Wall clock time and date at job start Wed Apr 1 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00188 * 2 1 4 4 O 1.20826 * 120.00256 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00211 * 180.02562 * 3 2 1 6 6 H 1.08998 * 115.56011 * 34.30467 * 5 3 2 7 7 C 1.53005 * 117.49792 * 248.61766 * 5 3 2 8 8 C 1.52998 * 117.50249 * 179.97438 * 5 3 2 9 9 H 1.09002 * 117.51710 * 0.02562 * 8 5 3 10 10 C 1.52995 * 117.50182 * 214.97649 * 8 5 3 11 11 H 1.09000 * 110.53494 * 302.81602 * 10 8 5 12 12 N 1.47319 * 110.72784 * 65.73870 * 10 8 5 13 13 C 1.34531 * 106.61610 * 118.36859 * 12 10 8 14 14 O 1.21531 * 123.76304 * 180.20483 * 13 12 10 15 15 N 1.33786 * 112.45846 * 0.38223 * 13 12 10 16 16 C 1.39601 * 124.17519 * 179.86762 * 15 13 12 17 17 C 1.39401 * 119.83003 * 173.66886 * 16 15 13 18 18 C 1.36405 * 120.18109 * 179.97438 * 17 16 15 19 19 C 1.40852 * 119.81621 * 0.02562 * 18 17 16 20 20 C 1.41184 * 120.16568 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00428 * 333.48289 * 20 19 18 22 22 C 1.39911 * 119.99883 * 153.48988 * 20 19 18 23 23 N 1.30873 * 120.00126 * 335.12794 * 22 20 19 24 24 Si 1.86799 * 120.00324 * 155.12945 * 22 20 19 25 25 H 1.48497 * 109.47475 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.47003 * 299.99979 * 24 22 20 27 27 H 1.48500 * 109.46831 * 59.99843 * 24 22 20 28 28 C 1.40849 * 119.66398 * 0.27581 * 19 18 17 29 29 C 1.36410 * 119.81600 * 359.42075 * 28 19 18 30 30 C 1.34764 * 111.64822 * 359.59395 * 15 13 12 31 31 O 1.21231 * 127.15744 * 180.26529 * 30 15 13 32 32 H 1.08992 * 109.47119 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47087 * 300.00289 * 1 2 3 34 34 H 1.08995 * 109.46953 * 60.00015 * 1 2 3 35 35 H 1.09003 * 117.49320 * 145.01897 * 7 5 3 36 36 H 1.08995 * 117.49494 * 359.97438 * 7 5 3 37 37 H 0.96999 * 126.68646 * 298.62278 * 12 10 8 38 38 H 1.08009 * 119.90841 * 0.02562 * 17 16 15 39 39 H 1.07996 * 120.09461 * 179.97438 * 18 17 16 40 40 H 0.97004 * 119.99188 * 353.93536 * 23 22 20 41 41 H 1.07998 * 120.09183 * 179.72633 * 28 19 18 42 42 H 1.07998 * 119.91065 * 180.30148 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0783 0.4884 -0.5551 7 6 4.2464 1.8057 1.2630 8 6 4.2009 2.6670 -0.0012 9 1 3.5301 3.5262 -0.0007 10 6 5.5054 2.8486 -0.7796 11 1 6.2660 2.1568 -0.4177 12 7 5.2810 2.6630 -2.2237 13 6 5.5973 3.8291 -2.8152 14 8 5.5212 4.0216 -4.0128 15 7 6.0086 4.7520 -1.9382 16 6 6.3992 6.0461 -2.2869 17 6 6.6858 6.9764 -1.2891 18 6 7.0687 8.2427 -1.6217 19 6 7.1736 8.6092 -2.9776 20 6 7.5698 9.9177 -3.3302 21 1 7.3862 10.7385 -2.6528 22 6 8.2001 10.1510 -4.5573 23 7 8.8537 9.1852 -5.1513 24 14 8.1089 11.8410 -5.3479 25 1 8.8530 11.8273 -6.6328 26 1 6.6886 12.1928 -5.6015 27 1 8.7129 12.8466 -4.4373 28 6 6.8762 7.6654 -3.9799 29 6 6.5006 6.4013 -3.6311 30 6 5.9935 4.2799 -0.6760 31 8 6.3049 4.8762 0.3325 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 5.2058 1.3684 1.5397 36 1 3.6053 2.0983 2.0945 37 1 4.9632 1.8582 -2.6621 38 1 6.6053 6.6936 -0.2498 39 1 7.2900 8.9624 -0.8475 40 1 8.9762 8.3345 -4.7016 41 1 6.9501 7.9404 -5.0217 42 1 6.2770 5.6749 -4.3985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927176773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:02 Heat of formation + Delta-G solvation = -68.395168 kcal Electronic energy + Delta-G solvation = -29226.383045 eV Core-core repulsion = 24945.641628 eV Total energy + Delta-G solvation = -4280.741417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50667 -40.96487 -38.55984 -38.30916 -37.55402 -36.57245 -35.70178 -34.68223 -33.05776 -29.74572 -29.10627 -28.89290 -27.83675 -25.38144 -24.75930 -23.32146 -22.49854 -21.68510 -20.83887 -20.38753 -19.97771 -18.37732 -18.08387 -17.74564 -17.30766 -16.83759 -16.67913 -16.46740 -15.86045 -15.29681 -14.84592 -14.78620 -14.65942 -14.12917 -13.95290 -13.85655 -13.65960 -13.60928 -13.03835 -12.63598 -12.54003 -12.43686 -12.37509 -12.06866 -11.79311 -11.51142 -11.27064 -11.23249 -11.16066 -11.10160 -10.86292 -10.44033 -10.39733 -10.28584 -10.01029 -9.59986 -9.47416 -9.11530 -8.97612 -7.82398 -7.37956 -7.19466 -4.46595 1.60212 1.68992 2.13477 2.44598 2.46938 2.87936 3.07896 3.12415 3.16901 3.21401 3.35030 3.51876 3.88844 3.99017 4.05600 4.15907 4.22606 4.52452 4.53150 4.60444 4.69599 4.77830 4.88619 5.10271 5.16959 5.33757 5.37666 5.45993 5.62538 5.93805 5.97449 6.22393 6.27500 6.63413 6.77840 6.84559 7.00196 7.28217 7.32738 7.37644 7.45215 7.68183 7.73943 7.76766 7.91688 8.12631 8.22574 8.38182 8.68813 8.81592 9.98616 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.002283 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.570005 B =12260.627176 C =12471.509689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.490 3.510 4 O -0.499 6.499 5 C -0.158 4.158 6 H 0.141 0.859 7 C -0.122 4.122 8 C -0.122 4.122 9 H 0.131 0.869 10 C 0.125 3.875 11 H 0.130 0.870 12 N -0.728 5.728 13 C 0.698 3.302 14 O -0.529 6.529 15 N -0.482 5.482 16 C -0.044 4.044 17 C -0.083 4.083 18 C -0.217 4.217 19 C 0.095 3.905 20 C -0.509 4.509 21 H 0.079 0.921 22 C 0.036 3.964 23 N -0.788 5.788 24 Si 1.067 2.933 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.275 1.275 28 C -0.210 4.210 29 C -0.082 4.082 30 C 0.516 3.484 31 O -0.460 6.460 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.436 0.564 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.301 0.699 41 H 0.111 0.889 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 -19.149 9.855 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.332 3.668 4 O -0.386 6.386 5 C -0.177 4.177 6 H 0.159 0.841 7 C -0.159 4.159 8 C -0.142 4.142 9 H 0.149 0.851 10 C 0.015 3.985 11 H 0.147 0.853 12 N -0.393 5.393 13 C 0.400 3.600 14 O -0.403 6.403 15 N -0.218 5.218 16 C -0.133 4.133 17 C -0.102 4.102 18 C -0.237 4.237 19 C 0.091 3.909 20 C -0.536 4.536 21 H 0.097 0.903 22 C -0.187 4.187 23 N -0.411 5.411 24 Si 0.890 3.110 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.201 1.201 28 C -0.230 4.230 29 C -0.102 4.102 30 C 0.303 3.697 31 O -0.331 6.331 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.280 0.720 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.128 -17.507 8.340 21.432 hybrid contribution -0.899 -1.376 1.180 2.023 sum -10.027 -18.882 9.520 23.403 Atomic orbital electron populations 1.23318 0.75853 1.03877 1.02817 1.86471 1.23677 1.32965 1.84050 1.22523 0.90337 0.81448 0.72442 1.90724 1.66740 1.36388 1.44726 1.21750 0.88728 1.00229 1.07021 0.84087 1.23219 1.02535 0.99577 0.90585 1.22450 0.97076 0.94540 1.00102 0.85065 1.21584 0.96966 0.97143 0.82769 0.85301 1.45509 1.72633 1.14724 1.06425 1.15878 0.78253 0.80678 0.85179 1.90886 1.57408 1.79903 1.12058 1.43176 1.57266 1.13143 1.08229 1.17123 1.20318 0.81297 0.94559 1.20624 0.98721 0.93114 0.97761 1.20577 1.11999 0.95325 0.95832 1.17840 0.88776 0.92946 0.91310 1.20616 1.34359 0.94380 1.04249 0.90332 1.27110 0.91635 1.05727 0.94195 1.70467 1.24908 1.06132 1.39544 0.83616 0.77908 0.72708 0.76804 1.19774 1.19882 1.20053 1.20819 1.09443 0.93815 0.98939 1.20924 0.98025 0.97464 0.93745 1.20404 0.78197 0.87826 0.83261 1.90699 1.45733 1.63995 1.32679 0.87862 0.91757 0.91673 0.86076 0.87001 0.71971 0.85956 0.88096 0.88555 0.87128 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -2.98 10.56 -39.25 -0.41 -3.39 16 3 C 0.49 4.76 7.74 36.01 0.28 5.04 16 4 O -0.50 -6.58 16.01 -18.75 -0.30 -6.88 16 5 C -0.16 -1.11 6.01 -91.77 -0.55 -1.66 16 6 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.12 -0.76 9.90 -26.71 -0.26 -1.02 16 8 C -0.12 -1.13 4.94 -90.60 -0.45 -1.58 16 9 H 0.13 1.58 7.66 -51.93 -0.40 1.18 16 10 C 0.12 1.28 3.84 -68.20 -0.26 1.02 16 11 H 0.13 0.88 7.99 -51.93 -0.41 0.46 16 12 N -0.73 -8.28 6.24 -59.19 -0.37 -8.65 16 13 C 0.70 12.19 8.53 -88.02 -0.75 11.44 16 14 O -0.53 -10.99 14.62 5.34 0.08 -10.91 16 15 N -0.48 -9.25 2.81 -64.20 -0.18 -9.43 16 16 C -0.04 -1.02 6.57 -83.45 -0.55 -1.57 16 17 C -0.08 -1.95 9.24 -39.81 -0.37 -2.32 16 18 C -0.22 -5.44 9.74 -39.25 -0.38 -5.83 16 19 C 0.09 2.53 5.27 -106.80 -0.56 1.97 16 20 C -0.51 -13.46 8.97 -37.84 -0.34 -13.80 16 21 H 0.08 2.01 7.96 -52.49 -0.42 1.59 16 22 C 0.04 0.91 4.94 -17.33 -0.09 0.83 16 23 N -0.79 -20.95 12.34 55.55 0.69 -20.26 16 24 Si 1.07 21.45 30.00 -169.99 -5.10 16.35 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 28 C -0.21 -5.54 7.90 -39.25 -0.31 -5.85 16 29 C -0.08 -2.04 9.18 -39.80 -0.37 -2.41 16 30 C 0.52 8.30 7.50 -10.55 -0.08 8.22 16 31 O -0.46 -8.33 15.02 5.60 0.08 -8.25 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 35 H 0.12 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.44 3.57 8.96 -40.82 -0.37 3.21 16 38 H 0.12 2.74 5.32 -52.48 -0.28 2.46 16 39 H 0.10 2.38 8.06 -52.49 -0.42 1.95 16 40 H 0.30 8.25 6.72 -40.82 -0.27 7.97 16 41 H 0.11 2.99 6.57 -52.49 -0.34 2.64 16 42 H 0.13 3.24 5.14 -52.49 -0.27 2.97 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -33.62 362.90 -8.53 -42.15 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.52 Total: 10.02 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.97 Total: -6.23 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.14 Total: -38.34 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.55 Total: -29.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.10 Total: 16.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.62 -8.53 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927176773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.241 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds