Wall clock time and date at job start Wed Apr 1 2020 03:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99692 * 2 1 4 4 H 1.48503 * 109.46945 * 240.00249 * 3 2 1 5 5 H 1.48500 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46938 * 120.00509 * 3 2 1 7 7 C 1.37879 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45653 * 180.02562 * 9 7 2 11 11 C 1.53200 * 109.30975 * 181.37442 * 10 9 7 12 12 N 1.46924 * 108.77085 * 305.36516 * 11 10 9 13 13 C 1.34780 * 120.63161 * 233.58090 * 12 11 10 14 14 O 1.21630 * 119.99498 * 5.00905 * 13 12 11 15 15 C 1.47255 * 120.00437 * 185.00263 * 13 12 11 16 16 C 1.38308 * 120.39593 * 229.71617 * 15 13 12 17 17 C 1.41545 * 119.09329 * 180.02562 * 16 15 13 18 18 C 1.40398 * 120.23363 * 179.97438 * 17 16 15 19 19 C 1.37586 * 119.74726 * 179.78968 * 18 17 16 20 20 F 1.35100 * 119.82374 * 180.24445 * 19 18 17 21 21 C 1.39126 * 120.36591 * 0.49151 * 19 18 17 22 22 C 1.37701 * 120.62928 * 359.47902 * 21 19 18 23 23 C 1.39261 * 120.10569 * 0.27849 * 22 21 19 24 24 N 1.37955 * 120.01500 * 179.97438 * 23 22 21 25 25 H 0.97005 * 119.52880 * 359.97438 * 24 23 22 26 26 C 1.34600 * 120.93636 * 180.02562 * 24 23 22 27 27 O 1.21785 * 119.91824 * 179.97438 * 26 24 23 28 28 C 1.46930 * 118.73912 * 53.86557 * 12 11 10 29 29 C 1.53039 * 109.44834 * 300.06439 * 9 7 2 30 30 H 0.96997 * 120.00472 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.45480 * 60.03259 * 9 7 2 32 32 H 1.08999 * 109.49457 * 61.42403 * 10 9 7 33 33 H 1.08996 * 109.49816 * 301.32423 * 10 9 7 34 34 H 1.08998 * 109.58916 * 185.58141 * 11 10 9 35 35 H 1.08995 * 109.70293 * 65.22253 * 11 10 9 36 36 H 1.07997 * 120.45029 * 0.04100 * 16 15 13 37 37 H 1.08000 * 120.12556 * 0.02562 * 18 17 16 38 38 H 1.07997 * 119.68487 * 179.76220 * 21 19 18 39 39 H 1.08000 * 119.94547 * 180.26124 * 22 21 19 40 40 H 1.08994 * 109.59018 * 65.92273 * 28 12 11 41 41 H 1.09008 * 109.58415 * 186.35195 * 28 12 11 42 42 H 1.08995 * 109.49383 * 298.56965 * 29 9 7 43 43 H 1.09003 * 109.49906 * 58.66919 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6621 -0.0005 11 6 1.4769 -4.9867 -0.0352 12 7 0.5227 -5.0087 1.0818 13 6 0.5118 -6.0349 1.9555 14 8 1.3548 -6.9083 1.8782 15 6 -0.5204 -6.0986 3.0038 16 6 -0.1658 -6.3162 4.3228 17 6 -1.1806 -6.3729 5.3079 18 6 -0.8477 -6.5932 6.6539 19 6 -1.8418 -6.6421 7.6039 20 9 -1.5228 -6.8490 8.9003 21 6 -3.1743 -6.4848 7.2361 22 6 -3.5181 -6.2675 5.9206 23 6 -2.5301 -6.2088 4.9409 24 7 -2.8766 -5.9915 3.6234 25 1 -3.8108 -5.8809 3.3868 26 6 -1.9370 -5.9319 2.6615 27 8 -2.2638 -5.7397 1.5042 28 6 -0.4237 -3.8939 1.2246 29 6 0.3707 -2.5793 1.2487 30 1 -0.4851 0.8400 0.0004 31 1 0.6246 -2.5567 -0.8907 32 1 2.8559 -3.6191 0.9018 33 1 2.8883 -3.5914 -0.8782 34 1 2.1754 -5.8175 0.0645 35 1 0.9376 -5.0739 -0.9783 36 1 0.8712 -6.4409 4.5973 37 1 0.1851 -6.7199 6.9431 38 1 -3.9461 -6.5291 7.9903 39 1 -4.5557 -6.1427 5.6480 40 1 -1.1151 -3.8913 0.3820 41 1 -0.9796 -4.0036 2.1558 42 1 0.9987 -2.5467 2.1389 43 1 -0.3218 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879433264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:04 Heat of formation + Delta-G solvation = -71.851334 kcal Electronic energy + Delta-G solvation = -29845.649828 eV Core-core repulsion = 25577.131330 eV Total energy + Delta-G solvation = -4268.518498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.24770 -41.63998 -39.64223 -38.62497 -36.81722 -35.57218 -34.49952 -33.45660 -31.49458 -30.60019 -29.95492 -29.50604 -26.43448 -25.05270 -23.82394 -23.37465 -22.92266 -22.26146 -20.70737 -19.24406 -18.80052 -18.21404 -17.88208 -17.06521 -16.65452 -16.20059 -16.11225 -15.87674 -15.73289 -15.39289 -15.08610 -14.58466 -14.52051 -14.18484 -14.00871 -13.60584 -13.37597 -13.20290 -13.01552 -12.86083 -12.68556 -12.54152 -12.26672 -11.76495 -11.60957 -11.31137 -11.14950 -10.91486 -10.80013 -10.65394 -10.46291 -10.29970 -10.08726 -9.72579 -9.51098 -9.15023 -9.03409 -8.90418 -8.35834 -8.30611 -7.94984 -6.00791 -4.07347 -0.22076 0.54986 1.34023 2.35960 2.49855 2.99054 3.30577 3.33135 3.35308 3.38195 3.53876 3.76626 3.96347 4.06901 4.17180 4.42027 4.43103 4.57156 4.72339 5.00478 5.15691 5.26400 5.28259 5.35110 5.53817 5.58997 5.68431 5.75762 5.87054 5.99705 6.13487 6.18159 6.26050 6.27567 6.38470 6.48960 6.57127 6.70683 6.90736 7.06433 7.17475 7.30464 7.67956 7.69604 7.91159 7.94467 8.05924 8.41930 8.46705 8.95967 9.57444 11.04523 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.002933 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.445919 B = 9544.352270 C =10247.823223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.122 4.122 11 C 0.112 3.888 12 N -0.577 5.577 13 C 0.571 3.429 14 O -0.553 6.553 15 C -0.200 4.200 16 C 0.021 3.979 17 C -0.102 4.102 18 C -0.083 4.083 19 C 0.065 3.935 20 F -0.137 7.137 21 C -0.092 4.092 22 C -0.136 4.136 23 C 0.187 3.813 24 N -0.626 5.626 25 H 0.420 0.580 26 C 0.545 3.455 27 O -0.503 6.503 28 C 0.118 3.882 29 C -0.125 4.125 30 H 0.261 0.739 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 -13.524 15.258 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.307 5.307 13 C 0.357 3.643 14 O -0.434 6.434 15 C -0.206 4.206 16 C 0.000 4.000 17 C -0.105 4.105 18 C -0.103 4.103 19 C 0.045 3.955 20 F -0.115 7.115 21 C -0.112 4.112 22 C -0.157 4.157 23 C 0.084 3.916 24 N -0.265 5.265 25 H 0.259 0.741 26 C 0.338 3.662 27 O -0.378 6.378 28 C -0.004 4.004 29 C -0.163 4.163 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.479 -13.710 14.458 21.654 hybrid contribution -0.069 1.067 0.318 1.115 sum -8.547 -12.643 14.776 21.243 Atomic orbital electron populations 1.69836 1.05843 1.26524 1.50802 1.24967 0.94858 0.99030 0.95118 0.86679 0.79618 0.83214 0.78601 1.20298 1.21337 1.20362 1.21170 0.92897 0.90568 1.50404 0.92720 1.18637 0.92625 0.91713 0.94024 1.22009 0.98879 0.94101 1.01063 1.21768 0.91617 0.99882 0.87756 1.48068 1.35103 1.20558 1.26963 1.17427 0.83514 0.82200 0.81109 1.90768 1.39484 1.39537 1.73571 1.22094 0.93128 1.09844 0.95568 1.21914 0.99892 0.88080 0.90160 1.17328 0.91037 1.08304 0.93860 1.21256 1.00283 0.98236 0.90502 1.17395 0.93353 1.05933 0.78814 1.91530 1.93495 1.92700 1.33799 1.21126 0.95035 0.98260 0.96784 1.20636 0.99017 1.04750 0.91293 1.18051 0.93377 0.95869 0.84326 1.43456 1.11984 1.65513 1.05519 0.74064 1.18002 0.85690 0.77554 0.84946 1.91024 1.81795 1.47517 1.17510 1.22145 0.91091 0.86567 1.00590 1.22156 0.99978 0.94708 0.99494 0.92950 0.95347 0.92882 0.91968 0.90165 0.91828 0.82790 0.83071 0.83636 0.83617 0.91145 0.92800 0.94404 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 11.31 55.43 0.63 -24.17 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.80 8.56 -34.44 -0.29 -14.09 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 10 C -0.12 -2.56 5.30 -26.61 -0.14 -2.71 16 11 C 0.11 2.16 6.44 -3.71 -0.02 2.13 16 12 N -0.58 -11.35 2.91 -173.83 -0.51 -11.86 16 13 C 0.57 10.74 6.98 -12.59 -0.09 10.66 16 14 O -0.55 -11.42 16.45 5.25 0.09 -11.33 16 15 C -0.20 -3.05 4.90 -102.80 -0.50 -3.55 16 16 C 0.02 0.24 9.52 -38.30 -0.36 -0.12 16 17 C -0.10 -0.97 5.74 -106.85 -0.61 -1.58 16 18 C -0.08 -0.65 9.74 -39.01 -0.38 -1.03 16 19 C 0.07 0.49 7.28 -39.49 -0.29 0.20 16 20 F -0.14 -1.15 17.26 2.25 0.04 -1.11 16 21 C -0.09 -0.54 9.99 -39.45 -0.39 -0.93 16 22 C -0.14 -0.81 9.85 -39.40 -0.39 -1.20 16 23 C 0.19 1.64 6.64 -83.76 -0.56 1.09 16 24 N -0.63 -6.31 5.30 -10.96 -0.06 -6.37 16 25 H 0.42 3.12 8.75 -40.82 -0.36 2.76 16 26 C 0.55 7.95 6.37 -12.93 -0.08 7.87 16 27 O -0.50 -8.93 14.99 5.11 0.08 -8.86 16 28 C 0.12 2.38 4.59 -3.48 -0.02 2.36 16 29 C -0.12 -2.88 5.17 -26.39 -0.14 -3.02 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.07 1.50 7.79 -51.93 -0.40 1.10 16 41 H 0.05 1.00 5.04 -51.92 -0.26 0.74 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 2.65 6.03 -51.93 -0.31 2.33 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -32.71 357.10 -8.97 -41.68 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.05 Total: 2.02 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -4.55 Total: -1.36 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.06 Total: -42.40 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.16 Total: -20.19 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.71 -8.97 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879433264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.167 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds