Wall clock time and date at job start Wed Apr 1 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.46926 * 2 1 4 4 C 1.46495 * 119.99942 * 85.00055 * 3 2 1 5 5 C 1.50702 * 109.47574 * 274.99613 * 4 3 2 6 6 H 1.08002 * 119.99441 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00075 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00481 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 179.73007 * 7 5 4 10 10 H 1.48494 * 109.47225 * 180.27306 * 9 7 5 11 11 H 1.48506 * 109.46866 * 300.27330 * 9 7 5 12 12 H 1.48498 * 109.47306 * 60.26614 * 9 7 5 13 13 S 1.65601 * 119.99925 * 264.99915 * 3 2 1 14 14 O 1.42103 * 106.40358 * 23.54303 * 13 3 2 15 15 O 1.42100 * 106.39948 * 156.46094 * 13 3 2 16 16 N 1.65597 * 107.21916 * 270.00550 * 13 3 2 17 17 C 1.47014 * 125.65228 * 90.02263 * 16 13 3 18 18 C 1.54329 * 107.27355 * 181.02314 * 17 16 13 19 19 C 1.55151 * 102.93851 * 22.19433 * 18 17 16 20 20 C 1.52998 * 111.00818 * 82.57556 * 19 18 17 21 21 C 1.53005 * 111.00067 * 206.42543 * 19 18 17 22 22 F 1.39891 * 109.47366 * 58.54911 * 21 19 18 23 23 F 1.39908 * 109.47001 * 178.55047 * 21 19 18 24 24 F 1.39900 * 109.47101 * 298.54618 * 21 19 18 25 25 C 1.47430 * 125.64273 * 269.71778 * 16 13 3 26 26 H 1.09000 * 109.46923 * 299.99843 * 1 2 3 27 27 H 1.08996 * 109.47337 * 59.99767 * 1 2 3 28 28 H 1.08995 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46923 * 240.00157 * 2 1 3 30 30 H 1.08997 * 109.47018 * 119.99792 * 2 1 3 31 31 H 1.09009 * 109.47230 * 154.99954 * 4 3 2 32 32 H 1.08998 * 109.47557 * 35.00445 * 4 3 2 33 33 H 0.97005 * 119.99656 * 359.72741 * 8 7 5 34 34 H 1.09002 * 109.88725 * 300.44372 * 17 16 13 35 35 H 1.08997 * 109.88577 * 61.60655 * 17 16 13 36 36 H 1.09000 * 110.71850 * 140.55842 * 18 17 16 37 37 H 1.08998 * 110.71737 * 263.65114 * 18 17 16 38 38 H 1.08998 * 109.47382 * 61.44470 * 20 19 18 39 39 H 1.09000 * 109.47201 * 181.45348 * 20 19 18 40 40 H 1.09000 * 109.46647 * 301.45036 * 20 19 18 41 41 H 1.09000 * 110.36413 * 274.74189 * 25 16 13 42 42 H 1.08999 * 110.37158 * 37.06853 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8361 2.7289 1.6356 6 1 -0.0227 2.5942 0.9947 7 6 0.7228 3.4681 2.7939 8 7 1.7684 3.6317 3.5746 9 14 -0.9143 4.2432 3.2508 10 1 -0.7710 4.9855 4.5289 11 1 -1.3346 5.1805 2.1784 12 1 -1.9388 3.1798 3.4081 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4415 -2.4448 15 8 2.3057 3.5186 -1.1998 16 7 4.0144 1.8136 -1.7138 17 6 4.5476 0.6625 -2.4568 18 6 6.0862 0.7818 -2.4441 19 6 6.3543 1.6871 -1.2130 20 6 6.3498 0.8697 0.0804 21 6 7.6700 2.4521 -1.3710 22 9 7.6200 3.2310 -2.5319 23 9 7.8635 3.2814 -0.2609 24 9 8.7295 1.5433 -1.4644 25 6 5.1420 2.6533 -1.2700 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9080 2.8919 1.1513 32 1 2.4691 1.4183 2.0480 33 1 2.6184 3.2288 3.3376 34 1 4.2436 -0.2650 -1.9715 35 1 4.1827 0.6828 -3.4837 36 1 6.5477 -0.1967 -2.3111 37 1 6.4439 1.2542 -3.3589 38 1 7.1440 0.1242 0.0419 39 1 6.5144 1.5327 0.9298 40 1 5.3874 0.3699 0.1908 41 1 5.3248 3.4531 -1.9876 42 1 4.9408 3.0676 -0.2821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872588495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:38 Heat of formation + Delta-G solvation = -232.401026 kcal Electronic energy + Delta-G solvation = -30897.213384 eV Core-core repulsion = 26202.947351 eV Total energy + Delta-G solvation = -4694.266033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.117 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.29834 -47.78913 -47.74140 -39.24867 -36.81146 -36.26453 -35.31630 -33.02023 -32.86959 -29.95279 -29.76390 -27.21046 -26.36871 -25.64971 -22.83747 -22.69235 -22.00055 -20.56953 -19.04427 -18.55622 -18.30973 -17.91478 -17.21300 -17.03794 -16.64250 -15.72541 -15.18870 -14.92516 -14.61744 -14.29353 -14.20339 -14.04957 -13.92783 -13.91670 -13.84348 -13.71946 -13.59548 -13.39092 -13.19605 -12.75928 -12.54586 -12.43368 -12.23418 -11.99021 -11.79333 -11.71879 -11.44389 -11.39917 -11.37960 -11.24233 -11.20430 -11.03402 -10.86294 -10.53991 -10.27104 -10.07036 -9.37296 -9.08880 -8.41032 -8.04231 -6.41548 -4.13551 0.93030 2.48404 3.26265 3.42934 3.47601 3.48665 3.55175 3.64250 3.78743 3.94378 4.28034 4.36607 4.51310 4.52257 4.71165 4.88332 4.94886 5.18021 5.30309 5.33578 5.35411 5.43803 5.48263 5.53046 5.58604 5.67788 5.72478 5.79198 5.92420 5.98211 6.05478 6.24089 6.30004 6.57960 6.80464 6.91218 7.13108 7.40128 7.97132 8.41502 8.76818 9.54711 10.95920 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004221 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.095669 B = 6631.315633 C = 7582.599778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.986 5.986 4 C 0.249 3.751 5 C -0.605 4.605 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.287 1.287 13 S 2.790 3.210 14 O -0.985 6.985 15 O -0.955 6.955 16 N -1.021 6.021 17 C 0.125 3.875 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.141 4.141 21 C 0.466 3.534 22 F -0.180 7.180 23 F -0.177 7.177 24 F -0.181 7.181 25 C 0.136 3.864 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 -9.033 -10.228 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.828 5.828 4 C 0.127 3.873 5 C -0.644 4.644 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.545 5.545 9 Si 0.894 3.106 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.214 1.214 13 S 2.800 3.200 14 O -0.969 6.969 15 O -0.938 6.938 16 N -0.858 5.858 17 C 0.000 4.000 18 C -0.155 4.155 19 C -0.127 4.127 20 C -0.198 4.198 21 C 0.411 3.589 22 F -0.162 7.162 23 F -0.158 7.158 24 F -0.162 7.162 25 C 0.010 3.990 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.363 -7.556 -9.624 16.034 hybrid contribution 1.282 -0.994 -0.945 1.877 sum 11.645 -8.549 -10.569 17.900 Atomic orbital electron populations 1.22251 0.96095 1.00942 1.03821 1.20968 0.95122 0.81984 1.00949 1.57726 1.77909 1.23161 1.24037 1.19107 0.98006 0.90501 0.79698 1.22301 0.96310 1.35685 1.10101 0.92450 1.25768 1.04297 0.95139 0.93054 1.70835 1.01519 1.43207 1.38955 0.83576 0.74124 0.76475 0.76381 1.20696 1.21244 1.21387 1.01828 0.71533 0.73671 0.72973 1.93547 1.69244 1.76509 1.57574 1.93642 1.84671 1.29957 1.85563 1.59507 1.23740 1.34167 1.68434 1.21616 0.92623 0.88725 0.97067 1.22779 0.96322 1.00317 0.96113 1.23133 0.90911 0.97845 1.00834 1.21805 1.04334 0.99960 0.93701 1.20212 0.86807 0.78062 0.73787 1.93173 1.96605 1.76344 1.50047 1.93212 1.95896 1.73462 1.53266 1.93171 1.60114 1.67013 1.95942 1.21951 0.83401 0.91762 1.01922 0.90148 0.92799 0.92972 0.92166 0.91187 0.95808 0.95791 0.92377 0.91206 0.90515 0.88685 0.89405 0.91029 0.90612 0.89682 0.90127 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.83 37.16 0.37 -2.60 16 2 C 0.14 2.24 6.09 -4.04 -0.02 2.22 16 3 N -0.99 -19.37 2.86 -115.66 -0.33 -19.70 16 4 C 0.25 5.86 4.43 -5.20 -0.02 5.84 16 5 C -0.60 -16.40 8.41 -34.44 -0.29 -16.69 16 6 H 0.06 1.58 6.89 -52.49 -0.36 1.21 16 7 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 8 N -0.91 -26.55 13.65 55.43 0.76 -25.80 16 9 Si 1.07 25.14 29.90 -169.99 -5.08 20.05 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 S 2.79 53.91 6.26 -107.50 -0.67 53.23 16 14 O -0.98 -19.80 16.69 -57.17 -0.95 -20.76 16 15 O -0.95 -22.52 16.69 -57.17 -0.95 -23.47 16 16 N -1.02 -14.73 3.74 -111.29 -0.42 -15.15 16 17 C 0.13 1.33 6.65 -3.07 -0.02 1.31 16 18 C -0.12 -1.00 5.70 -24.90 -0.14 -1.14 16 19 C -0.12 -1.30 0.47 -152.24 -0.07 -1.37 16 20 C -0.14 -1.37 8.35 37.16 0.31 -1.06 16 21 C 0.47 5.07 2.33 37.16 0.09 5.16 16 22 F -0.18 -2.05 15.74 2.25 0.04 -2.02 16 23 F -0.18 -2.16 16.68 2.25 0.04 -2.12 16 24 F -0.18 -1.88 16.86 2.25 0.04 -1.84 16 25 C 0.14 1.82 5.80 -2.41 -0.01 1.81 16 26 H 0.08 1.58 6.59 -51.93 -0.34 1.23 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.84 7.61 -51.93 -0.40 0.45 16 30 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 31 H 0.02 0.59 7.48 -51.92 -0.39 0.20 16 32 H 0.02 0.57 7.87 -51.93 -0.41 0.16 16 33 H 0.27 7.58 7.22 -40.82 -0.29 7.29 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.09 0.70 7.51 -51.93 -0.39 0.31 16 38 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 39 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 40 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 41 H 0.08 1.05 7.30 -51.93 -0.38 0.67 16 42 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -32.89 362.74 -7.92 -40.82 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.93 Total: -2.72 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 0.08 Total: -6.00 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.01 Total: -60.65 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.91 Total: -44.23 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.11 Total: -5.98 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.05 kcal Atomic # 16 Polarization: 53.91 SS G_CDS: -0.67 Total: 53.23 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.89 -7.92 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872588495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.583 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds