Wall clock time and date at job start Wed Apr 1 2020 03:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99692 * 2 1 4 4 H 1.48503 * 109.46945 * 240.00249 * 3 2 1 5 5 H 1.48500 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46938 * 120.00509 * 3 2 1 7 7 C 1.37879 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45653 * 180.02562 * 9 7 2 11 11 C 1.53200 * 109.30975 * 181.37442 * 10 9 7 12 12 N 1.46924 * 108.77085 * 305.36516 * 11 10 9 13 13 C 1.34780 * 120.63161 * 233.58090 * 12 11 10 14 14 O 1.21630 * 119.99498 * 5.00905 * 13 12 11 15 15 C 1.47255 * 120.00437 * 185.00263 * 13 12 11 16 16 C 1.38308 * 120.39593 * 229.71617 * 15 13 12 17 17 C 1.41545 * 119.09329 * 180.02562 * 16 15 13 18 18 C 1.40398 * 120.23363 * 179.97438 * 17 16 15 19 19 C 1.37586 * 119.74726 * 179.78968 * 18 17 16 20 20 F 1.35100 * 119.82374 * 180.24445 * 19 18 17 21 21 C 1.39126 * 120.36591 * 0.49151 * 19 18 17 22 22 C 1.37701 * 120.62928 * 359.47902 * 21 19 18 23 23 C 1.39261 * 120.10569 * 0.27849 * 22 21 19 24 24 N 1.37955 * 120.01500 * 179.97438 * 23 22 21 25 25 H 0.97005 * 119.52880 * 359.97438 * 24 23 22 26 26 C 1.34600 * 120.93636 * 180.02562 * 24 23 22 27 27 O 1.21785 * 119.91824 * 179.97438 * 26 24 23 28 28 C 1.46930 * 118.73912 * 53.86557 * 12 11 10 29 29 C 1.53039 * 109.44834 * 300.06439 * 9 7 2 30 30 H 0.96997 * 120.00472 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.45480 * 60.03259 * 9 7 2 32 32 H 1.08999 * 109.49457 * 61.42403 * 10 9 7 33 33 H 1.08996 * 109.49816 * 301.32423 * 10 9 7 34 34 H 1.08998 * 109.58916 * 185.58141 * 11 10 9 35 35 H 1.08995 * 109.70293 * 65.22253 * 11 10 9 36 36 H 1.07997 * 120.45029 * 0.04100 * 16 15 13 37 37 H 1.08000 * 120.12556 * 0.02562 * 18 17 16 38 38 H 1.07997 * 119.68487 * 179.76220 * 21 19 18 39 39 H 1.08000 * 119.94547 * 180.26124 * 22 21 19 40 40 H 1.08994 * 109.59018 * 65.92273 * 28 12 11 41 41 H 1.09008 * 109.58415 * 186.35195 * 28 12 11 42 42 H 1.08995 * 109.49383 * 298.56965 * 29 9 7 43 43 H 1.09003 * 109.49906 * 58.66919 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6621 -0.0005 11 6 1.4769 -4.9867 -0.0352 12 7 0.5227 -5.0087 1.0818 13 6 0.5118 -6.0349 1.9555 14 8 1.3548 -6.9083 1.8782 15 6 -0.5204 -6.0986 3.0038 16 6 -0.1658 -6.3162 4.3228 17 6 -1.1806 -6.3729 5.3079 18 6 -0.8477 -6.5932 6.6539 19 6 -1.8418 -6.6421 7.6039 20 9 -1.5228 -6.8490 8.9003 21 6 -3.1743 -6.4848 7.2361 22 6 -3.5181 -6.2675 5.9206 23 6 -2.5301 -6.2088 4.9409 24 7 -2.8766 -5.9915 3.6234 25 1 -3.8108 -5.8809 3.3868 26 6 -1.9370 -5.9319 2.6615 27 8 -2.2638 -5.7397 1.5042 28 6 -0.4237 -3.8939 1.2246 29 6 0.3707 -2.5793 1.2487 30 1 -0.4851 0.8400 0.0004 31 1 0.6246 -2.5567 -0.8907 32 1 2.8559 -3.6191 0.9018 33 1 2.8883 -3.5914 -0.8782 34 1 2.1754 -5.8175 0.0645 35 1 0.9376 -5.0739 -0.9783 36 1 0.8712 -6.4409 4.5973 37 1 0.1851 -6.7199 6.9431 38 1 -3.9461 -6.5291 7.9903 39 1 -4.5557 -6.1427 5.6480 40 1 -1.1151 -3.8913 0.3820 41 1 -0.9796 -4.0036 2.1558 42 1 0.9987 -2.5467 2.1389 43 1 -0.3218 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879433264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:04 Heat of formation + Delta-G solvation = -92.011051 kcal Electronic energy + Delta-G solvation = -29846.524019 eV Core-core repulsion = 25577.131330 eV Total energy + Delta-G solvation = -4269.392689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.86091 -42.56729 -40.94677 -39.62090 -38.47007 -36.43196 -35.42567 -35.28475 -33.13621 -31.91487 -31.30985 -30.28303 -28.16954 -26.21020 -24.90177 -24.39578 -24.03618 -23.90996 -22.08642 -20.67120 -19.62424 -19.33560 -18.94570 -18.48650 -17.91864 -17.48847 -17.12592 -16.78221 -16.67948 -16.49460 -16.46515 -16.06252 -15.69384 -15.17373 -14.97101 -14.89405 -14.54449 -14.53556 -14.25965 -14.14847 -14.07908 -13.91733 -13.63709 -13.26733 -13.06423 -12.79206 -12.48622 -12.34616 -12.18051 -12.09955 -11.99407 -11.61854 -11.53228 -11.49753 -11.06555 -11.01470 -10.80639 -10.41363 -9.77424 -9.57039 -9.10834 -8.07361 -6.21919 -1.02729 -0.11114 0.57701 1.28165 1.43236 1.43840 1.51582 1.65649 1.83872 2.10490 2.44304 2.63663 3.08342 3.18217 3.19032 3.31709 3.35808 3.64342 3.81608 4.01946 4.05970 4.20469 4.26997 4.32878 4.44256 4.49766 4.51910 4.57191 4.62193 4.78334 4.82878 4.87948 4.95667 4.99428 5.03691 5.17155 5.21730 5.38427 5.47263 5.49034 5.58295 5.62788 5.76594 5.95253 6.08271 6.35968 6.39651 6.74900 6.87758 7.00257 7.45948 8.96259 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.002933 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.445919 B = 9544.352270 C =10247.823223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.111 4.111 11 C 0.115 3.885 12 N -0.587 5.587 13 C 0.572 3.428 14 O -0.579 6.579 15 C -0.259 4.259 16 C 0.062 3.938 17 C -0.126 4.126 18 C -0.077 4.077 19 C 0.058 3.942 20 F -0.141 7.141 21 C -0.072 4.072 22 C -0.126 4.126 23 C 0.182 3.818 24 N -0.610 5.610 25 H 0.433 0.567 26 C 0.545 3.455 27 O -0.552 6.552 28 C 0.140 3.860 29 C -0.113 4.113 30 H 0.261 0.739 31 H -0.001 1.001 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.181 0.819 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 -14.009 18.331 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.149 4.149 11 C -0.007 4.007 12 N -0.317 5.317 13 C 0.361 3.639 14 O -0.461 6.461 15 C -0.266 4.266 16 C 0.041 3.959 17 C -0.129 4.129 18 C -0.096 4.096 19 C 0.038 3.962 20 F -0.120 7.120 21 C -0.092 4.092 22 C -0.146 4.146 23 C 0.079 3.921 24 N -0.248 5.248 25 H 0.275 0.725 26 C 0.339 3.661 27 O -0.432 6.432 28 C 0.018 3.982 29 C -0.152 4.152 30 H 0.071 0.929 31 H 0.017 0.983 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.196 0.804 39 H 0.199 0.801 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.528 -14.211 17.578 24.530 hybrid contribution 0.178 1.130 -0.350 1.196 sum -9.350 -13.081 17.229 23.566 Atomic orbital electron populations 1.69975 1.07044 1.27231 1.51134 1.25710 0.95682 1.02220 0.94754 0.85690 0.78432 0.79250 0.78723 1.19875 1.20895 1.19756 1.21507 0.93030 0.91958 1.50747 0.92961 1.18596 0.92995 0.92406 0.93264 1.21845 0.98175 0.93676 1.01181 1.21689 0.91761 0.99042 0.88216 1.48087 1.35086 1.20939 1.27550 1.17909 0.83741 0.81074 0.81150 1.90724 1.41005 1.40051 1.74345 1.21706 0.92753 1.16288 0.95819 1.22187 1.01205 0.83299 0.89224 1.17355 0.90993 1.10489 0.94103 1.21393 1.01489 0.97088 0.89652 1.17605 0.94114 1.05979 0.78536 1.91532 1.93623 1.92740 1.34067 1.21542 0.95034 0.95252 0.97329 1.21000 1.00000 1.03156 0.90425 1.18400 0.93986 0.95616 0.84062 1.43221 1.11959 1.64171 1.05491 0.72496 1.17908 0.86032 0.77238 0.84935 1.90992 1.82454 1.50465 1.19326 1.21768 0.90374 0.85325 1.00768 1.21920 0.99290 0.95472 0.98508 0.92942 0.98329 0.93281 0.91180 0.89338 0.91623 0.81574 0.81513 0.80445 0.80139 0.92898 0.91117 0.94943 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.16 11.31 21.45 0.24 -51.92 16 2 C 0.02 0.83 5.30 84.66 0.45 1.28 16 3 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.53 -29.49 8.56 25.60 0.22 -29.27 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 9 C 0.05 2.33 2.06 -11.51 -0.02 2.31 16 10 C -0.11 -4.77 5.30 30.67 0.16 -4.61 16 11 C 0.11 4.58 6.44 86.37 0.56 5.14 16 12 N -0.59 -23.92 2.91 -822.11 -2.39 -26.31 16 13 C 0.57 22.09 6.98 86.61 0.60 22.69 16 14 O -0.58 -24.36 16.45 -4.13 -0.07 -24.43 16 15 C -0.26 -7.96 4.90 -18.68 -0.09 -8.05 16 16 C 0.06 1.39 9.52 23.10 0.22 1.61 16 17 C -0.13 -2.11 5.74 -21.31 -0.12 -2.23 16 18 C -0.08 -0.95 9.74 22.64 0.22 -0.73 16 19 C 0.06 0.64 7.28 22.33 0.16 0.80 16 20 F -0.14 -1.88 17.26 44.97 0.78 -1.10 16 21 C -0.07 -0.48 9.99 22.36 0.22 -0.26 16 22 C -0.13 -0.91 9.85 22.39 0.22 -0.69 16 23 C 0.18 2.68 6.64 39.05 0.26 2.94 16 24 N -0.61 -11.40 5.30 -306.87 -1.63 -13.03 16 25 H 0.43 5.65 8.75 -92.70 -0.81 4.84 16 26 C 0.54 16.00 6.37 86.48 0.55 16.55 16 27 O -0.55 -20.41 14.99 -4.62 -0.07 -20.48 16 28 C 0.14 5.90 4.59 86.51 0.40 6.30 16 29 C -0.11 -5.44 5.17 30.82 0.16 -5.28 16 30 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.09 3.38 6.99 -2.39 -0.02 3.36 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 39 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 40 H 0.05 2.40 7.79 -2.39 -0.02 2.38 16 41 H 0.07 2.73 5.04 -2.38 -0.01 2.72 16 42 H 0.03 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.08 4.14 6.03 -2.39 -0.01 4.13 16 Total: -1.00 -74.07 357.10 3.32 -70.75 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.26 Total: 12.61 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.17 Total: 8.51 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -3.77 Total: -91.25 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.14 Total: -44.90 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.10 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.07 3.32 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879433264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.260 kcal (2) G-P(sol) polarization free energy of solvation -74.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds