Wall clock time and date at job start Wed Apr 1 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00423 * 2 1 4 4 O 1.20832 * 119.99699 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00432 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47308 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.47363 * 179.97438 * 6 5 3 8 8 C 1.36942 * 119.99910 * 263.97564 * 7 6 5 9 9 H 1.07997 * 119.99996 * 344.76139 * 8 7 6 10 10 C 1.38986 * 119.99930 * 164.77134 * 8 7 6 11 11 N 1.31399 * 120.00267 * 105.17727 * 10 8 7 12 12 Si 1.86802 * 119.99577 * 285.17598 * 10 8 7 13 13 H 1.48504 * 109.46909 * 95.19819 * 12 10 8 14 14 H 1.48500 * 109.46931 * 215.19515 * 12 10 8 15 15 H 1.48497 * 109.47217 * 335.19732 * 12 10 8 16 16 C 1.34775 * 119.99925 * 83.96695 * 7 6 5 17 17 O 1.21647 * 119.99934 * 174.49432 * 16 7 6 18 18 C 1.47365 * 119.99953 * 354.48799 * 16 7 6 19 19 C 1.36337 * 126.37140 * 175.71881 * 18 16 7 20 20 O 1.34288 * 107.10519 * 180.26425 * 19 18 16 21 21 C 1.34478 * 108.17768 * 0.02562 * 20 19 18 22 22 C 1.47865 * 125.48250 * 179.97438 * 21 20 19 23 23 C 1.39547 * 120.14236 * 187.31784 * 22 21 20 24 24 C 1.37967 * 119.85351 * 179.67778 * 23 22 21 25 25 C 1.38352 * 120.14386 * 0.61545 * 24 23 22 26 26 C 1.38351 * 120.28513 * 359.68146 * 25 24 23 27 27 C 1.37972 * 120.14420 * 359.97438 * 26 25 24 28 28 N 1.30909 * 109.03776 * 359.97438 * 21 20 19 29 29 H 1.09003 * 109.47444 * 300.00107 * 1 2 3 30 30 H 1.09007 * 109.47030 * 59.99888 * 1 2 3 31 31 H 1.09003 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47552 * 59.99659 * 5 3 2 33 33 H 1.09007 * 109.46803 * 300.00091 * 5 3 2 34 34 H 1.09001 * 109.47133 * 60.00008 * 6 5 3 35 35 H 1.08994 * 109.46964 * 299.99811 * 6 5 3 36 36 H 0.97009 * 120.00044 * 185.11304 * 11 10 8 37 37 H 1.07997 * 126.44911 * 0.24114 * 19 18 16 38 38 H 1.08003 * 120.07564 * 359.97438 * 23 22 21 39 39 H 1.08004 * 119.93234 * 180.34215 * 24 23 22 40 40 H 1.08002 * 119.86120 * 179.70098 * 25 24 23 41 41 H 1.08008 * 119.92948 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.06947 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8187 -0.0011 8 6 6.1404 2.9793 1.1783 9 1 5.6117 3.2932 2.0661 10 6 7.5081 2.7383 1.2327 11 7 8.3507 3.7448 1.2929 12 14 8.1485 0.9836 1.2202 13 1 8.4983 0.5942 -0.1695 14 1 9.3565 0.8914 2.0790 15 1 7.0999 0.0702 1.7412 16 6 6.1426 2.7310 -1.1617 17 8 7.3480 2.8946 -1.1747 18 6 5.4253 2.4369 -2.4150 19 6 5.9656 2.3997 -3.6662 20 8 4.9705 2.1023 -4.5174 21 6 3.8384 1.9593 -3.8059 22 6 2.5095 1.6300 -4.3643 23 6 1.3792 1.6575 -3.5463 24 6 0.1412 1.3557 -4.0752 25 6 0.0206 1.0138 -5.4103 26 6 1.1381 0.9787 -6.2252 27 6 2.3810 1.2853 -5.7104 28 7 4.1021 2.1587 -2.5392 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9557 0.7809 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2363 0.8889 35 1 3.6101 3.2358 -0.8910 36 1 9.3060 3.5805 1.2560 37 1 6.9993 2.5765 -3.9242 38 1 1.4727 1.9192 -2.5026 39 1 -0.7352 1.3820 -3.4445 40 1 -0.9501 0.7737 -5.8184 41 1 1.0373 0.7115 -7.2669 42 1 3.2524 1.2579 -6.3477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:24 Heat of formation + Delta-G solvation = -46.521110 kcal Electronic energy + Delta-G solvation = -30832.808609 eV Core-core repulsion = 26553.015722 eV Total energy + Delta-G solvation = -4279.792886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.31643 -41.48658 -40.24423 -39.91737 -37.59276 -36.43824 -35.90099 -34.72537 -33.26719 -32.11660 -31.93368 -30.05169 -28.64734 -27.40331 -25.59849 -24.82829 -24.20509 -23.24506 -22.30828 -21.72020 -21.02949 -19.56886 -18.94141 -18.28824 -17.85829 -17.66826 -17.43799 -17.31838 -16.94135 -16.81293 -16.52917 -16.02143 -15.76629 -15.42612 -15.04382 -14.87748 -14.53151 -14.42113 -14.35715 -14.21783 -13.93314 -13.88602 -13.79305 -13.51860 -13.04949 -12.83284 -12.67479 -12.52908 -12.40246 -12.08445 -12.05611 -11.79313 -11.72086 -11.58422 -11.41139 -10.98157 -10.72359 -10.26350 -9.95934 -9.79382 -9.31910 -8.97063 -5.55703 -0.36189 0.40795 0.45323 1.20581 1.23025 1.35721 1.43375 1.50688 1.54326 1.75500 2.19314 2.40689 2.68273 2.81008 2.85558 3.13170 3.78824 3.86587 3.94436 4.02401 4.05936 4.07955 4.22104 4.29317 4.36991 4.38189 4.45698 4.48704 4.54742 4.57921 4.70821 4.74521 4.81212 4.87047 4.92419 5.06905 5.23045 5.32990 5.38621 5.41975 5.48937 5.52240 5.88119 5.94857 6.47402 6.64195 6.77071 7.11771 7.41264 8.05813 8.19497 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.004507 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.625195 B = 6210.677461 C = 7866.122184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.485 3.515 4 O -0.526 6.526 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.391 5.391 8 C -0.518 4.518 9 H 0.092 0.908 10 C 0.193 3.807 11 N -0.726 5.726 12 Si 0.859 3.141 13 H -0.285 1.285 14 H -0.268 1.268 15 H -0.257 1.257 16 C 0.447 3.553 17 O -0.613 6.613 18 C -0.052 4.052 19 C -0.014 4.014 20 O -0.189 6.189 21 C 0.221 3.779 22 C -0.039 4.039 23 C -0.091 4.091 24 C -0.122 4.122 25 C -0.090 4.090 26 C -0.116 4.116 27 C -0.094 4.094 28 N -0.467 5.467 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.290 0.710 37 H 0.245 0.755 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 -9.287 -13.224 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.329 3.671 4 O -0.416 6.416 5 C -0.152 4.152 6 C 0.011 3.989 7 N -0.105 5.105 8 C -0.633 4.633 9 H 0.109 0.891 10 C -0.040 4.040 11 N -0.346 5.346 12 Si 0.679 3.321 13 H -0.211 1.211 14 H -0.193 1.193 15 H -0.180 1.180 16 C 0.241 3.759 17 O -0.504 6.504 18 C -0.173 4.173 19 C -0.087 4.087 20 O -0.075 6.075 21 C 0.016 3.984 22 C -0.041 4.041 23 C -0.110 4.110 24 C -0.140 4.140 25 C -0.109 4.109 26 C -0.134 4.134 27 C -0.113 4.113 28 N -0.198 5.198 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.261 0.739 38 H 0.129 0.871 39 H 0.167 0.833 40 H 0.181 0.819 41 H 0.181 0.819 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.836 -8.736 -12.598 23.519 hybrid contribution 1.423 -0.270 0.040 1.449 sum -16.413 -9.006 -12.557 22.543 Atomic orbital electron populations 1.23592 0.74634 1.05674 1.02794 1.86520 1.25275 1.32617 1.83863 1.23389 0.91328 0.81384 0.70973 1.90612 1.67434 1.36866 1.46642 1.21619 0.88058 1.00129 1.05348 1.21318 0.80194 0.94656 1.02729 1.43439 1.05292 1.56971 1.04804 1.18260 0.91847 1.63945 0.89285 0.89069 1.25352 0.95222 0.98697 0.84713 1.70577 1.05814 1.36522 1.21724 0.87361 0.78815 0.87886 0.78070 1.21120 1.19332 1.18043 1.16667 0.86783 0.90589 0.81857 1.90574 1.14414 1.60726 1.84691 1.22020 0.90148 1.08829 0.96298 1.25411 0.94147 1.02287 0.86830 1.84345 1.16967 1.67419 1.38796 1.24486 0.88243 1.00579 0.85049 1.17479 0.85064 1.06281 0.95243 1.21237 0.92210 0.98079 0.99480 1.21363 0.96380 0.99370 0.96873 1.21785 1.00405 0.95821 0.92842 1.21479 0.90997 0.99085 1.01798 1.21451 1.00082 0.97311 0.92466 1.71214 1.13778 1.17706 1.17124 0.91925 0.91389 0.85106 0.87894 0.88030 0.91426 0.89460 0.89917 0.73877 0.87096 0.83349 0.81857 0.81936 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.37 -10.33 10.56 -51.39 -0.54 -10.87 16 3 C 0.49 16.41 7.15 71.23 0.51 16.92 16 4 O -0.53 -19.16 15.11 21.94 0.33 -18.82 16 5 C -0.11 -4.34 5.45 29.85 0.16 -4.18 16 6 C 0.14 6.01 4.24 86.38 0.37 6.38 16 7 N -0.39 -20.63 2.63 -639.30 -1.68 -22.31 16 8 C -0.52 -29.44 9.45 84.07 0.79 -28.64 16 9 H 0.09 5.24 7.99 -2.91 -0.02 5.22 16 10 C 0.19 10.88 3.08 84.94 0.26 11.14 16 11 N -0.73 -41.46 13.69 21.67 0.30 -41.16 16 12 Si 0.86 42.80 28.13 68.60 1.93 44.73 16 13 H -0.28 -15.23 7.11 99.48 0.71 -14.52 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 16 C 0.45 23.86 7.14 86.65 0.62 24.48 16 17 O -0.61 -36.31 13.51 -4.18 -0.06 -36.36 16 18 C -0.05 -2.32 6.37 40.49 0.26 -2.06 16 19 C -0.01 -0.51 11.94 67.38 0.80 0.30 16 20 O -0.19 -6.23 10.47 -4.04 -0.04 -6.27 16 21 C 0.22 7.53 7.86 87.38 0.69 8.22 16 22 C -0.04 -1.07 5.87 -20.10 -0.12 -1.19 16 23 C -0.09 -2.33 9.68 22.52 0.22 -2.11 16 24 C -0.12 -2.13 10.03 22.23 0.22 -1.91 16 25 C -0.09 -1.14 10.04 22.32 0.22 -0.91 16 26 C -0.12 -1.58 10.03 22.23 0.22 -1.36 16 27 C -0.09 -1.88 9.71 22.52 0.22 -1.66 16 28 N -0.47 -18.45 5.63 -294.26 -1.66 -20.10 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.15 16 30 H 0.07 1.17 8.13 -2.38 -0.02 1.16 16 31 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 4.12 6.15 -2.39 -0.01 4.10 16 33 H 0.10 3.88 8.14 -2.38 -0.02 3.86 16 34 H 0.07 3.01 7.90 -2.39 -0.02 2.99 16 35 H 0.09 3.93 5.87 -2.39 -0.01 3.92 16 36 H 0.29 15.15 8.32 -92.70 -0.77 14.38 16 37 H 0.25 7.75 8.06 -2.91 -0.02 7.72 16 38 H 0.11 3.41 6.33 -2.91 -0.02 3.39 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 41 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.14 2.47 7.91 -2.91 -0.02 2.45 16 Total: -1.00 -74.49 364.93 6.29 -68.20 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.07 Total: 17.88 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 6.65 Total: 25.08 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.04 Total: -83.57 kcal Atomic # 8 Polarization: -72.01 SS G_CDS: -0.31 Total: -72.32 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.93 Total: 44.73 kcal Total: -74.49 6.29 -68.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.680 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds