 1.08005 1.01879 1.48861 1.73244 1.04589 1.13758 1.18964 1.23660 0.93408 0.95163 1.05726 1.22532 0.95697 0.95688 1.05593 1.21826 0.92066 0.90034 1.16025 1.21137 0.89587 0.86441 0.72353 1.90585 1.18682 1.85916 1.35316 1.22943 0.94380 0.80979 1.05906 1.86588 1.41071 1.13787 1.84994 1.24406 0.86746 0.86433 0.72560 1.90725 1.15666 1.87018 1.43755 1.20107 0.97618 0.85180 1.05589 1.18622 1.03747 1.02267 0.94016 1.20426 0.95302 0.95427 0.96271 1.20162 1.02238 1.02399 0.96304 1.19405 0.88965 0.87803 0.93292 1.83978 1.44963 1.45736 1.33149 1.21343 1.15476 1.26837 0.83153 0.88985 1.25302 0.95746 0.96145 0.99321 1.70037 1.24232 1.28322 1.26978 0.85703 0.78414 0.79187 0.80080 1.19852 1.20227 1.19163 1.21110 1.02573 1.03104 0.98480 1.20538 0.95149 0.95231 0.96151 0.89398 0.88474 0.87300 0.79258 0.81396 0.87143 0.87147 0.87593 0.87556 0.87147 0.86379 0.91968 0.85436 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 10.82 59.85 0.65 1.13 16 2 N -0.26 -2.26 3.76 -63.98 -0.24 -2.50 16 3 N -0.27 -2.50 11.90 30.57 0.36 -2.14 16 4 C -0.01 -0.04 12.02 -17.46 -0.21 -0.25 16 5 C -0.17 -1.17 10.56 -38.88 -0.41 -1.58 16 6 C -0.07 -0.64 6.94 -82.17 -0.57 -1.21 16 7 C 0.43 4.01 7.19 -31.07 -0.22 3.79 16 8 O -0.43 -4.96 14.85 -14.15 -0.21 -5.17 16 9 C 0.03 0.31 5.44 36.01 0.20 0.50 16 10 O -0.35 -4.12 9.75 -45.89 -0.45 -4.57 16 11 C 0.46 6.16 7.95 36.01 0.29 6.45 16 12 O -0.49 -8.14 15.78 -18.75 -0.30 -8.43 16 13 C -0.05 -0.59 5.94 -29.03 -0.17 -0.76 16 14 C -0.19 -3.08 4.38 -104.57 -0.46 -3.54 16 15 C -0.06 -0.99 9.69 -39.61 -0.38 -1.37 16 16 C -0.19 -4.04 9.99 -39.40 -0.39 -4.44 16 17 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 18 O -0.18 -4.99 9.76 0.02 0.00 -4.99 16 19 C -0.39 -10.92 9.49 30.88 0.29 -10.62 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.14 13.67 55.48 0.76 -24.39 16 23 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 28 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.68 6.33 -51.93 -0.33 0.35 16 32 H 0.19 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.11 0.87 8.13 -51.93 -0.42 0.45 16 35 H 0.11 0.88 8.13 -51.93 -0.42 0.46 16 36 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -35.58 376.24 -6.60 -42.19 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.68 Total: 3.02 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.50 Total: -14.09 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.88 Total: -29.02 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.95 Total: -23.17 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.58 -6.60 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848718104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.733 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds