Wall clock time and date at job start Wed Apr 1 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00112 * 2 1 4 4 H 1.48504 * 109.46996 * 270.00205 * 3 2 1 5 5 H 1.48504 * 109.47114 * 29.99956 * 3 2 1 6 6 H 1.48500 * 109.47186 * 150.00375 * 3 2 1 7 7 C 1.37877 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00273 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00220 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99821 * 327.90442 * 10 9 7 12 12 C 1.53003 * 109.47467 * 264.31836 * 11 10 9 13 13 C 1.53004 * 117.49915 * 244.29579 * 12 11 10 14 14 C 1.52994 * 117.49884 * 175.63204 * 12 11 10 15 15 C 1.34776 * 120.00098 * 147.90851 * 10 9 7 16 16 O 1.21627 * 120.00077 * 186.86134 * 15 10 9 17 17 C 1.47262 * 120.00070 * 6.86532 * 15 10 9 18 18 C 1.38296 * 120.39750 * 123.89725 * 17 15 10 19 19 C 1.41551 * 119.09829 * 179.97438 * 18 17 15 20 20 C 1.40393 * 120.23848 * 180.02562 * 19 18 17 21 21 C 1.37586 * 119.74686 * 180.30291 * 20 19 18 22 22 F 1.35105 * 119.81923 * 179.69644 * 21 20 19 23 23 C 1.39126 * 120.36426 * 359.43865 * 21 20 19 24 24 C 1.37700 * 120.63153 * 0.56076 * 23 21 20 25 25 C 1.39258 * 120.10339 * 359.72476 * 24 23 21 26 26 N 1.37957 * 120.01638 * 179.97438 * 25 24 23 27 27 H 0.97008 * 119.52907 * 0.02562 * 26 25 24 28 28 C 1.34600 * 120.94035 * 179.97438 * 26 25 24 29 29 O 1.21782 * 119.92083 * 180.02562 * 28 26 25 30 30 H 0.97006 * 120.00235 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.47111 * 59.99321 * 9 7 2 32 32 H 1.09002 * 109.46614 * 299.99811 * 9 7 2 33 33 H 1.08994 * 109.47096 * 24.32121 * 11 10 9 34 34 H 1.09004 * 109.47177 * 144.31800 * 11 10 9 35 35 H 1.09001 * 115.54860 * 29.95608 * 12 11 10 36 36 H 1.08999 * 117.49687 * 359.97438 * 13 12 11 37 37 H 1.08994 * 117.49825 * 145.01924 * 13 12 11 38 38 H 1.09010 * 117.49490 * 214.97536 * 14 12 11 39 39 H 1.08999 * 117.50188 * 359.97438 * 14 12 11 40 40 H 1.08002 * 120.45163 * 0.07738 * 18 17 15 41 41 H 1.07995 * 120.12661 * 0.02562 * 20 19 18 42 42 H 1.07993 * 119.68745 * 180.26710 * 23 21 20 43 43 H 1.08001 * 119.94528 * 179.74603 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 3.2303 -3.6243 0.6735 12 6 3.7792 -3.8320 2.0865 13 6 4.4068 -5.1899 2.4081 14 6 3.0415 -4.8194 2.9929 15 6 5.1569 -2.8809 -0.6198 16 8 5.5002 -4.0427 -0.7285 17 6 6.0057 -1.8083 -1.1652 18 6 7.3262 -1.6920 -0.7709 19 6 8.1174 -0.6509 -1.3130 20 6 9.4607 -0.5110 -0.9299 21 6 10.2188 0.5083 -1.4584 22 9 11.5099 0.6480 -1.0860 23 6 9.6645 1.3928 -2.3782 24 6 8.3486 1.2697 -2.7648 25 6 7.5588 0.2499 -2.2399 26 7 6.2406 0.1286 -2.6281 27 1 5.8707 0.7573 -3.2676 28 6 5.4606 -0.8502 -2.1329 29 8 4.2995 -0.9404 -2.4888 30 1 -0.4851 0.8401 0.0004 31 1 3.8745 -0.6808 0.8905 32 1 3.8751 -0.6797 -0.8895 33 1 2.1832 -3.3270 0.7306 34 1 3.3137 -4.5542 0.1110 35 1 4.2188 -2.9511 2.5543 36 1 4.4282 -5.9353 1.6131 37 1 5.2588 -5.2023 3.0877 38 1 2.9960 -4.5882 4.0572 39 1 2.1648 -5.3207 2.5828 40 1 7.7485 -2.3871 -0.0602 41 1 9.8962 -1.1982 -0.2196 42 1 10.2707 2.1863 -2.7894 43 1 7.9286 1.9650 -3.4766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879097505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:35 Heat of formation + Delta-G solvation = -16.256534 kcal Electronic energy + Delta-G solvation = -30110.070348 eV Core-core repulsion = 25843.962621 eV Total energy + Delta-G solvation = -4266.107726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.16655 -41.49845 -39.42651 -38.48418 -36.87170 -35.54835 -34.67485 -34.32192 -32.34646 -30.75912 -29.43916 -28.14415 -27.00977 -24.58849 -23.63305 -23.23552 -22.30866 -21.97221 -20.94215 -19.72710 -18.71583 -18.12761 -17.82205 -17.28306 -16.59060 -16.34047 -15.99536 -15.78517 -15.68839 -15.48441 -15.11401 -14.66425 -14.39610 -14.22146 -14.10786 -13.86386 -13.52743 -13.41363 -13.22115 -13.11671 -12.64911 -12.32126 -12.03752 -11.66596 -11.52488 -11.27632 -11.15411 -11.01871 -10.90408 -10.81687 -10.55577 -10.26481 -10.02224 -9.92273 -9.56226 -9.42298 -9.04737 -8.90379 -8.61805 -8.10034 -7.72487 -6.12571 -4.10154 -0.06719 0.67148 1.48655 2.54047 2.67579 3.15178 3.22180 3.27556 3.27939 3.52389 3.72406 3.88061 4.08655 4.20299 4.25676 4.34869 4.35447 4.55902 4.67935 4.93265 5.12971 5.19444 5.22776 5.28508 5.35595 5.41128 5.44799 5.48967 5.64055 5.79061 5.89143 5.90765 5.96290 6.23053 6.25741 6.28210 6.40767 6.46483 6.48453 6.71087 6.73917 6.80828 6.90191 7.31702 7.58666 7.92602 8.04053 8.55302 8.70542 8.89569 9.47069 10.99721 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009809 B = 0.004273 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.806094 B = 6550.569291 C = 8452.002744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.079 3.921 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.524 4.524 8 H 0.087 0.913 9 C 0.175 3.825 10 N -0.561 5.561 11 C 0.139 3.861 12 C -0.154 4.154 13 C -0.179 4.179 14 C -0.177 4.177 15 C 0.568 3.432 16 O -0.553 6.553 17 C -0.186 4.186 18 C 0.008 3.992 19 C -0.100 4.100 20 C -0.085 4.085 21 C 0.062 3.938 22 F -0.138 7.138 23 C -0.095 4.095 24 C -0.137 4.137 25 C 0.188 3.812 26 N -0.627 5.627 27 H 0.420 0.580 28 C 0.529 3.471 29 O -0.467 6.467 30 H 0.265 0.735 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.145 0.855 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.834 2.029 -1.809 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.124 4.124 3 Si 0.695 3.305 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.104 0.896 9 C 0.054 3.946 10 N -0.288 5.288 11 C 0.016 3.984 12 C -0.173 4.173 13 C -0.216 4.216 14 C -0.214 4.214 15 C 0.354 3.646 16 O -0.434 6.434 17 C -0.193 4.193 18 C -0.013 4.013 19 C -0.103 4.103 20 C -0.105 4.105 21 C 0.042 3.958 22 F -0.117 7.117 23 C -0.114 4.114 24 C -0.158 4.158 25 C 0.084 3.916 26 N -0.266 5.266 27 H 0.259 0.741 28 C 0.322 3.678 29 O -0.342 6.342 30 H 0.075 0.925 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 19.092 1.356 -1.938 19.238 hybrid contribution 0.462 1.518 -0.122 1.591 sum 19.554 2.874 -2.060 19.871 Atomic orbital electron populations 1.69870 1.06028 1.26962 1.50431 1.24737 0.94655 0.98587 0.94394 0.86958 0.80460 0.84345 0.78696 1.19889 1.20970 1.19248 1.21123 0.88437 0.95061 1.51557 0.89565 1.20646 0.97391 0.78309 0.98213 1.47778 1.19570 1.11375 1.50059 1.21168 0.97761 0.90548 0.88876 1.22685 1.03770 0.93495 0.97365 1.22990 0.95893 0.99387 1.03322 1.22893 0.95786 1.04022 0.98747 1.17424 0.81512 0.87000 0.78702 1.90745 1.73357 1.19167 1.60112 1.22207 0.95668 0.99289 1.02114 1.21803 0.91048 0.93683 0.94751 1.17320 0.94304 0.97979 1.00724 1.21209 0.92100 0.97458 0.99697 1.17376 0.79706 0.98572 1.00127 1.91520 1.34225 1.95527 1.90421 1.21086 0.95275 0.98814 0.96267 1.20640 0.93455 0.98651 1.03029 1.18073 0.84353 0.94897 0.94300 1.43523 1.09277 1.30979 1.42849 0.74106 1.18069 0.85775 0.80963 0.82973 1.91042 1.14530 1.71699 1.56934 0.92510 0.97308 0.91152 0.86976 0.91238 0.88152 0.88800 0.89716 0.89221 0.88795 0.83017 0.83231 0.83765 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.61 9.16 -34.44 -0.32 -14.92 16 8 H 0.09 2.55 5.78 -52.48 -0.30 2.25 16 9 C 0.17 4.24 4.15 -5.20 -0.02 4.22 16 10 N -0.56 -12.39 2.82 -176.39 -0.50 -12.89 16 11 C 0.14 2.85 5.45 -4.04 -0.02 2.83 16 12 C -0.15 -2.70 5.97 -90.62 -0.54 -3.24 16 13 C -0.18 -2.70 10.18 -26.69 -0.27 -2.97 16 14 C -0.18 -2.62 10.25 -26.69 -0.27 -2.89 16 15 C 0.57 11.81 6.85 -12.59 -0.09 11.72 16 16 O -0.55 -12.15 16.73 5.25 0.09 -12.06 16 17 C -0.19 -3.27 5.22 -102.80 -0.54 -3.81 16 18 C 0.01 0.11 9.57 -38.30 -0.37 -0.26 16 19 C -0.10 -1.11 5.74 -106.85 -0.61 -1.72 16 20 C -0.09 -0.75 9.74 -39.01 -0.38 -1.13 16 21 C 0.06 0.53 7.28 -39.49 -0.29 0.25 16 22 F -0.14 -1.27 17.26 2.25 0.04 -1.23 16 23 C -0.09 -0.68 9.99 -39.45 -0.39 -1.07 16 24 C -0.14 -1.05 9.85 -39.40 -0.39 -1.44 16 25 C 0.19 2.03 6.64 -83.76 -0.56 1.47 16 26 N -0.63 -8.14 5.30 -10.96 -0.06 -8.19 16 27 H 0.42 4.40 8.75 -40.82 -0.36 4.05 16 28 C 0.53 9.45 6.68 -12.93 -0.09 9.37 16 29 O -0.47 -10.35 14.60 5.12 0.07 -10.27 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.01 0.22 7.20 -51.92 -0.37 -0.15 16 32 H 0.07 1.73 2.35 -54.70 -0.13 1.60 16 33 H 0.11 2.51 5.23 -51.93 -0.27 2.23 16 34 H 0.07 1.41 7.24 -51.93 -0.38 1.04 16 35 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -34.51 364.78 -8.77 -43.28 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.78 Total: 6.95 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -5.24 Total: -1.45 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.22 Total: -47.21 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.16 Total: -22.33 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.51 -8.77 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879097505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.022 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds