Wall clock time and date at job start Wed Apr 1 2020 01:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47036 * 2 1 4 4 O 1.45207 * 109.47338 * 120.00064 * 2 1 3 5 5 C 1.34230 * 116.99493 * 270.00310 * 4 2 1 6 6 O 1.20818 * 120.00319 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99471 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.46927 * 179.97438 * 7 5 4 9 9 C 1.76197 * 99.99803 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00105 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99937 * 179.97438 * 9 8 7 12 12 N 1.31631 * 119.99867 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00003 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47327 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47507 * 120.00277 * 13 11 9 16 16 H 1.48502 * 109.47001 * 239.99789 * 13 11 9 17 17 C 1.50703 * 109.47673 * 240.00134 * 2 1 3 18 18 O 1.21282 * 119.99886 * 250.09609 * 17 2 1 19 19 N 1.34776 * 120.00100 * 70.08792 * 17 2 1 20 20 C 1.46932 * 120.62782 * 5.08823 * 19 17 2 21 21 C 1.52761 * 109.00529 * 233.57949 * 20 19 17 22 22 C 1.53035 * 109.38450 * 305.58813 * 21 20 19 23 23 C 1.53042 * 109.53768 * 61.24280 * 22 21 20 24 24 H 1.08996 * 109.49531 * 58.58588 * 23 22 21 25 25 C 1.50698 * 109.49853 * 178.68347 * 23 22 21 26 26 N 1.34776 * 119.99842 * 299.83822 * 25 23 22 27 27 O 1.21284 * 120.00326 * 119.83554 * 25 23 22 28 28 C 1.46924 * 120.63308 * 185.36297 * 19 17 2 29 29 H 1.09001 * 109.46855 * 55.00741 * 1 2 3 30 30 H 1.09005 * 109.47280 * 175.00401 * 1 2 3 31 31 H 1.08999 * 109.47393 * 295.00780 * 1 2 3 32 32 H 1.09002 * 109.47025 * 60.00324 * 7 5 4 33 33 H 1.09000 * 109.47326 * 299.99901 * 7 5 4 34 34 H 0.96997 * 120.00029 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.58404 * 353.41628 * 20 19 17 36 36 H 1.08995 * 109.58621 * 113.84007 * 20 19 17 37 37 H 1.08998 * 109.56003 * 185.55181 * 21 20 19 38 38 H 1.08995 * 109.35578 * 65.50332 * 21 20 19 39 39 H 1.09005 * 109.46274 * 301.21872 * 22 21 20 40 40 H 1.08998 * 109.44737 * 181.25761 * 22 21 20 41 41 H 0.96998 * 120.00448 * 359.97438 * 26 25 23 42 42 H 0.97002 * 120.00033 * 180.02562 * 26 25 23 43 43 H 1.08996 * 109.58741 * 246.16100 * 28 19 17 44 44 H 1.08998 * 109.58452 * 6.58174 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2170 0.0641 2.2811 6 8 1.9981 1.2518 2.2503 7 6 2.7182 -0.5772 3.5495 8 16 2.8900 0.6842 4.8361 9 6 3.4736 -0.3131 6.1663 10 1 3.6173 -1.3739 6.0233 11 6 3.7497 0.2648 7.3978 12 7 3.5760 1.5580 7.5717 13 14 4.3690 -0.7924 8.8078 14 1 4.4791 -2.2032 8.3575 15 1 5.7028 -0.3056 9.2427 16 1 3.4169 -0.7088 9.9443 17 6 2.0324 -0.7104 -1.2305 18 8 2.5717 -1.7919 -1.1285 19 7 1.8823 -0.1439 -2.4441 20 6 1.3325 1.2125 -2.5744 21 6 0.1529 1.1801 -3.5444 22 6 0.5999 0.5530 -4.8669 23 6 1.0645 -0.8842 -4.6207 24 1 0.2502 -1.4593 -4.1800 25 6 1.4740 -1.5115 -5.9283 26 7 0.5788 -1.6289 -6.9289 27 8 2.6091 -1.9107 -6.0803 28 6 2.2597 -0.8732 -3.6625 29 1 -0.3633 0.5894 -0.8419 30 1 -0.3634 -1.0238 -0.0895 31 1 -0.3634 0.4344 0.9313 32 1 3.6872 -1.0408 3.3640 33 1 2.0087 -1.3369 3.8775 34 1 3.7685 1.9617 8.4323 35 1 0.9932 1.5642 -1.6001 36 1 2.1008 1.8827 -2.9599 37 1 -0.1997 2.1957 -3.7242 38 1 -0.6527 0.5856 -3.1138 39 1 1.4222 1.1340 -5.2847 40 1 -0.2351 0.5498 -5.5676 41 1 -0.3292 -1.3100 -6.8073 42 1 0.8422 -2.0330 -7.7705 43 1 3.1051 -0.3765 -4.1385 44 1 2.5320 -1.8969 -3.4060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915386437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:47 Heat of formation + Delta-G solvation = -190.930970 kcal Electronic energy + Delta-G solvation = -27675.268690 eV Core-core repulsion = 23524.657674 eV Total energy + Delta-G solvation = -4150.611016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16194 -41.35562 -40.39033 -38.30166 -37.58322 -35.06869 -34.61942 -34.20732 -33.09566 -32.03480 -30.96941 -27.72408 -27.16115 -25.73844 -24.94383 -22.88182 -22.35889 -21.14393 -20.17224 -19.99816 -18.94713 -18.73312 -18.01181 -17.85090 -17.50572 -17.35556 -16.90498 -16.44998 -16.35447 -16.15216 -15.91383 -15.51076 -15.11443 -14.97775 -14.77027 -14.58074 -14.44639 -14.13872 -13.98832 -13.73608 -13.56973 -13.31159 -13.19273 -12.92521 -12.78152 -12.66167 -12.60102 -12.16947 -12.03680 -11.90715 -11.78133 -11.69861 -11.66996 -11.18038 -11.03546 -10.84662 -10.67144 -10.40889 -9.86541 -8.73777 -8.38726 -6.17765 0.80385 1.03039 1.27417 1.36100 1.41385 1.49839 1.57605 1.59636 2.03185 2.22718 2.62571 2.96397 3.12982 3.24935 3.51152 3.61980 3.75502 3.77436 3.78310 3.82422 4.00096 4.13226 4.15066 4.22204 4.41471 4.44836 4.51032 4.55752 4.59645 4.74216 4.78957 4.86910 4.99354 5.05615 5.10370 5.15156 5.36349 5.37180 5.41150 5.87928 6.08448 6.17749 6.43157 6.57304 6.87307 7.03544 7.32132 8.70714 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.031956 B = 0.001906 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.987075 B =14688.600230 C =15217.142384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.062 3.938 3 H 0.116 0.884 4 O -0.339 6.339 5 C 0.492 3.508 6 O -0.507 6.507 7 C -0.112 4.112 8 S -0.123 6.123 9 C -0.551 4.551 10 H 0.083 0.917 11 C 0.018 3.982 12 N -0.908 5.908 13 Si 0.999 3.001 14 H -0.260 1.260 15 H -0.273 1.273 16 H -0.271 1.271 17 C 0.521 3.479 18 O -0.564 6.564 19 N -0.598 5.598 20 C 0.080 3.920 21 C -0.129 4.129 22 C -0.106 4.106 23 C -0.114 4.114 24 H 0.118 0.882 25 C 0.523 3.477 26 N -0.831 5.831 27 O -0.595 6.595 28 C 0.132 3.868 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.273 0.727 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.420 0.580 42 H 0.408 0.592 43 H 0.072 0.928 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 -0.747 -30.762 33.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.004 3.996 3 H 0.134 0.866 4 O -0.256 6.256 5 C 0.334 3.666 6 O -0.394 6.394 7 C -0.260 4.260 8 S 0.104 5.896 9 C -0.699 4.699 10 H 0.101 0.899 11 C -0.187 4.187 12 N -0.544 5.544 13 Si 0.820 3.180 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.196 1.196 17 C 0.308 3.692 18 O -0.442 6.442 19 N -0.331 5.331 20 C -0.041 4.041 21 C -0.166 4.166 22 C -0.144 4.144 23 C -0.136 4.136 24 H 0.136 0.864 25 C 0.308 3.692 26 N -0.395 5.395 27 O -0.476 6.476 28 C 0.009 3.991 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.252 0.748 42 H 0.240 0.760 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.242 0.123 -30.613 33.354 hybrid contribution 0.718 -1.823 0.715 2.086 sum -12.524 -1.700 -29.898 32.459 Atomic orbital electron populations 1.22256 0.88998 1.04761 1.05614 1.22760 0.98229 0.97428 0.81227 0.86628 1.86630 1.77348 1.41850 1.19762 1.22987 0.73622 0.85437 0.84565 1.90631 1.48058 1.16889 1.83871 1.23113 1.06032 1.04153 0.92736 1.85359 1.87054 1.12402 1.04776 1.23236 1.51804 0.96903 0.97950 0.89890 1.26076 0.94797 0.96748 1.01083 1.70150 1.46596 1.11920 1.25708 0.84905 0.77942 0.78287 0.76832 1.18394 1.19839 1.19626 1.20348 0.78604 0.85358 0.84915 1.90732 1.43690 1.23390 1.86390 1.47996 1.63403 1.17603 1.04147 1.22315 0.97928 0.80979 1.02860 1.21902 0.96674 1.04144 0.93917 1.21589 1.02744 0.91069 0.98988 1.21631 0.99459 1.00460 0.92094 0.86398 1.20670 0.84647 0.77432 0.86452 1.43679 1.15270 1.63948 1.16626 1.90782 1.22320 1.51290 1.83160 1.21259 0.96684 0.97627 0.83536 0.86167 0.90804 0.90934 0.86715 0.86003 0.91757 0.88355 0.89553 0.86843 0.89834 0.91089 0.87557 0.74841 0.76041 0.90976 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.21 71.98 0.66 -2.22 16 2 C 0.06 1.60 2.12 29.85 0.06 1.67 16 3 H 0.12 2.85 6.17 -2.39 -0.01 2.84 16 4 O -0.34 -11.76 9.44 -45.12 -0.43 -12.18 16 5 C 0.49 19.13 7.95 71.24 0.57 19.70 16 6 O -0.51 -21.38 15.08 21.99 0.33 -21.05 16 7 C -0.11 -4.70 6.27 71.24 0.45 -4.25 16 8 S -0.12 -6.67 20.58 -56.49 -1.16 -7.83 16 9 C -0.55 -31.35 9.50 67.96 0.65 -30.70 16 10 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 11 C 0.02 1.03 5.49 84.86 0.47 1.50 16 12 N -0.91 -54.51 13.22 21.65 0.29 -54.22 16 13 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 C 0.52 14.02 7.03 87.66 0.62 14.63 16 18 O -0.56 -20.78 15.97 15.56 0.25 -20.53 16 19 N -0.60 -10.87 2.98 -819.74 -2.44 -13.31 16 20 C 0.08 0.75 5.57 86.22 0.48 1.24 16 21 C -0.13 -0.32 5.95 30.53 0.18 -0.13 16 22 C -0.11 -0.32 5.08 30.62 0.16 -0.16 16 23 C -0.11 -1.14 2.68 -11.46 -0.03 -1.17 16 24 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 25 C 0.52 7.03 7.43 87.66 0.65 7.69 16 26 N -0.83 -3.38 8.76 -173.53 -1.52 -4.90 16 27 O -0.60 -14.82 16.76 -3.04 -0.05 -14.87 16 28 C 0.13 2.51 5.05 86.36 0.44 2.95 16 29 H 0.12 1.16 5.68 -2.39 -0.01 1.15 16 30 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 4.59 8.14 -2.39 -0.02 4.57 16 33 H 0.12 4.68 8.14 -2.39 -0.02 4.66 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.10 0.87 4.52 -2.39 -0.01 0.86 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.08 0.12 7.77 -2.39 -0.02 0.10 16 39 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.11 -0.30 7.54 -2.39 -0.02 -0.32 16 41 H 0.42 -1.34 8.24 -92.71 -0.76 -2.10 16 42 H 0.41 1.38 8.93 -92.71 -0.83 0.55 16 43 H 0.07 1.48 7.95 -2.39 -0.02 1.46 16 44 H 0.07 1.75 7.04 -2.39 -0.02 1.73 16 Total: -1.00 -87.51 378.09 2.10 -85.40 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -0.53 Total: 7.23 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.34 Total: 10.72 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -3.68 Total: -72.44 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: 0.10 Total: -68.63 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -1.16 Total: -7.83 kcal Total: -87.51 2.10 -85.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915386437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.528 kcal (2) G-P(sol) polarization free energy of solvation -87.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds