Wall clock time and date at job start Wed Apr 1 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47036 * 2 1 4 4 O 1.45207 * 109.47338 * 120.00064 * 2 1 3 5 5 C 1.34230 * 116.99493 * 270.00310 * 4 2 1 6 6 O 1.20818 * 120.00319 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99471 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.46927 * 179.97438 * 7 5 4 9 9 C 1.76197 * 99.99803 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00105 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99937 * 179.97438 * 9 8 7 12 12 N 1.31631 * 119.99867 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00003 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47327 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47507 * 120.00277 * 13 11 9 16 16 H 1.48502 * 109.47001 * 239.99789 * 13 11 9 17 17 C 1.50703 * 109.47673 * 240.00134 * 2 1 3 18 18 O 1.21282 * 119.99886 * 250.09609 * 17 2 1 19 19 N 1.34776 * 120.00100 * 70.08792 * 17 2 1 20 20 C 1.46932 * 120.62782 * 5.08823 * 19 17 2 21 21 C 1.52761 * 109.00529 * 233.57949 * 20 19 17 22 22 C 1.53035 * 109.38450 * 305.58813 * 21 20 19 23 23 C 1.53042 * 109.53768 * 61.24280 * 22 21 20 24 24 H 1.08996 * 109.49531 * 58.58588 * 23 22 21 25 25 C 1.50698 * 109.49853 * 178.68347 * 23 22 21 26 26 N 1.34776 * 119.99842 * 299.83822 * 25 23 22 27 27 O 1.21284 * 120.00326 * 119.83554 * 25 23 22 28 28 C 1.46924 * 120.63308 * 185.36297 * 19 17 2 29 29 H 1.09001 * 109.46855 * 55.00741 * 1 2 3 30 30 H 1.09005 * 109.47280 * 175.00401 * 1 2 3 31 31 H 1.08999 * 109.47393 * 295.00780 * 1 2 3 32 32 H 1.09002 * 109.47025 * 60.00324 * 7 5 4 33 33 H 1.09000 * 109.47326 * 299.99901 * 7 5 4 34 34 H 0.96997 * 120.00029 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.58404 * 353.41628 * 20 19 17 36 36 H 1.08995 * 109.58621 * 113.84007 * 20 19 17 37 37 H 1.08998 * 109.56003 * 185.55181 * 21 20 19 38 38 H 1.08995 * 109.35578 * 65.50332 * 21 20 19 39 39 H 1.09005 * 109.46274 * 301.21872 * 22 21 20 40 40 H 1.08998 * 109.44737 * 181.25761 * 22 21 20 41 41 H 0.96998 * 120.00448 * 359.97438 * 26 25 23 42 42 H 0.97002 * 120.00033 * 180.02562 * 26 25 23 43 43 H 1.08996 * 109.58741 * 246.16100 * 28 19 17 44 44 H 1.08998 * 109.58452 * 6.58174 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2170 0.0641 2.2811 6 8 1.9981 1.2518 2.2503 7 6 2.7182 -0.5772 3.5495 8 16 2.8900 0.6842 4.8361 9 6 3.4736 -0.3131 6.1663 10 1 3.6173 -1.3739 6.0233 11 6 3.7497 0.2648 7.3978 12 7 3.5760 1.5580 7.5717 13 14 4.3690 -0.7924 8.8078 14 1 4.4791 -2.2032 8.3575 15 1 5.7028 -0.3056 9.2427 16 1 3.4169 -0.7088 9.9443 17 6 2.0324 -0.7104 -1.2305 18 8 2.5717 -1.7919 -1.1285 19 7 1.8823 -0.1439 -2.4441 20 6 1.3325 1.2125 -2.5744 21 6 0.1529 1.1801 -3.5444 22 6 0.5999 0.5530 -4.8669 23 6 1.0645 -0.8842 -4.6207 24 1 0.2502 -1.4593 -4.1800 25 6 1.4740 -1.5115 -5.9283 26 7 0.5788 -1.6289 -6.9289 27 8 2.6091 -1.9107 -6.0803 28 6 2.2597 -0.8732 -3.6625 29 1 -0.3633 0.5894 -0.8419 30 1 -0.3634 -1.0238 -0.0895 31 1 -0.3634 0.4344 0.9313 32 1 3.6872 -1.0408 3.3640 33 1 2.0087 -1.3369 3.8775 34 1 3.7685 1.9617 8.4323 35 1 0.9932 1.5642 -1.6001 36 1 2.1008 1.8827 -2.9599 37 1 -0.1997 2.1957 -3.7242 38 1 -0.6527 0.5856 -3.1138 39 1 1.4222 1.1340 -5.2847 40 1 -0.2351 0.5498 -5.5676 41 1 -0.3292 -1.3100 -6.8073 42 1 0.8422 -2.0330 -7.7705 43 1 3.1051 -0.3765 -4.1385 44 1 2.5320 -1.8969 -3.4060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915386437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:48 Heat of formation + Delta-G solvation = -162.651692 kcal Electronic energy + Delta-G solvation = -27674.042409 eV Core-core repulsion = 23524.657674 eV Total energy + Delta-G solvation = -4149.384735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16941 -40.30769 -39.43547 -37.48694 -36.18647 -34.44267 -33.48991 -32.48039 -32.34865 -31.27671 -29.43448 -26.40093 -25.56574 -25.17255 -24.01075 -22.26897 -21.16164 -20.45703 -19.36157 -18.32451 -17.98871 -17.40928 -17.22386 -17.10612 -16.28677 -16.14569 -15.65905 -15.40883 -15.05960 -14.98915 -14.83892 -14.48242 -14.17091 -14.14353 -13.86826 -13.61047 -13.21048 -13.01776 -12.86954 -12.67885 -12.52542 -12.15171 -12.06511 -11.67903 -11.64877 -11.56912 -11.21167 -11.08665 -11.07405 -10.82019 -10.72484 -10.37724 -10.21568 -10.12433 -9.91262 -9.79500 -9.11763 -9.07113 -8.36521 -6.60264 -6.27285 -3.99658 2.09610 2.12169 2.29005 2.58836 2.79289 3.09195 3.20774 3.26273 3.31302 3.52462 3.95722 4.07279 4.15317 4.17700 4.24758 4.42106 4.54822 4.65020 4.74947 4.76243 4.89314 4.94673 4.97367 5.08970 5.19544 5.25263 5.27933 5.31492 5.40518 5.46210 5.56172 5.58591 5.67424 5.79217 5.85449 6.05248 6.10994 6.24005 6.56494 6.76102 6.95134 7.56941 7.73227 7.85322 8.09035 8.31604 9.18780 10.80319 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.031956 B = 0.001906 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.987075 B =14688.600230 C =15217.142384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 H 0.110 0.890 4 O -0.332 6.332 5 C 0.481 3.519 6 O -0.488 6.488 7 C -0.128 4.128 8 S -0.058 6.058 9 C -0.535 4.535 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.922 3.078 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.523 3.477 18 O -0.509 6.509 19 N -0.612 5.612 20 C 0.093 3.907 21 C -0.135 4.135 22 C -0.110 4.110 23 C -0.125 4.125 24 H 0.105 0.895 25 C 0.526 3.474 26 N -0.855 5.855 27 O -0.537 6.537 28 C 0.133 3.867 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.269 0.731 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.401 0.599 42 H 0.402 0.598 43 H 0.080 0.920 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 -0.937 -29.360 31.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 H 0.127 0.873 4 O -0.249 6.249 5 C 0.323 3.677 6 O -0.373 6.373 7 C -0.276 4.276 8 S 0.169 5.831 9 C -0.683 4.683 10 H 0.095 0.905 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.748 3.252 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.205 1.205 17 C 0.310 3.690 18 O -0.382 6.382 19 N -0.348 5.348 20 C -0.029 4.029 21 C -0.173 4.173 22 C -0.148 4.148 23 C -0.147 4.147 24 H 0.123 0.877 25 C 0.310 3.690 26 N -0.419 5.419 27 O -0.412 6.412 28 C 0.011 3.989 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.230 0.770 42 H 0.233 0.767 43 H 0.098 0.902 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.120 -0.110 -29.135 31.185 hybrid contribution 0.126 -1.788 0.491 1.858 sum -10.994 -1.898 -28.644 30.740 Atomic orbital electron populations 1.22228 0.91856 1.03928 1.04375 1.22339 0.96001 0.97706 0.83002 0.87275 1.86687 1.77443 1.41593 1.19166 1.23473 0.73967 0.85933 0.84367 1.90644 1.47069 1.16198 1.83424 1.23316 1.04791 1.05869 0.93583 1.85348 1.86781 1.08723 1.02291 1.22897 1.51566 0.96554 0.97276 0.90455 1.25004 0.94927 0.95393 0.98199 1.70018 1.45585 1.09975 1.24725 0.86063 0.78462 0.79978 0.80708 1.19459 1.20505 1.20517 1.20254 0.78980 0.85947 0.83867 1.90754 1.40917 1.21020 1.85549 1.47953 1.64904 1.16534 1.05431 1.21919 0.96329 0.83198 1.01470 1.21880 0.98065 1.02335 0.95058 1.21533 1.01705 0.93509 0.98093 1.21714 1.01093 0.98199 0.93736 0.87729 1.20429 0.85085 0.77998 0.85502 1.43865 1.15021 1.65512 1.17462 1.90797 1.19773 1.48566 1.82096 1.21317 0.94842 0.99713 0.83046 0.90146 0.90919 0.90026 0.87664 0.87691 0.92137 0.88756 0.90455 0.89552 0.90789 0.90741 0.90894 0.77010 0.76663 0.90167 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.21 37.15 0.34 -1.32 16 2 C 0.07 0.91 2.12 -27.89 -0.06 0.85 16 3 H 0.11 1.39 6.17 -51.93 -0.32 1.07 16 4 O -0.33 -5.74 9.44 -45.84 -0.43 -6.17 16 5 C 0.48 9.32 7.95 36.01 0.29 9.61 16 6 O -0.49 -10.22 15.08 -18.74 -0.28 -10.51 16 7 C -0.13 -2.67 6.27 36.01 0.23 -2.44 16 8 S -0.06 -1.54 20.58 -107.50 -2.21 -3.75 16 9 C -0.53 -15.10 9.50 30.94 0.29 -14.80 16 10 H 0.08 2.08 7.80 -52.49 -0.41 1.68 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 13 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.52 6.99 7.03 -10.98 -0.08 6.91 16 18 O -0.51 -8.96 15.97 -13.89 -0.22 -9.18 16 19 N -0.61 -5.78 2.98 -173.03 -0.52 -6.30 16 20 C 0.09 0.56 5.57 -3.93 -0.02 0.54 16 21 C -0.14 -0.46 5.95 -26.84 -0.16 -0.62 16 22 C -0.11 -0.37 5.08 -26.69 -0.14 -0.51 16 23 C -0.13 -0.73 2.68 -91.65 -0.25 -0.98 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 25 C 0.53 3.80 7.43 -10.99 -0.08 3.72 16 26 N -0.85 -2.74 8.76 31.22 0.27 -2.47 16 27 O -0.54 -6.47 16.76 5.55 0.09 -6.38 16 28 C 0.13 1.25 5.05 -3.71 -0.02 1.23 16 29 H 0.08 0.53 5.68 -51.93 -0.29 0.23 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 2.10 8.14 -51.91 -0.42 1.68 16 33 H 0.10 2.03 8.14 -51.92 -0.42 1.61 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 35 H 0.09 0.55 4.52 -51.93 -0.23 0.32 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.24 7.77 -51.93 -0.40 -0.16 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.09 7.54 -51.93 -0.39 -0.30 16 41 H 0.40 0.10 8.24 -40.82 -0.34 -0.24 16 42 H 0.40 1.07 8.93 -40.82 -0.36 0.71 16 43 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 44 H 0.10 1.23 7.04 -51.93 -0.37 0.86 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -38.13 378.09 -7.69 -45.82 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.05 Total: -2.24 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.25 Total: 4.18 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.49 Total: -33.77 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.84 Total: -32.24 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.13 -7.69 -45.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915386437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.836 kcal (2) G-P(sol) polarization free energy of solvation -38.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds