Wall clock time and date at job start Wed Apr 1 2020 01:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47074 * 2 1 4 4 O 1.45198 * 109.47398 * 239.99905 * 2 1 3 5 5 C 1.34229 * 117.00185 * 89.99630 * 4 2 1 6 6 O 1.20822 * 119.99647 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99958 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.47143 * 180.02562 * 7 5 4 9 9 C 1.76203 * 99.99854 * 180.02562 * 8 7 5 10 10 H 1.07991 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.38796 * 119.99642 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00040 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00316 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47405 * 90.00120 * 13 11 9 15 15 H 1.48502 * 109.47352 * 210.00426 * 13 11 9 16 16 H 1.48504 * 109.47287 * 330.00250 * 13 11 9 17 17 C 1.50702 * 109.46862 * 119.99337 * 2 1 3 18 18 O 1.21282 * 119.99276 * 104.37911 * 17 2 1 19 19 N 1.34776 * 120.00406 * 284.37887 * 17 2 1 20 20 C 1.46923 * 120.62810 * 4.12436 * 19 17 2 21 21 C 1.53627 * 108.54353 * 126.36649 * 20 19 17 22 22 C 1.53037 * 109.23808 * 54.85736 * 21 20 19 23 23 C 1.53043 * 109.53764 * 298.50507 * 22 21 20 24 24 H 1.09000 * 109.49920 * 301.42101 * 23 22 21 25 25 C 1.50699 * 109.49674 * 181.32046 * 23 22 21 26 26 N 1.34775 * 119.99981 * 60.16807 * 25 23 22 27 27 O 1.21286 * 120.00034 * 240.15969 * 25 23 22 28 28 C 1.46923 * 120.63118 * 184.39850 * 19 17 2 29 29 H 1.09005 * 109.46840 * 61.56171 * 1 2 3 30 30 H 1.08994 * 109.47098 * 181.56107 * 1 2 3 31 31 H 1.08995 * 109.46946 * 301.56406 * 1 2 3 32 32 H 1.09002 * 109.46967 * 60.00520 * 7 5 4 33 33 H 1.08995 * 109.47304 * 300.00818 * 7 5 4 34 34 H 0.96998 * 120.00400 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.58331 * 246.20189 * 20 19 17 36 36 H 1.09000 * 109.58926 * 6.62649 * 20 19 17 37 37 H 1.08993 * 109.63551 * 294.86152 * 21 20 19 38 38 H 1.09001 * 109.42876 * 174.72106 * 21 20 19 39 39 H 1.09008 * 109.45715 * 178.49392 * 22 21 20 40 40 H 1.09000 * 109.45653 * 58.52231 * 22 21 20 41 41 H 0.96997 * 120.00296 * 359.97438 * 26 25 23 42 42 H 0.97003 * 120.00196 * 179.97438 * 26 25 23 43 43 H 1.09006 * 109.58386 * 353.37597 * 28 19 17 44 44 H 1.08999 * 109.58586 * 113.65500 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9982 1.2518 -2.2504 7 6 2.7195 -0.5771 -3.5491 8 16 2.8911 0.6841 -4.8359 9 6 3.4746 -0.3133 -6.1660 10 1 3.6176 -1.3741 -6.0231 11 6 3.7504 0.2645 -7.3975 12 7 4.1859 -0.4807 -8.3914 13 14 3.5024 2.0993 -7.6449 14 1 4.7564 2.8186 -7.3056 15 1 3.1479 2.3642 -9.0625 16 1 2.4056 2.5739 -6.7634 17 6 2.0323 -0.7103 1.2306 18 8 2.4804 -1.8338 1.1417 19 7 1.9837 -0.0970 2.4298 20 6 1.3620 1.2269 2.5688 21 6 0.3013 1.1546 3.6777 22 6 0.9479 0.6265 4.9603 23 6 1.4875 -0.7850 4.7177 24 1 0.6726 -1.4369 4.4029 25 6 2.0950 -1.3168 5.9902 26 7 1.3359 -1.4474 7.0961 27 8 3.2671 -1.6273 6.0190 28 6 2.5566 -0.7371 3.6217 29 1 -0.3633 0.4894 -0.9037 30 1 -0.3633 -1.0272 0.0280 31 1 -0.3633 0.5379 0.8756 32 1 2.0106 -1.3374 -3.8772 33 1 3.6885 -1.0401 -3.3630 34 1 4.3783 -0.0770 -9.2521 35 1 2.1224 1.9616 2.8339 36 1 0.8902 1.5097 1.6278 37 1 -0.5023 0.4845 3.3727 38 1 -0.1034 2.1505 3.8578 39 1 0.2044 0.5990 5.7570 40 1 1.7675 1.2836 5.2509 41 1 0.3986 -1.1989 7.0732 42 1 1.7269 -1.7900 7.9151 43 1 2.8733 -1.7507 3.3755 44 1 3.4140 -0.1609 3.9695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915386438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:51 Heat of formation + Delta-G solvation = -189.732602 kcal Electronic energy + Delta-G solvation = -27708.745640 eV Core-core repulsion = 23558.186589 eV Total energy + Delta-G solvation = -4150.559051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17668 -41.37347 -40.40062 -38.28860 -37.61193 -35.07722 -34.69613 -34.22275 -33.09461 -32.02432 -31.03916 -27.90796 -27.18023 -25.71228 -24.97934 -22.88986 -22.38557 -21.16166 -20.21377 -20.03707 -18.99189 -18.73314 -18.03288 -17.86000 -17.55850 -17.37539 -17.11937 -16.44047 -16.28773 -16.13367 -15.93387 -15.49303 -15.12489 -15.02811 -14.90484 -14.76753 -14.45694 -14.14983 -14.03862 -13.76576 -13.57217 -13.36599 -13.32832 -13.01949 -12.86503 -12.74111 -12.61185 -12.15989 -12.03239 -11.92165 -11.89947 -11.72862 -11.67556 -11.18439 -11.03954 -10.85439 -10.67814 -10.66174 -9.86152 -9.07193 -8.52437 -6.26870 0.62695 0.96441 1.18912 1.31040 1.33062 1.47577 1.57004 1.58808 1.99383 2.23951 2.60063 2.64456 2.85413 3.12689 3.50919 3.57369 3.72982 3.75067 3.77633 3.81048 3.98462 4.06113 4.14602 4.21391 4.37241 4.42607 4.50248 4.55520 4.59678 4.74096 4.78671 4.86402 4.98580 5.05614 5.09750 5.12706 5.35630 5.36378 5.69246 5.87296 6.08566 6.11353 6.42496 6.51294 6.87112 6.90561 7.31516 8.60091 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.001983 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.361217 B =14116.551313 C =14561.324175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.063 3.937 3 H 0.119 0.881 4 O -0.339 6.339 5 C 0.493 3.507 6 O -0.504 6.504 7 C -0.094 4.094 8 S -0.147 6.147 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.045 3.955 12 N -0.915 5.915 13 Si 0.917 3.083 14 H -0.261 1.261 15 H -0.258 1.258 16 H -0.230 1.230 17 C 0.520 3.480 18 O -0.564 6.564 19 N -0.599 5.599 20 C 0.079 3.921 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.114 4.114 24 H 0.116 0.884 25 C 0.523 3.477 26 N -0.831 5.831 27 O -0.595 6.595 28 C 0.131 3.869 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.278 0.722 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.419 0.581 42 H 0.408 0.592 43 H 0.065 0.935 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 6.072 34.489 38.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.005 3.995 3 H 0.137 0.863 4 O -0.255 6.255 5 C 0.335 3.665 6 O -0.391 6.391 7 C -0.242 4.242 8 S 0.080 5.920 9 C -0.684 4.684 10 H 0.080 0.920 11 C -0.161 4.161 12 N -0.553 5.553 13 Si 0.738 3.262 14 H -0.186 1.186 15 H -0.182 1.182 16 H -0.154 1.154 17 C 0.307 3.693 18 O -0.442 6.442 19 N -0.332 5.332 20 C -0.042 4.042 21 C -0.165 4.165 22 C -0.145 4.145 23 C -0.136 4.136 24 H 0.134 0.866 25 C 0.308 3.692 26 N -0.395 5.395 27 O -0.476 6.476 28 C 0.008 3.992 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.251 0.749 42 H 0.240 0.760 43 H 0.084 0.916 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.459 6.785 34.180 37.727 hybrid contribution 0.645 -1.379 -0.451 1.588 sum -13.813 5.405 33.728 36.846 Atomic orbital electron populations 1.22284 0.89045 1.04695 1.05848 1.22783 0.98273 0.97406 0.81043 0.86325 1.86627 1.77261 1.41853 1.19787 1.22845 0.73707 0.85408 0.84505 1.90630 1.48044 1.16593 1.83850 1.22950 1.06627 1.02922 0.91721 1.84443 1.87429 1.14194 1.05959 1.22433 1.51363 0.96712 0.97923 0.92046 1.25620 0.92833 1.03330 0.94276 1.70022 1.43571 1.38279 1.03399 0.85834 0.81188 0.79304 0.79827 1.18567 1.18222 1.15371 1.20375 0.78212 0.85850 0.84895 1.90736 1.46964 1.20389 1.86067 1.48017 1.58384 1.20538 1.06302 1.22531 0.97285 0.82073 1.02316 1.22028 0.97052 1.04455 0.92926 1.21599 1.01562 0.91751 0.99541 1.21623 0.99226 1.01243 0.91504 0.86584 1.20689 0.85808 0.76438 0.86310 1.43681 1.15330 1.67639 1.12886 1.90782 1.18979 1.52113 1.85686 1.21268 0.95350 0.99044 0.83568 0.90547 0.90968 0.86141 0.85638 0.86350 0.91225 0.89475 0.88046 0.89959 0.86855 0.87647 0.91035 0.74855 0.76047 0.91617 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.19 71.98 0.66 -2.03 16 2 C 0.06 1.53 2.12 29.85 0.06 1.59 16 3 H 0.12 2.64 6.29 -2.39 -0.02 2.62 16 4 O -0.34 -11.09 9.46 -45.20 -0.43 -11.52 16 5 C 0.49 17.76 7.95 71.23 0.57 18.33 16 6 O -0.50 -19.22 15.08 21.98 0.33 -18.89 16 7 C -0.09 -3.74 6.27 71.23 0.45 -3.29 16 8 S -0.15 -7.20 18.55 -56.49 -1.05 -8.25 16 9 C -0.54 -31.16 10.04 67.95 0.68 -30.47 16 10 H 0.06 3.82 8.03 -2.92 -0.02 3.79 16 11 C 0.05 2.63 5.50 84.86 0.47 3.09 16 12 N -0.92 -55.59 13.97 21.65 0.30 -55.29 16 13 Si 0.92 43.65 27.74 68.60 1.90 45.55 16 14 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.23 -10.66 6.74 99.48 0.67 -9.99 16 17 C 0.52 13.35 7.01 87.66 0.61 13.96 16 18 O -0.56 -20.12 15.99 15.25 0.24 -19.87 16 19 N -0.60 -10.32 2.97 -818.06 -2.43 -12.75 16 20 C 0.08 0.64 5.72 86.51 0.49 1.14 16 21 C -0.13 -0.21 6.10 30.82 0.19 -0.02 16 22 C -0.11 -0.27 5.07 30.62 0.16 -0.12 16 23 C -0.11 -1.12 2.68 -11.46 -0.03 -1.15 16 24 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 25 C 0.52 6.99 7.43 87.66 0.65 7.64 16 26 N -0.83 -3.33 8.76 -173.53 -1.52 -4.85 16 27 O -0.60 -14.77 16.76 -3.05 -0.05 -14.82 16 28 C 0.13 2.43 5.07 86.36 0.44 2.87 16 29 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.12 1.00 6.07 -2.39 -0.01 0.99 16 32 H 0.13 4.67 8.14 -2.39 -0.02 4.65 16 33 H 0.12 4.58 8.14 -2.40 -0.02 4.56 16 34 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.09 0.60 8.14 -2.38 -0.02 0.59 16 36 H 0.10 0.71 4.34 -2.39 -0.01 0.70 16 37 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.11 -0.33 7.54 -2.38 -0.02 -0.35 16 40 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.42 -1.37 8.24 -92.71 -0.76 -2.13 16 42 H 0.41 1.36 8.93 -92.71 -0.83 0.53 16 43 H 0.07 1.72 7.00 -2.38 -0.02 1.71 16 44 H 0.07 1.46 7.96 -2.39 -0.02 1.44 16 Total: -1.00 -86.08 376.35 2.13 -83.95 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -0.57 Total: 5.21 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.40 Total: 11.53 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -3.64 Total: -72.89 kcal Atomic # 8 Polarization: -65.20 SS G_CDS: 0.10 Total: -65.10 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.90 Total: 45.55 kcal Atomic # 16 Polarization: -7.20 SS G_CDS: -1.05 Total: -8.25 kcal Total: -86.08 2.13 -83.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915386438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.782 kcal (2) G-P(sol) polarization free energy of solvation -86.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds