Wall clock time and date at job start Wed Apr 1 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00053 * 2 1 4 4 O 1.20825 * 120.00387 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99837 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46787 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.46519 * 180.02562 * 6 5 3 8 8 C 1.36783 * 120.00157 * 269.72258 * 7 6 5 9 9 H 1.07995 * 120.00353 * 141.82364 * 8 7 6 10 10 C 1.39117 * 119.99850 * 321.82604 * 8 7 6 11 11 N 1.31317 * 120.00379 * 340.77889 * 10 8 7 12 12 Si 1.86808 * 119.99966 * 160.77629 * 10 8 7 13 13 H 1.48498 * 109.47187 * 59.99915 * 12 10 8 14 14 H 1.48497 * 109.47195 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47003 * 300.00279 * 12 10 8 16 16 C 1.34776 * 119.99953 * 90.00493 * 7 6 5 17 17 O 1.21543 * 120.00349 * 354.42468 * 16 7 6 18 18 C 1.48185 * 119.99905 * 174.43206 * 16 7 6 19 19 C 1.41982 * 126.85350 * 174.12473 * 18 16 7 20 20 C 1.36681 * 103.81759 * 179.85431 * 19 18 16 21 21 C 1.47857 * 126.80688 * 180.12387 * 20 19 18 22 22 C 1.39565 * 120.14146 * 0.03121 * 21 20 19 23 23 C 1.37964 * 119.85089 * 179.72033 * 22 21 20 24 24 C 1.38353 * 120.14568 * 0.55165 * 23 22 21 25 25 C 1.38357 * 120.28743 * 359.72101 * 24 23 22 26 26 C 1.37960 * 120.14497 * 0.02562 * 25 24 23 27 27 O 1.34472 * 106.38546 * 0.39919 * 20 19 18 28 28 N 1.20869 * 111.76120 * 359.72513 * 27 20 19 29 29 H 1.08992 * 109.47606 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47260 * 300.00401 * 1 2 3 31 31 H 1.09003 * 109.46984 * 59.99452 * 1 2 3 32 32 H 1.09002 * 109.46813 * 60.00389 * 5 3 2 33 33 H 1.08994 * 109.47118 * 300.00037 * 5 3 2 34 34 H 1.09000 * 109.46968 * 60.00064 * 6 5 3 35 35 H 1.08994 * 109.47338 * 299.99922 * 6 5 3 36 36 H 0.96996 * 120.00266 * 184.18681 * 11 10 8 37 37 H 1.08005 * 128.09200 * 359.97438 * 19 18 16 38 38 H 1.08000 * 120.07394 * 359.96883 * 22 21 20 39 39 H 1.07997 * 119.92494 * 180.29075 * 23 22 21 40 40 H 1.07995 * 119.85583 * 179.69832 * 24 23 22 41 41 H 1.08000 * 119.92290 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.07247 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0023 8 6 6.1468 2.8602 1.1817 9 1 7.0826 2.3308 1.2839 10 6 5.6367 3.5844 2.2544 11 7 4.7336 4.5151 2.0481 12 14 6.2365 3.2329 3.9883 13 1 7.7012 3.4660 4.0622 14 1 5.5427 4.1331 4.9440 15 1 5.9420 1.8198 4.3370 16 6 6.1352 2.8537 -1.1700 17 8 5.5372 2.7201 -2.2197 18 6 7.6033 3.0552 -1.1742 19 6 8.4670 3.0013 -2.2998 20 6 9.7032 3.2555 -1.7752 21 6 10.9824 3.3224 -2.5137 22 6 11.0065 3.1151 -3.8937 23 6 12.2026 3.1845 -4.5778 24 6 13.3780 3.4476 -3.8971 25 6 13.3617 3.6485 -2.5283 26 6 12.1717 3.5869 -1.8331 27 8 9.5263 3.4268 -0.4532 28 7 8.3650 3.3135 -0.1381 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9557 0.7809 -0.8909 33 1 3.9565 0.7805 0.8891 34 1 3.6108 3.2363 0.8889 35 1 3.6102 3.2359 -0.8910 36 1 4.4225 5.0613 2.7868 37 1 8.2076 2.8070 -3.3301 38 1 10.0903 2.9047 -4.4255 39 1 12.2219 3.0289 -5.6463 40 1 14.3123 3.4961 -4.4365 41 1 14.2827 3.8539 -2.0029 42 1 12.1602 3.7443 -0.7647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:04 Heat of formation + Delta-G solvation = -19.270835 kcal Electronic energy + Delta-G solvation = -29013.926881 eV Core-core repulsion = 24735.315656 eV Total energy + Delta-G solvation = -4278.611226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.31286 -40.08572 -39.13208 -38.58528 -36.21712 -35.10555 -33.51517 -32.84434 -32.05251 -31.09067 -30.66795 -29.23417 -27.57475 -25.18893 -24.82486 -23.51697 -23.09597 -21.92606 -21.40756 -20.23433 -19.21892 -18.26846 -17.35809 -17.13588 -16.59892 -16.34154 -16.17871 -16.10615 -15.84805 -15.09604 -14.86770 -14.54279 -14.39441 -13.80505 -13.74905 -13.62250 -13.38676 -13.12905 -13.01063 -12.99836 -12.59726 -12.25003 -12.06132 -11.75064 -11.55027 -11.30251 -11.20444 -11.14305 -11.01490 -10.56841 -10.48935 -10.45478 -10.17537 -10.10066 -10.03189 -9.65221 -9.29564 -9.10371 -8.87884 -8.19413 -7.70997 -6.49188 -4.17401 0.72870 1.26120 2.09782 2.42825 2.63617 3.01473 3.13899 3.18302 3.20708 3.34414 3.75119 3.98301 4.20166 4.32021 4.65741 4.79781 4.82079 4.89389 4.98759 5.12136 5.22570 5.27125 5.28717 5.29206 5.40993 5.59782 5.62474 5.68091 5.76926 5.79297 5.87024 5.91050 6.08373 6.23024 6.32594 6.34738 6.39725 6.44821 6.69137 6.77922 6.78761 7.22024 7.44643 7.68309 8.14652 8.27979 8.73000 8.96092 9.26668 9.67857 10.52272 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002858 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.596897 B = 9796.114561 C =11485.459277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.125 3.875 7 N -0.409 5.409 8 C -0.336 4.336 9 H 0.105 0.895 10 C 0.051 3.949 11 N -0.850 5.850 12 Si 0.918 3.082 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.528 3.472 17 O -0.594 6.594 18 C 0.007 3.993 19 C -0.168 4.168 20 C -0.029 4.029 21 C -0.004 4.004 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.100 4.100 27 O 0.109 5.891 28 N -0.288 5.288 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.275 0.725 37 H 0.173 0.827 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 -5.383 -6.430 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.002 3.998 7 N -0.125 5.125 8 C -0.465 4.465 9 H 0.122 0.878 10 C -0.157 4.157 11 N -0.485 5.485 12 Si 0.744 3.256 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.195 1.195 16 C 0.317 3.683 17 O -0.480 6.480 18 C -0.151 4.151 19 C -0.190 4.190 20 C -0.091 4.091 21 C -0.005 4.005 22 C -0.115 4.115 23 C -0.136 4.136 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.118 4.118 27 O 0.034 5.966 28 N 0.011 4.989 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.190 0.810 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.196 -4.878 -5.493 11.006 hybrid contribution -0.036 -0.095 0.145 0.177 sum 8.160 -4.973 -5.348 10.951 Atomic orbital electron populations 1.23174 0.77298 1.03062 1.02363 1.86536 1.22790 1.34327 1.84635 1.24002 0.92291 0.80926 0.71754 1.90654 1.67258 1.36203 1.45058 1.21856 0.86036 1.02939 1.05487 1.21316 0.81160 0.91487 1.05844 1.43321 1.04926 1.59605 1.04659 1.19678 1.07710 1.31666 0.87411 0.87790 1.25488 0.95914 0.93619 1.00728 1.69782 1.28819 1.16526 1.33400 0.86118 0.79547 0.78694 0.81245 1.19172 1.20754 1.19534 1.17222 0.83496 0.83119 0.84478 1.90635 1.68101 1.57484 1.31731 1.23400 0.97499 1.05419 0.88827 1.22539 0.90048 1.05384 1.01065 1.22345 0.94972 1.06734 0.85063 1.17668 0.88776 1.01730 0.92351 1.21167 0.98884 0.99075 0.92393 1.21045 0.92167 1.00348 1.00033 1.21261 0.98242 0.99510 0.94573 1.21085 0.97823 1.00328 0.94420 1.21333 0.91475 0.98404 1.00593 1.84982 1.23678 1.65465 1.22512 1.74744 0.88217 1.14095 1.21819 0.88589 0.92135 0.92154 0.88214 0.87549 0.86118 0.91269 0.91398 0.80990 0.85218 0.85520 0.85940 0.85612 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.97 10.57 -39.25 -0.41 -6.38 16 3 C 0.47 8.97 7.96 36.01 0.29 9.26 16 4 O -0.50 -10.94 15.73 -18.75 -0.29 -11.24 16 5 C -0.12 -2.48 6.14 -27.88 -0.17 -2.65 16 6 C 0.13 3.01 4.24 -4.04 -0.02 3.00 16 7 N -0.41 -10.35 2.51 -115.77 -0.29 -10.64 16 8 C -0.34 -8.55 7.79 -15.02 -0.12 -8.67 16 9 H 0.10 2.64 6.34 -52.49 -0.33 2.31 16 10 C 0.05 1.28 5.00 -17.45 -0.09 1.20 16 11 N -0.85 -22.53 11.36 55.50 0.63 -21.90 16 12 Si 0.92 19.63 29.60 -169.99 -5.03 14.60 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 C 0.53 13.30 7.64 -12.17 -0.09 13.20 16 17 O -0.59 -15.58 16.59 5.33 0.09 -15.49 16 18 C 0.01 0.15 6.85 -82.63 -0.57 -0.42 16 19 C -0.17 -3.07 10.34 -38.71 -0.40 -3.47 16 20 C -0.03 -0.47 7.15 -36.21 -0.26 -0.73 16 21 C 0.00 -0.05 5.87 -104.97 -0.62 -0.67 16 22 C -0.10 -1.08 9.58 -39.19 -0.38 -1.46 16 23 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 24 C -0.12 -1.01 10.04 -39.49 -0.40 -1.40 16 25 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 26 C -0.10 -1.14 9.73 -39.19 -0.38 -1.52 16 27 O 0.11 2.05 11.01 16.03 0.18 2.22 16 28 N -0.29 -6.39 9.14 33.35 0.30 -6.09 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 34 H 0.12 3.13 5.43 -51.93 -0.28 2.85 16 35 H 0.07 1.76 7.46 -51.93 -0.39 1.37 16 36 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.17 2.73 7.46 -52.48 -0.39 2.34 16 38 H 0.13 1.32 7.15 -52.49 -0.38 0.94 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.42 7.96 -52.49 -0.42 1.01 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -31.67 371.78 -6.86 -38.52 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.70 Total: 6.61 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.92 Total: 4.18 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.64 Total: -38.63 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.44 Total: -30.89 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.67 -6.86 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.249 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds