Wall clock time and date at job start Wed Apr 1 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28438 * 125.21543 * 2 1 4 4 C 1.30927 * 111.01838 * 180.02562 * 3 2 1 5 5 C 1.39521 * 107.94505 * 359.73524 * 4 3 2 6 6 C 1.36835 * 125.21703 * 180.02562 * 2 1 3 7 7 C 1.46296 * 126.93309 * 359.95893 * 6 2 1 8 8 O 1.21343 * 120.00182 * 359.72279 * 7 6 2 9 9 C 1.50708 * 119.99634 * 180.02562 * 7 6 2 10 10 O 1.45197 * 109.46626 * 179.72316 * 9 7 6 11 11 C 1.34227 * 116.99882 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99884 * 0.02562 * 11 10 9 13 13 C 1.50708 * 120.00339 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47057 * 179.97438 * 13 11 10 15 15 C 1.38300 * 119.93341 * 269.72465 * 14 13 11 16 16 C 1.38093 * 120.06722 * 179.72635 * 15 14 13 17 17 C 1.38878 * 119.93106 * 0.57463 * 16 15 14 18 18 O 1.35756 * 120.06891 * 179.68227 * 17 16 15 19 19 C 1.34832 * 117.00089 * 174.48761 * 18 17 16 20 20 H 1.07997 * 119.99632 * 5.05395 * 19 18 17 21 21 C 1.38646 * 120.00107 * 185.05526 * 19 18 17 22 22 N 1.31559 * 120.00313 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00308 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47011 * 89.99782 * 23 21 19 25 25 H 1.48493 * 109.47679 * 210.00291 * 23 21 19 26 26 H 1.48504 * 109.46983 * 330.00376 * 23 21 19 27 27 C 1.38872 * 119.86400 * 359.70280 * 17 16 15 28 28 C 1.38101 * 119.93096 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.46904 * 269.95558 * 1 2 3 30 30 H 1.08997 * 109.47457 * 29.95433 * 1 2 3 31 31 H 1.09001 * 109.47017 * 149.95936 * 1 2 3 32 32 H 1.08000 * 126.02618 * 180.02562 * 4 3 2 33 33 H 1.08005 * 127.33006 * 180.30576 * 5 4 3 34 34 H 1.08995 * 109.46721 * 299.71974 * 9 7 6 35 35 H 1.08995 * 109.47262 * 59.72315 * 9 7 6 36 36 H 1.08995 * 109.46859 * 300.00600 * 13 11 10 37 37 H 1.09003 * 109.46624 * 59.99956 * 13 11 10 38 38 H 1.07998 * 119.96096 * 359.97438 * 15 14 13 39 39 H 1.08006 * 120.03188 * 180.27723 * 16 15 14 40 40 H 0.96998 * 120.00583 * 180.02562 * 22 21 19 41 41 H 1.07997 * 120.03893 * 179.97438 * 27 17 16 42 42 H 1.07996 * 119.97057 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2057 1.0493 0.0000 4 6 3.4749 0.7282 -0.0005 5 6 3.5661 -0.6640 0.0052 6 6 2.2541 -1.1179 -0.0005 7 6 1.8057 -2.5104 -0.0003 8 8 0.6195 -2.7659 0.0055 9 6 2.8171 -3.6277 -0.0003 10 8 2.1270 -4.9052 0.0065 11 6 2.8896 -6.0098 0.0068 12 8 4.0939 -5.9124 0.0020 13 6 2.2437 -7.3714 0.0144 14 6 3.3122 -8.4342 0.0125 15 6 3.7916 -8.9288 -1.1868 16 6 4.7746 -9.8986 -1.1918 17 6 5.2735 -10.3858 0.0093 18 8 6.2353 -11.3438 0.0077 19 6 6.7562 -11.6902 1.2021 20 1 6.3496 -11.2711 2.1105 21 6 7.8140 -12.5844 1.2640 22 7 8.3091 -13.0954 0.1574 23 14 8.5362 -13.0639 2.9186 24 1 7.8224 -14.2556 3.4437 25 1 9.9776 -13.3819 2.7563 26 1 8.3826 -11.9352 3.8715 27 6 4.7860 -9.8913 1.2119 28 6 3.8076 -8.9166 1.2103 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 4.3050 1.4192 -0.0003 33 1 4.4659 -1.2614 0.0110 34 1 3.4384 -3.5552 -0.8929 35 1 3.4452 -3.5493 0.8870 36 1 1.6278 -7.4764 0.9074 37 1 1.6198 -7.4824 -0.8725 38 1 3.3994 -8.5532 -2.1204 39 1 5.1517 -10.2812 -2.1287 40 1 9.0488 -13.7213 0.2007 41 1 5.1716 -10.2684 2.1475 42 1 3.4283 -8.5313 2.1452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848718104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:14 Heat of formation + Delta-G solvation = -56.120999 kcal Electronic energy + Delta-G solvation = -27694.001472 eV Core-core repulsion = 23413.792303 eV Total energy + Delta-G solvation = -4280.209169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.56903 -41.72004 -40.73534 -40.13123 -38.44518 -37.31534 -34.43814 -34.40133 -33.13114 -32.68189 -31.78597 -29.97402 -28.30482 -28.01866 -27.03574 -24.42282 -23.64343 -23.11936 -22.35542 -21.51692 -20.72204 -19.84813 -18.94102 -18.83235 -18.09036 -17.90775 -17.64927 -17.24337 -16.44075 -16.39732 -16.35737 -16.02121 -15.78158 -15.69370 -15.48530 -15.07981 -14.70554 -14.60100 -14.47304 -14.28708 -13.96251 -13.78378 -13.65958 -13.58297 -13.35384 -12.96611 -12.86717 -12.50642 -12.34400 -12.26844 -12.12062 -11.95449 -11.87814 -11.61541 -11.17465 -11.11101 -10.78614 -10.35106 -10.08388 -9.76773 -8.94329 -8.46847 -6.15058 -0.26320 0.56645 0.61830 1.19960 1.22743 1.35427 1.39211 1.44558 1.53041 1.71335 1.78102 2.18187 2.70553 2.88042 3.18323 3.51746 3.54099 3.68255 3.77279 4.00120 4.02100 4.05866 4.07745 4.18650 4.21669 4.24338 4.33240 4.44654 4.55686 4.58837 4.61728 4.70407 4.80236 4.81485 5.05519 5.14982 5.26376 5.32413 5.47319 5.55779 5.61529 5.71830 5.74460 6.03246 6.10825 6.21844 6.75993 6.94834 6.97779 7.78267 8.76288 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.001709 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.001634 B =16377.532152 C =16977.938196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.268 5.268 3 N -0.294 5.294 4 C -0.011 4.011 5 C -0.158 4.158 6 C -0.093 4.093 7 C 0.440 3.560 8 O -0.460 6.460 9 C 0.029 3.971 10 O -0.348 6.348 11 C 0.467 3.533 12 O -0.526 6.526 13 C -0.049 4.049 14 C -0.158 4.158 15 C -0.052 4.052 16 C -0.206 4.206 17 C 0.116 3.884 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.245 4.245 28 C -0.054 4.054 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.217 0.783 33 H 0.193 0.807 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.565 26.213 1.140 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.057 5.057 3 N -0.129 5.129 4 C -0.184 4.184 5 C -0.187 4.187 6 C -0.218 4.218 7 C 0.316 3.684 8 O -0.334 6.334 9 C -0.046 4.046 10 O -0.264 6.264 11 C 0.311 3.689 12 O -0.414 6.414 13 C -0.085 4.085 14 C -0.159 4.159 15 C -0.070 4.070 16 C -0.226 4.226 17 C 0.066 3.934 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.177 1.177 27 C -0.264 4.264 28 C -0.072 4.072 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.234 0.766 33 H 0.210 0.790 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.490 26.778 0.892 31.461 hybrid contribution 1.462 -1.060 0.477 1.868 sum -15.029 25.718 1.370 29.819 Atomic orbital electron populations 1.22548 0.71449 1.06557 1.05698 1.46089 1.08761 1.01802 1.49032 1.73231 1.05587 1.14345 1.19765 1.24227 0.93519 0.95951 1.04731 1.22912 0.95906 0.95856 1.04016 1.21905 0.92878 0.89781 1.17278 1.21177 0.89132 0.86765 0.71311 1.90582 1.19627 1.86229 1.36927 1.23195 0.94407 0.79574 1.07411 1.86548 1.41048 1.14388 1.84467 1.24363 0.86051 0.87076 0.71450 1.90739 1.17216 1.87591 1.45808 1.20232 0.96366 0.82933 1.09011 1.19158 1.02548 1.01337 0.92856 1.20906 0.93688 0.93698 0.98683 1.20447 1.03355 1.03419 0.95338 1.19980 0.89365 0.88629 0.95440 1.83942 1.47588 1.48656 1.33662 1.21824 1.16108 1.27354 0.83687 0.88090 1.26600 0.95896 0.95861 1.03747 1.70183 1.25660 1.30207 1.29780 0.84583 0.77506 0.79300 0.74796 1.18657 1.19618 1.17745 1.21234 1.03725 1.04167 0.97286 1.20964 0.93829 0.93851 0.98583 0.88639 0.87039 0.87809 0.76617 0.78971 0.85618 0.85686 0.84349 0.84101 0.83173 0.86818 0.91837 0.86332 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.82 127.77 1.38 2.22 16 2 N -0.27 -4.34 3.76 -356.35 -1.34 -5.68 16 3 N -0.29 -4.99 11.90 -57.21 -0.68 -5.67 16 4 C -0.01 -0.13 12.02 85.14 1.02 0.89 16 5 C -0.16 -1.83 10.56 22.72 0.24 -1.59 16 6 C -0.09 -1.44 6.94 40.60 0.28 -1.16 16 7 C 0.44 7.29 7.19 27.79 0.20 7.49 16 8 O -0.46 -9.78 14.85 15.57 0.23 -9.55 16 9 C 0.03 0.44 5.44 71.24 0.39 0.83 16 10 O -0.35 -6.95 9.75 -45.04 -0.44 -7.39 16 11 C 0.47 10.63 7.95 71.24 0.57 11.19 16 12 O -0.53 -15.87 15.78 21.95 0.35 -15.52 16 13 C -0.05 -0.93 5.94 29.10 0.17 -0.76 16 14 C -0.16 -4.67 4.38 -19.83 -0.09 -4.76 16 15 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 16 C -0.21 -8.82 9.99 22.39 0.22 -8.59 16 17 C 0.12 5.85 6.65 22.57 0.15 6.00 16 18 O -0.23 -14.12 9.76 -22.83 -0.22 -14.34 16 19 C -0.41 -24.30 9.49 67.92 0.64 -23.66 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 21 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 22 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 23 Si 1.02 43.06 29.55 68.60 2.03 45.09 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 27 C -0.24 -10.71 9.17 22.39 0.21 -10.50 16 28 C -0.05 -1.83 9.69 22.25 0.22 -1.62 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 1.23 6.33 -2.39 -0.02 1.22 16 32 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 34 H 0.13 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.13 1.59 8.13 -2.39 -0.02 1.57 16 36 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 37 H 0.14 1.89 8.08 -2.39 -0.02 1.87 16 38 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 42 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -83.42 376.24 7.58 -75.84 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.07 Total: 20.12 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 6.29 Total: -26.37 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -1.72 Total: -67.88 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.08 Total: -46.80 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -83.42 7.58 -75.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848718104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.719 kcal (2) G-P(sol) polarization free energy of solvation -83.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds