Wall clock time and date at job start Wed Apr 1 2020 03:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00137 * 2 1 4 4 O 1.20824 * 119.99592 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00209 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47430 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47482 * 179.97438 * 6 5 3 8 8 C 1.36791 * 120.00203 * 270.00312 * 7 6 5 9 9 H 1.07995 * 119.99654 * 138.13877 * 8 7 6 10 10 C 1.39056 * 119.99892 * 318.14028 * 8 7 6 11 11 N 1.31371 * 119.99943 * 168.08005 * 10 8 7 12 12 Si 1.86806 * 119.99991 * 348.07846 * 10 8 7 13 13 H 1.48495 * 109.46981 * 92.10450 * 12 10 8 14 14 H 1.48500 * 109.46677 * 212.10669 * 12 10 8 15 15 H 1.48498 * 109.47003 * 332.10084 * 12 10 8 16 16 C 1.34775 * 119.99405 * 90.00105 * 7 6 5 17 17 O 1.21787 * 120.00468 * 5.37344 * 16 7 6 18 18 C 1.46233 * 119.99596 * 185.37073 * 16 7 6 19 19 O 1.35387 * 126.83220 * 354.48438 * 18 16 7 20 20 C 1.33705 * 107.95499 * 180.29689 * 19 18 16 21 21 N 1.30360 * 109.75537 * 359.72771 * 20 19 18 22 22 C 1.34550 * 109.03026 * 0.02562 * 21 20 19 23 23 C 1.48076 * 126.53919 * 179.97438 * 22 21 20 24 24 C 1.39506 * 120.14082 * 316.52325 * 23 22 21 25 25 C 1.37971 * 119.86291 * 179.97438 * 24 23 22 26 26 C 1.38353 * 120.13939 * 0.02562 * 25 24 23 27 27 C 1.38354 * 120.27343 * 359.97438 * 26 25 24 28 28 C 1.37971 * 120.13902 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47472 * 299.99839 * 1 2 3 31 31 H 1.09001 * 109.46746 * 60.00081 * 1 2 3 32 32 H 1.09001 * 109.47287 * 59.99971 * 5 3 2 33 33 H 1.09006 * 109.47247 * 299.99942 * 5 3 2 34 34 H 1.09010 * 109.47047 * 60.00365 * 6 5 3 35 35 H 1.08995 * 109.47392 * 300.00222 * 6 5 3 36 36 H 0.96996 * 119.99948 * 180.02562 * 11 10 8 37 37 H 1.07994 * 125.11659 * 179.69394 * 20 19 18 38 38 H 1.08000 * 120.06656 * 0.02562 * 24 23 22 39 39 H 1.08005 * 119.92787 * 179.72643 * 25 24 23 40 40 H 1.07997 * 119.86036 * 180.02562 * 26 25 24 41 41 H 1.07998 * 119.92727 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.06744 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 0.0010 8 6 6.1453 2.8554 1.1862 9 1 7.0498 2.2779 1.3066 10 6 5.6738 3.6362 2.2358 11 7 6.1834 3.4968 3.4386 12 14 4.3159 4.8834 1.9355 13 1 2.9975 4.2528 2.1992 14 1 4.5001 6.0439 2.8435 15 1 4.3707 5.3448 0.5251 16 6 6.1370 2.8531 -1.1657 17 8 5.5286 2.9192 -2.2186 18 6 7.5987 2.8110 -1.1673 19 8 8.4127 2.8420 -0.0859 20 6 9.6764 2.7905 -0.5196 21 7 9.6931 2.7229 -1.8213 22 6 8.4272 2.7291 -2.2772 23 6 7.9999 2.6665 -3.6936 24 6 8.6551 3.4333 -4.6574 25 6 8.2526 3.3702 -5.9756 26 6 7.2013 2.5491 -6.3424 27 6 6.5474 1.7862 -5.3912 28 6 6.9405 1.8405 -4.0698 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7806 -0.8891 33 1 3.9557 0.7809 0.8909 34 1 3.6101 3.2367 0.8894 35 1 3.6108 3.2356 -0.8906 36 1 5.8542 4.0411 4.1708 37 1 10.5514 2.8035 0.1133 38 1 9.4763 4.0743 -4.3724 39 1 8.7563 3.9667 -6.7220 40 1 6.8902 2.5028 -7.3755 41 1 5.7277 1.1468 -5.6838 42 1 6.4296 1.2442 -3.3283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871345392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:12 Heat of formation + Delta-G solvation = -49.285569 kcal Electronic energy + Delta-G solvation = -30224.701143 eV Core-core repulsion = 25944.788380 eV Total energy + Delta-G solvation = -4279.912762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.67645 -40.33807 -38.99904 -38.57587 -36.45749 -35.50195 -34.37495 -32.53506 -31.56283 -31.08041 -30.57879 -28.81413 -27.66998 -25.25918 -24.83953 -23.14501 -22.86492 -21.83587 -20.86001 -20.44065 -19.50018 -18.23698 -17.53465 -16.94858 -16.67503 -16.49069 -16.20911 -15.99933 -15.82188 -15.24335 -14.87623 -14.51112 -14.31996 -14.07423 -13.92689 -13.53684 -13.27951 -13.10670 -13.02993 -12.82924 -12.58269 -12.45445 -12.32197 -12.13901 -11.85802 -11.36654 -11.07276 -11.00926 -10.94675 -10.74169 -10.70097 -10.49752 -10.33820 -10.12626 -9.99089 -9.58901 -9.14007 -8.88392 -8.53485 -8.16924 -7.84191 -6.68121 -4.37447 1.13162 1.77448 1.82842 2.39201 2.77588 2.94390 3.01023 3.12503 3.18345 3.21770 3.81504 3.92648 4.10612 4.16445 4.42868 4.74003 4.98860 5.09806 5.10435 5.16196 5.21293 5.29055 5.32792 5.38002 5.43194 5.50349 5.57318 5.77332 5.85568 5.88862 6.00860 6.10219 6.20123 6.22008 6.33501 6.37951 6.50774 6.54160 6.78747 6.84831 6.94373 7.03736 7.29110 7.75722 7.90000 8.02043 8.07730 8.64045 8.98226 9.25282 10.39866 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.004599 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.140409 B = 6086.911030 C = 8225.956476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.509 6.509 5 C -0.123 4.123 6 C 0.112 3.888 7 N -0.442 5.442 8 C -0.349 4.349 9 H 0.122 0.878 10 C 0.074 3.926 11 N -0.848 5.848 12 Si 0.875 3.125 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.259 1.259 16 C 0.550 3.450 17 O -0.561 6.561 18 C -0.034 4.034 19 O -0.144 6.144 20 C 0.161 3.839 21 N -0.488 5.488 22 C 0.062 3.938 23 C -0.004 4.004 24 C -0.091 4.091 25 C -0.135 4.135 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.052 4.052 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.280 0.720 37 H 0.245 0.755 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -5.136 -8.411 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.397 6.397 5 C -0.162 4.162 6 C -0.011 4.011 7 N -0.160 5.160 8 C -0.476 4.476 9 H 0.139 0.861 10 C -0.136 4.136 11 N -0.482 5.482 12 Si 0.702 3.298 13 H -0.192 1.192 14 H -0.211 1.211 15 H -0.183 1.183 16 C 0.339 3.661 17 O -0.446 6.446 18 C -0.092 4.092 19 O -0.027 6.027 20 C -0.064 4.064 21 N -0.216 5.216 22 C -0.062 4.062 23 C -0.005 4.005 24 C -0.110 4.110 25 C -0.153 4.153 26 C -0.136 4.136 27 C -0.146 4.146 28 C -0.071 4.071 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.261 0.739 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.134 -4.769 -8.922 10.179 hybrid contribution -1.262 0.833 0.868 1.743 sum -2.395 -3.936 -8.053 9.278 Atomic orbital electron populations 1.23222 0.76887 1.03345 1.02466 1.86529 1.23074 1.33824 1.84371 1.23884 0.92167 0.81120 0.71742 1.90658 1.67333 1.36324 1.45368 1.21758 0.86532 1.01195 1.06692 1.21525 0.82189 0.93727 1.03676 1.43617 1.04199 1.62261 1.05960 1.19385 1.10888 1.29241 0.88055 0.86083 1.25395 0.97362 0.95970 0.94840 1.69625 1.41091 1.37679 0.99789 0.86963 0.81566 0.81451 0.79801 1.19186 1.21106 1.18278 1.16603 0.82782 0.82151 0.84534 1.90811 1.66697 1.56107 1.30983 1.23495 0.92667 1.09003 0.83991 1.85062 1.16670 1.66465 1.34502 1.28052 0.87401 1.00015 0.90951 1.70338 1.22378 1.19009 1.09912 1.20395 0.87486 1.04981 0.93354 1.17613 0.96585 0.98173 0.88149 1.21118 0.99083 0.98360 0.92442 1.20927 0.98341 1.00287 0.95754 1.21130 0.96354 0.97019 0.99103 1.20965 1.00212 1.00502 0.92952 1.21173 0.93618 0.96498 0.95765 0.88329 0.92019 0.92020 0.87337 0.86446 0.90405 0.89334 0.90963 0.73913 0.86135 0.86345 0.86563 0.86222 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.30 10.57 -39.25 -0.41 -5.71 16 3 C 0.47 8.05 7.96 36.00 0.29 8.34 16 4 O -0.51 -10.05 15.73 -18.75 -0.29 -10.34 16 5 C -0.12 -2.15 6.13 -27.89 -0.17 -2.32 16 6 C 0.11 2.35 3.40 -4.04 -0.01 2.34 16 7 N -0.44 -10.03 2.15 -116.46 -0.25 -10.28 16 8 C -0.35 -8.52 8.55 -15.04 -0.13 -8.64 16 9 H 0.12 3.10 6.07 -52.49 -0.32 2.78 16 10 C 0.07 1.86 5.43 -17.45 -0.09 1.76 16 11 N -0.85 -22.02 13.95 55.50 0.77 -21.25 16 12 Si 0.87 20.21 24.70 -169.99 -4.20 16.01 16 13 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.26 -6.16 7.02 56.52 0.40 -5.76 16 16 C 0.55 12.35 7.36 -13.05 -0.10 12.25 16 17 O -0.56 -12.78 12.73 5.11 0.07 -12.71 16 18 C -0.03 -0.72 6.88 -36.18 -0.25 -0.97 16 19 O -0.14 -2.91 7.71 4.19 0.03 -2.87 16 20 C 0.16 2.61 13.16 52.14 0.69 3.30 16 21 N -0.49 -8.82 11.28 -10.99 -0.12 -8.94 16 22 C 0.06 1.22 6.65 -82.45 -0.55 0.67 16 23 C 0.00 -0.08 5.45 -104.92 -0.57 -0.65 16 24 C -0.09 -1.48 9.79 -39.21 -0.38 -1.86 16 25 C -0.14 -1.86 10.03 -39.64 -0.40 -2.26 16 26 C -0.12 -1.57 10.04 -39.50 -0.40 -1.97 16 27 C -0.13 -1.90 10.03 -39.64 -0.40 -2.29 16 28 C -0.05 -0.90 7.57 -39.21 -0.30 -1.20 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 33 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 34 H 0.08 1.75 2.92 -51.92 -0.15 1.60 16 35 H 0.09 1.91 7.31 -51.93 -0.38 1.53 16 36 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.25 2.58 8.06 -52.49 -0.42 2.16 16 38 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.13 2.28 6.81 -52.49 -0.36 1.92 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -30.66 361.03 -5.27 -35.93 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.60 Total: 6.80 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -1.71 Total: 7.93 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.40 Total: -40.47 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.61 Total: -31.64 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.20 Total: 16.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.66 -5.27 -35.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.355 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds