Wall clock time and date at job start Wed Apr 1 2020 03:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 116.99862 * 2 1 4 4 O 1.20823 * 120.00389 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99849 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47253 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47250 * 180.02562 * 6 5 3 8 8 C 1.36872 * 119.99696 * 269.99741 * 7 6 5 9 9 H 1.08008 * 119.99443 * 143.87178 * 8 7 6 10 10 C 1.39011 * 120.00448 * 323.86451 * 8 7 6 11 11 N 1.31393 * 120.00185 * 160.57086 * 10 8 7 12 12 Si 1.86795 * 119.99828 * 340.57727 * 10 8 7 13 13 H 1.48502 * 109.47621 * 95.46410 * 12 10 8 14 14 H 1.48503 * 109.47032 * 215.46284 * 12 10 8 15 15 H 1.48501 * 109.47309 * 335.46205 * 12 10 8 16 16 C 1.34771 * 119.99993 * 90.00183 * 7 6 5 17 17 O 1.21703 * 120.00262 * 356.25043 * 16 7 6 18 18 C 1.47004 * 120.00016 * 176.25186 * 16 7 6 19 19 N 1.35894 * 126.62601 * 283.97336 * 18 16 7 20 20 C 1.29936 * 108.75084 * 179.97438 * 19 18 16 21 21 O 1.34053 * 109.81070 * 0.02562 * 20 19 18 22 22 C 1.34785 * 108.24103 * 359.76162 * 21 20 19 23 23 C 1.47533 * 126.77560 * 180.27299 * 22 21 20 24 24 C 1.39718 * 120.16155 * 175.34481 * 23 22 21 25 25 C 1.37921 * 119.83896 * 179.69487 * 24 23 22 26 26 C 1.38384 * 120.15550 * 0.59997 * 25 24 23 27 27 C 1.38383 * 120.32150 * 359.67903 * 26 25 24 28 28 C 1.37921 * 120.16228 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47313 * 299.99328 * 1 2 3 30 30 H 1.08993 * 109.47265 * 59.99711 * 1 2 3 31 31 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47458 * 60.00447 * 5 3 2 33 33 H 1.09002 * 109.47527 * 300.00186 * 5 3 2 34 34 H 1.09000 * 109.46660 * 59.99791 * 6 5 3 35 35 H 1.09002 * 109.46869 * 300.00421 * 6 5 3 36 36 H 0.96996 * 119.99824 * 180.02562 * 11 10 8 37 37 H 1.08003 * 125.09301 * 180.02562 * 20 19 18 38 38 H 1.08003 * 120.07821 * 359.97438 * 24 23 22 39 39 H 1.07997 * 119.92063 * 180.29467 * 25 24 23 40 40 H 1.08003 * 119.83961 * 179.69235 * 26 25 24 41 41 H 1.08009 * 119.92014 * 180.02562 * 27 26 25 42 42 H 1.07996 * 120.08194 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1474 2.8538 1.1838 9 1 7.0994 2.3513 1.2725 10 6 5.6174 3.5360 2.2729 11 7 6.0458 3.2705 3.4863 12 14 4.2961 4.8301 2.0112 13 1 2.9575 4.2176 2.2068 14 1 4.4831 5.9331 2.9878 15 1 4.3970 5.3686 0.6310 16 6 6.1350 2.8550 -1.1687 17 8 5.5320 2.7553 -2.2211 18 6 7.5963 3.0149 -1.1712 19 7 8.2866 4.1630 -0.9430 20 6 9.5582 3.9098 -1.0285 21 8 9.7452 2.6128 -1.3108 22 6 8.5370 2.0224 -1.4020 23 6 8.2681 0.6010 -1.6919 24 6 6.9593 0.1132 -1.6588 25 6 6.7148 -1.2153 -1.9371 26 6 7.7634 -2.0672 -2.2364 27 6 9.0629 -1.5924 -2.2653 28 6 9.3218 -0.2649 -1.9951 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7810 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.6107 3.2356 0.8907 35 1 3.6099 3.2368 -0.8893 36 1 5.6757 3.7463 4.2462 37 1 10.3464 4.6357 -0.8925 38 1 6.1405 0.7759 -1.4202 39 1 5.7031 -1.5927 -1.9165 40 1 7.5666 -3.1078 -2.4486 41 1 9.8764 -2.2630 -2.5001 42 1 10.3364 0.1044 -2.0185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:20 Heat of formation + Delta-G solvation = -71.509837 kcal Electronic energy + Delta-G solvation = -30619.597329 eV Core-core repulsion = 26338.720850 eV Total energy + Delta-G solvation = -4280.876479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.18977 -41.72283 -40.81502 -39.83191 -37.79662 -37.10918 -35.76871 -34.32758 -33.56084 -32.71599 -31.91558 -29.84435 -28.78037 -27.16820 -26.42909 -24.61282 -24.38097 -23.04981 -22.23746 -22.02605 -21.16745 -19.77548 -19.03158 -18.35637 -18.28888 -17.92940 -17.69920 -17.49906 -17.23252 -16.83710 -16.58013 -16.24775 -15.77175 -15.60528 -15.37356 -14.92920 -14.65261 -14.53863 -14.50266 -14.37090 -14.11816 -13.84150 -13.83131 -13.61983 -13.10179 -12.99652 -12.80429 -12.39801 -12.37614 -12.19008 -11.99936 -11.90255 -11.83019 -11.70625 -11.63861 -11.32852 -10.92345 -10.81882 -10.05855 -9.92230 -9.06105 -8.63425 -6.25496 -0.44329 0.44827 0.96253 1.02260 1.07798 1.20919 1.32255 1.35250 1.45656 1.61946 1.76551 2.05494 2.43394 2.78197 2.87905 3.36294 3.57774 3.67753 3.71224 3.85417 3.95587 4.01700 4.06662 4.23439 4.27922 4.29863 4.30781 4.42314 4.45295 4.51561 4.58121 4.67150 4.72624 4.76358 4.95289 5.09565 5.18069 5.22906 5.23054 5.48274 5.52126 5.54501 5.85737 6.00002 6.04565 6.58465 6.61011 6.76302 7.12987 7.45242 8.50186 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.005316 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.245593 B = 5265.470857 C = 7409.161750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.539 6.539 5 C -0.117 4.117 6 C 0.111 3.889 7 N -0.447 5.447 8 C -0.329 4.329 9 H 0.080 0.920 10 C 0.046 3.954 11 N -0.881 5.881 12 Si 0.914 3.086 13 H -0.261 1.261 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.561 3.439 17 O -0.598 6.598 18 C -0.028 4.028 19 N -0.495 5.495 20 C 0.193 3.807 21 O -0.192 6.192 22 C 0.023 3.977 23 C -0.045 4.045 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.099 4.099 27 C -0.116 4.116 28 C -0.101 4.101 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.283 0.717 37 H 0.309 0.691 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -11.706 -7.619 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.320 3.680 4 O -0.429 6.429 5 C -0.156 4.156 6 C -0.012 4.012 7 N -0.166 5.166 8 C -0.456 4.456 9 H 0.097 0.903 10 C -0.160 4.160 11 N -0.517 5.517 12 Si 0.741 3.259 13 H -0.187 1.187 14 H -0.204 1.204 15 H -0.201 1.201 16 C 0.350 3.650 17 O -0.483 6.483 18 C -0.149 4.149 19 N -0.223 5.223 20 C -0.034 4.034 21 O -0.079 6.079 22 C -0.032 4.032 23 C -0.046 4.046 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.324 0.676 38 H 0.126 0.874 39 H 0.165 0.835 40 H 0.182 0.818 41 H 0.183 0.817 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.696 -10.839 -7.752 13.433 hybrid contribution -0.558 1.042 0.387 1.244 sum 1.139 -9.797 -7.365 12.309 Atomic orbital electron populations 1.23629 0.74461 1.06072 1.02591 1.86500 1.25322 1.31824 1.83593 1.23606 0.91736 0.81548 0.71093 1.90643 1.67816 1.37451 1.46959 1.21606 0.87611 0.98851 1.07483 1.21464 0.81406 0.96101 1.02182 1.43614 1.04481 1.63230 1.05303 1.18660 1.06302 1.34181 0.86488 0.90262 1.25626 0.98828 0.96995 0.94548 1.69732 1.43555 1.39721 0.98678 0.86359 0.80218 0.80852 0.78503 1.18724 1.20381 1.20139 1.16940 0.85084 0.79553 0.83416 1.90698 1.69236 1.56447 1.31923 1.21622 0.95234 0.90345 1.07670 1.70615 1.05450 1.27916 1.18301 1.29187 0.95480 0.81853 0.96857 1.84321 1.30718 1.24545 1.68316 1.21873 0.81589 0.94200 1.05572 1.17791 0.95433 0.86384 1.04952 1.21522 0.95130 0.97653 0.99126 1.21340 1.01459 0.91752 0.99327 1.21759 0.92030 1.01150 0.96713 1.21500 0.98315 0.94490 0.99024 1.21486 0.98091 0.94174 0.98178 0.92118 0.91799 0.84270 0.86178 0.85842 0.91601 0.90776 0.90661 0.67610 0.87432 0.83511 0.81777 0.81677 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.24 10.57 -51.42 -0.54 -10.79 16 3 C 0.48 16.96 7.96 71.24 0.57 17.53 16 4 O -0.54 -22.10 15.73 21.97 0.35 -21.76 16 5 C -0.12 -4.40 6.14 29.85 0.18 -4.21 16 6 C 0.11 5.13 3.44 86.38 0.30 5.43 16 7 N -0.45 -22.37 2.21 -639.70 -1.41 -23.78 16 8 C -0.33 -17.70 9.11 84.09 0.77 -16.93 16 9 H 0.08 4.65 7.56 -2.91 -0.02 4.63 16 10 C 0.05 2.50 5.36 84.94 0.46 2.95 16 11 N -0.88 -48.82 13.96 21.68 0.30 -48.52 16 12 Si 0.91 44.68 24.77 68.60 1.70 46.38 16 13 H -0.26 -12.35 6.72 99.48 0.67 -11.68 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.28 -14.23 7.09 99.48 0.71 -13.52 16 16 C 0.56 28.15 4.74 86.54 0.41 28.56 16 17 O -0.60 -31.21 15.97 -4.36 -0.07 -31.28 16 18 C -0.03 -1.29 5.35 40.92 0.22 -1.07 16 19 N -0.49 -21.40 11.33 -303.74 -3.44 -24.84 16 20 C 0.19 5.97 13.16 130.52 1.72 7.69 16 21 O -0.19 -6.40 10.56 -4.88 -0.05 -6.45 16 22 C 0.02 0.91 7.15 24.83 0.18 1.08 16 23 C -0.04 -1.60 5.87 -20.11 -0.12 -1.72 16 24 C -0.12 -4.15 9.38 22.55 0.21 -3.94 16 25 C -0.12 -3.21 10.03 22.23 0.22 -2.98 16 26 C -0.10 -1.98 10.04 22.34 0.22 -1.75 16 27 C -0.12 -2.32 10.03 22.23 0.22 -2.09 16 28 C -0.10 -2.70 9.74 22.55 0.22 -2.48 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 31 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.12 4.18 7.57 -2.39 -0.02 4.16 16 33 H 0.12 4.49 8.14 -2.39 -0.02 4.48 16 34 H 0.07 3.19 2.80 -2.39 -0.01 3.19 16 35 H 0.07 3.53 7.43 -2.39 -0.02 3.51 16 36 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.31 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.11 4.47 3.84 -2.91 -0.01 4.46 16 39 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.14 3.22 7.96 -2.91 -0.02 3.19 16 Total: -1.00 -77.90 364.30 4.84 -73.07 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.04 Total: 20.19 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 6.97 Total: 27.77 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -4.55 Total: -97.14 kcal Atomic # 8 Polarization: -69.95 SS G_CDS: -0.32 Total: -70.27 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.70 Total: 46.38 kcal Total: -77.90 4.84 -73.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.557 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds