Wall clock time and date at job start Wed Apr 1 2020 02:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.46926 * 2 1 4 4 C 1.46495 * 119.99942 * 85.00055 * 3 2 1 5 5 C 1.50702 * 109.47574 * 274.99613 * 4 3 2 6 6 H 1.08002 * 119.99441 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00075 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00481 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 179.73007 * 7 5 4 10 10 H 1.48494 * 109.47225 * 180.27306 * 9 7 5 11 11 H 1.48506 * 109.46866 * 300.27330 * 9 7 5 12 12 H 1.48498 * 109.47306 * 60.26614 * 9 7 5 13 13 S 1.65601 * 119.99925 * 264.99915 * 3 2 1 14 14 O 1.42103 * 106.40358 * 23.54303 * 13 3 2 15 15 O 1.42100 * 106.39948 * 156.46094 * 13 3 2 16 16 N 1.65597 * 107.21916 * 270.00550 * 13 3 2 17 17 C 1.47014 * 125.65228 * 90.02263 * 16 13 3 18 18 C 1.54329 * 107.27355 * 181.02314 * 17 16 13 19 19 C 1.55151 * 102.93851 * 22.19433 * 18 17 16 20 20 C 1.52998 * 111.00818 * 82.57556 * 19 18 17 21 21 C 1.53005 * 111.00067 * 206.42543 * 19 18 17 22 22 F 1.39891 * 109.47366 * 58.54911 * 21 19 18 23 23 F 1.39908 * 109.47001 * 178.55047 * 21 19 18 24 24 F 1.39900 * 109.47101 * 298.54618 * 21 19 18 25 25 C 1.47430 * 125.64273 * 269.71778 * 16 13 3 26 26 H 1.09000 * 109.46923 * 299.99843 * 1 2 3 27 27 H 1.08996 * 109.47337 * 59.99767 * 1 2 3 28 28 H 1.08995 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46923 * 240.00157 * 2 1 3 30 30 H 1.08997 * 109.47018 * 119.99792 * 2 1 3 31 31 H 1.09009 * 109.47230 * 154.99954 * 4 3 2 32 32 H 1.08998 * 109.47557 * 35.00445 * 4 3 2 33 33 H 0.97005 * 119.99656 * 359.72741 * 8 7 5 34 34 H 1.09002 * 109.88725 * 300.44372 * 17 16 13 35 35 H 1.08997 * 109.88577 * 61.60655 * 17 16 13 36 36 H 1.09000 * 110.71850 * 140.55842 * 18 17 16 37 37 H 1.08998 * 110.71737 * 263.65114 * 18 17 16 38 38 H 1.08998 * 109.47382 * 61.44470 * 20 19 18 39 39 H 1.09000 * 109.47201 * 181.45348 * 20 19 18 40 40 H 1.09000 * 109.46647 * 301.45036 * 20 19 18 41 41 H 1.09000 * 110.36413 * 274.74189 * 25 16 13 42 42 H 1.08999 * 110.37158 * 37.06853 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 0.8361 2.7289 1.6356 6 1 -0.0227 2.5942 0.9947 7 6 0.7228 3.4681 2.7939 8 7 1.7684 3.6317 3.5746 9 14 -0.9143 4.2432 3.2508 10 1 -0.7710 4.9855 4.5289 11 1 -1.3346 5.1805 2.1784 12 1 -1.9388 3.1798 3.4081 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4415 -2.4448 15 8 2.3057 3.5186 -1.1998 16 7 4.0144 1.8136 -1.7138 17 6 4.5476 0.6625 -2.4568 18 6 6.0862 0.7818 -2.4441 19 6 6.3543 1.6871 -1.2130 20 6 6.3498 0.8697 0.0804 21 6 7.6700 2.4521 -1.3710 22 9 7.6200 3.2310 -2.5319 23 9 7.8635 3.2814 -0.2609 24 9 8.7295 1.5433 -1.4644 25 6 5.1420 2.6533 -1.2700 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9080 2.8919 1.1513 32 1 2.4691 1.4183 2.0480 33 1 2.6184 3.2288 3.3376 34 1 4.2436 -0.2650 -1.9715 35 1 4.1827 0.6828 -3.4837 36 1 6.5477 -0.1967 -2.3111 37 1 6.4439 1.2542 -3.3589 38 1 7.1440 0.1242 0.0419 39 1 6.5144 1.5327 0.9298 40 1 5.3874 0.3699 0.1908 41 1 5.3248 3.4531 -1.9876 42 1 4.9408 3.0676 -0.2821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872588495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:38 Heat of formation + Delta-G solvation = -254.711587 kcal Electronic energy + Delta-G solvation = -30898.180843 eV Core-core repulsion = 26202.947351 eV Total energy + Delta-G solvation = -4695.233492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.18203 -48.67344 -48.63177 -40.18646 -38.44230 -37.89165 -36.97422 -34.87862 -34.01166 -31.41939 -30.72994 -28.30058 -28.00939 -26.64028 -24.77960 -23.76271 -23.34773 -21.44777 -20.30087 -19.49075 -19.42321 -19.20975 -18.79336 -18.58983 -17.90722 -17.14688 -16.34504 -15.82047 -15.79758 -15.60417 -15.51397 -15.31387 -15.09313 -14.94372 -14.88517 -14.79951 -14.73835 -14.65659 -14.64798 -13.99615 -13.67776 -13.60786 -13.52887 -13.44081 -13.30523 -13.28084 -13.11437 -12.81888 -12.68828 -12.55885 -12.30943 -12.20132 -12.10624 -11.97463 -11.97086 -11.68225 -11.22319 -10.53844 -10.20973 -9.80087 -8.60797 -6.33694 -0.56638 1.52067 1.57415 1.59621 1.78310 1.93877 2.41654 2.56634 2.60767 2.66995 2.93602 3.16283 3.21450 3.45392 3.54372 3.69863 3.84013 4.03033 4.13022 4.31356 4.38828 4.43664 4.47822 4.56095 4.63104 4.66152 4.73033 4.81375 4.87351 4.89478 4.92368 4.99720 5.01134 5.17530 5.24397 5.36402 5.50658 5.79419 5.91040 6.26170 6.58822 7.40648 8.76740 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004221 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.095669 B = 6631.315633 C = 7582.599778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.126 3.874 3 N -0.990 5.990 4 C 0.263 3.737 5 C -0.613 4.613 6 H 0.047 0.953 7 C -0.027 4.027 8 N -0.933 5.933 9 Si 1.103 2.897 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.265 1.265 13 S 2.805 3.195 14 O -0.994 6.994 15 O -1.007 7.007 16 N -1.016 6.016 17 C 0.113 3.887 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.141 4.141 21 C 0.468 3.532 22 F -0.183 7.183 23 F -0.188 7.188 24 F -0.173 7.173 25 C 0.127 3.873 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.007 0.993 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.472 -11.278 -11.223 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.001 3.999 3 N -0.831 5.831 4 C 0.139 3.861 5 C -0.652 4.652 6 H 0.066 0.934 7 C -0.226 4.226 8 N -0.571 5.571 9 Si 0.926 3.074 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.190 1.190 13 S 2.816 3.184 14 O -0.978 6.978 15 O -0.991 6.991 16 N -0.857 5.857 17 C -0.011 4.011 18 C -0.144 4.144 19 C -0.120 4.120 20 C -0.198 4.198 21 C 0.413 3.587 22 F -0.165 7.165 23 F -0.170 7.170 24 F -0.155 7.155 25 C 0.001 3.999 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.060 -9.836 -10.641 18.229 hybrid contribution 1.131 -0.343 -0.727 1.388 sum 12.191 -10.180 -11.368 19.531 Atomic orbital electron populations 1.22234 0.96782 1.02613 1.01436 1.21296 0.94666 0.80543 1.03373 1.57623 1.78792 1.24241 1.22466 1.18700 0.95796 0.90265 0.81344 1.22648 0.97472 1.35383 1.09690 0.93425 1.26999 1.06495 0.95625 0.93461 1.70930 1.01795 1.44566 1.39810 0.83105 0.71615 0.76519 0.76168 1.20536 1.20906 1.18993 1.01036 0.72339 0.72409 0.72639 1.93522 1.70380 1.76303 1.57586 1.93570 1.86021 1.33346 1.86184 1.59006 1.22331 1.35739 1.68586 1.22027 0.94064 0.87862 0.97173 1.22854 0.94699 1.01585 0.95293 1.23083 0.89107 0.97342 1.02457 1.21834 1.05127 1.00084 0.92726 1.20236 0.87122 0.77939 0.73356 1.93169 1.96639 1.76525 1.50156 1.93196 1.95977 1.73891 1.53891 1.93185 1.59776 1.66631 1.95879 1.22040 0.84433 0.92644 1.00805 0.93146 0.94437 0.89329 0.88887 0.89500 0.97563 0.95619 0.93138 0.89085 0.89782 0.85352 0.88492 0.88538 0.91951 0.89892 0.90130 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 9.83 71.99 0.71 -4.99 16 2 C 0.13 3.92 6.09 86.38 0.53 4.45 16 3 N -0.99 -38.65 2.86 -519.83 -1.48 -40.14 16 4 C 0.26 12.62 4.43 85.63 0.38 13.00 16 5 C -0.61 -33.88 8.41 25.60 0.22 -33.66 16 6 H 0.05 2.67 6.89 -2.91 -0.02 2.65 16 7 C -0.03 -1.52 5.46 84.65 0.46 -1.06 16 8 N -0.93 -55.57 13.65 21.45 0.29 -55.28 16 9 Si 1.10 50.89 29.90 68.60 2.05 52.94 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 S 2.81 108.37 6.26 -56.49 -0.35 108.02 16 14 O -0.99 -39.06 16.69 -128.00 -2.14 -41.20 16 15 O -1.01 -49.16 16.69 -128.00 -2.14 -51.29 16 16 N -1.02 -28.31 3.74 -506.01 -1.89 -30.20 16 17 C 0.11 2.06 6.65 86.73 0.58 2.64 16 18 C -0.11 -1.43 5.70 31.78 0.18 -1.25 16 19 C -0.12 -2.22 0.47 -50.71 -0.02 -2.25 16 20 C -0.14 -2.45 8.35 71.98 0.60 -1.85 16 21 C 0.47 9.44 2.33 71.98 0.17 9.61 16 22 F -0.18 -3.92 15.74 44.97 0.71 -3.21 16 23 F -0.19 -4.51 16.68 44.97 0.75 -3.76 16 24 F -0.17 -3.14 16.86 44.97 0.76 -2.38 16 25 C 0.13 3.38 5.80 86.93 0.50 3.88 16 26 H 0.05 1.96 6.59 -2.39 -0.02 1.95 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.09 2.30 7.61 -2.39 -0.02 2.28 16 30 H 0.09 2.42 8.00 -2.39 -0.02 2.40 16 31 H 0.01 0.33 7.48 -2.38 -0.02 0.32 16 32 H 0.03 1.23 7.87 -2.39 -0.02 1.21 16 33 H 0.26 15.21 7.22 -92.70 -0.67 14.54 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.13 0.97 8.05 -2.39 -0.02 0.95 16 37 H 0.10 1.19 7.51 -2.39 -0.02 1.17 16 38 H 0.10 1.20 8.02 -2.39 -0.02 1.18 16 39 H 0.06 1.25 7.77 -2.39 -0.02 1.24 16 40 H 0.08 1.49 7.89 -2.39 -0.02 1.48 16 41 H 0.08 2.11 7.30 -2.39 -0.02 2.10 16 42 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 Total: -1.00 -72.67 362.74 1.99 -70.69 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.13 Total: 7.28 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 4.30 Total: -11.48 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -3.08 Total: -125.61 kcal Atomic # 8 Polarization: -88.22 SS G_CDS: -4.27 Total: -92.49 kcal Atomic # 9 Polarization: -11.56 SS G_CDS: 2.22 Total: -9.35 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Atomic # 16 Polarization: 108.37 SS G_CDS: -0.35 Total: 108.02 kcal Total: -72.67 1.99 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872588495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.026 kcal (2) G-P(sol) polarization free energy of solvation -72.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds