Wall clock time and date at job start Wed Apr 1 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00396 * 2 1 4 4 O 1.20823 * 119.99875 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00042 * 179.97438 * 3 2 1 6 6 H 1.09002 * 115.55063 * 34.33255 * 5 3 2 7 7 C 1.52999 * 117.51706 * 248.62317 * 5 3 2 8 8 C 1.52998 * 117.49536 * 179.97438 * 5 3 2 9 9 H 1.08999 * 117.50254 * 0.02562 * 8 5 3 10 10 C 1.53004 * 117.49839 * 215.00087 * 8 5 3 11 11 H 1.08996 * 110.65554 * 298.54412 * 10 8 5 12 12 N 1.47312 * 110.59735 * 61.45553 * 10 8 5 13 13 C 1.34530 * 106.61939 * 118.52715 * 12 10 8 14 14 O 1.21534 * 123.77031 * 180.02562 * 13 12 10 15 15 N 1.33793 * 112.45445 * 0.26499 * 13 12 10 16 16 C 1.40220 * 124.17201 * 179.69574 * 15 13 12 17 17 C 1.39235 * 119.94571 * 353.88349 * 16 15 13 18 18 C 1.38502 * 120.43626 * 179.97438 * 17 16 15 19 19 C 1.37679 * 120.31438 * 359.97438 * 18 17 16 20 20 C 1.40736 * 119.87326 * 0.02562 * 19 18 17 21 21 C 1.41411 * 120.20991 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99821 * 208.00212 * 21 20 19 23 23 C 1.39933 * 119.99954 * 27.99753 * 21 20 19 24 24 N 1.30824 * 120.00273 * 13.48877 * 23 21 20 25 25 Si 1.86801 * 119.99813 * 193.48401 * 23 21 20 26 26 H 1.48499 * 109.47176 * 60.00690 * 25 23 21 27 27 H 1.48498 * 109.47065 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47425 * 300.00219 * 25 23 21 29 29 C 1.38201 * 119.93870 * 173.61705 * 16 15 13 30 30 C 1.34764 * 111.64568 * 359.53829 * 15 13 12 31 31 O 1.21235 * 127.15580 * 180.20733 * 30 15 13 32 32 H 1.09000 * 109.46653 * 59.99923 * 1 2 3 33 33 H 1.08992 * 109.47101 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46945 * 300.00537 * 1 2 3 35 35 H 1.08998 * 117.49631 * 145.03175 * 7 5 3 36 36 H 1.09001 * 117.49913 * 0.02562 * 7 5 3 37 37 H 0.96996 * 126.69349 * 298.50908 * 12 10 8 38 38 H 1.07999 * 119.78306 * 0.02604 * 17 16 15 39 39 H 1.07994 * 119.84623 * 179.97438 * 18 17 16 40 40 H 1.08002 * 120.06082 * 180.02562 * 19 18 17 41 41 H 0.96999 * 120.00532 * 179.97438 * 24 23 21 42 42 H 1.07997 * 120.15540 * 359.97432 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0786 0.4882 -0.5537 7 6 4.2460 1.8059 1.2643 8 6 4.2009 2.6670 -0.0001 9 1 3.5298 3.5259 -0.0005 10 6 5.5058 2.8483 -0.7781 11 1 6.2895 2.2114 -0.3681 12 7 5.3004 2.5619 -2.2084 13 6 5.5811 3.6978 -2.8724 14 8 5.5117 3.8087 -4.0807 15 7 5.9501 4.6901 -2.0544 16 6 6.3028 5.9767 -2.4861 17 6 6.4053 6.2492 -3.8477 18 6 6.7525 7.5166 -4.2853 19 6 6.9997 8.5218 -3.3776 20 6 6.8999 8.2608 -1.9983 21 6 7.1518 9.2882 -1.0597 22 1 7.5189 9.0413 -0.0745 23 6 6.9255 10.6245 -1.4076 24 7 6.2417 10.9133 -2.4849 25 14 7.5996 11.9962 -0.3336 26 1 9.0791 11.8892 -0.2646 27 1 7.2246 13.3101 -0.9152 28 1 7.0306 11.8800 1.0332 29 6 6.5427 6.9735 -1.5594 30 6 5.9375 4.3013 -0.7641 31 8 6.2176 4.9727 0.2057 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 5.2052 1.3687 1.5415 36 1 3.6046 2.0981 2.0958 37 1 5.0182 1.7187 -2.5960 38 1 6.2120 5.4674 -4.5673 39 1 6.8297 7.7173 -5.3437 40 1 7.2698 9.5087 -3.7235 41 1 6.0845 11.8397 -2.7258 42 1 6.4588 6.7641 -0.5033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927250135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:11 Heat of formation + Delta-G solvation = -62.044605 kcal Electronic energy + Delta-G solvation = -29362.445499 eV Core-core repulsion = 25081.979464 eV Total energy + Delta-G solvation = -4280.466036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50950 -40.92567 -38.54177 -38.24731 -37.31720 -36.51674 -35.69056 -34.41599 -33.03338 -29.84502 -29.00000 -28.69397 -27.74500 -25.37451 -24.73302 -23.13590 -22.93404 -21.66109 -20.75312 -20.22095 -19.93561 -18.33001 -17.98024 -17.27879 -17.21447 -16.81112 -16.64766 -16.09597 -15.51455 -15.24167 -15.06374 -14.84210 -14.74039 -14.57264 -13.93427 -13.85508 -13.61098 -13.15949 -13.01446 -12.90294 -12.50497 -12.38720 -12.21261 -11.80176 -11.41500 -11.38718 -11.23188 -11.19102 -11.11929 -11.02863 -10.87314 -10.80346 -10.53362 -9.97633 -9.89661 -9.59197 -9.52081 -9.11074 -9.04332 -7.47643 -7.09291 -6.70283 -4.36181 1.64460 1.72793 2.15725 2.43439 2.58037 2.82957 3.05208 3.09833 3.13315 3.21297 3.24090 3.56797 3.89278 3.97525 4.07759 4.19614 4.23824 4.55781 4.63714 4.67412 4.73152 4.81448 4.90859 5.13586 5.20335 5.34300 5.40853 5.66196 5.67113 5.91525 5.97751 6.31361 6.56621 6.73900 6.84008 7.01783 7.03543 7.23371 7.36875 7.39595 7.51861 7.64068 7.94435 8.03781 8.04364 8.18534 8.40540 8.63605 8.90366 8.93716 10.24900 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.002650 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.997810 B =10563.689899 C =11325.743060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.489 3.511 4 O -0.498 6.498 5 C -0.157 4.157 6 H 0.141 0.859 7 C -0.122 4.122 8 C -0.123 4.123 9 H 0.133 0.867 10 C 0.125 3.875 11 H 0.132 0.868 12 N -0.727 5.727 13 C 0.702 3.298 14 O -0.525 6.525 15 N -0.505 5.505 16 C 0.134 3.866 17 C -0.244 4.244 18 C -0.096 4.096 19 C -0.158 4.158 20 C 0.120 3.880 21 C -0.460 4.460 22 H 0.079 0.921 23 C 0.075 3.925 24 N -0.800 5.800 25 Si 0.911 3.089 26 H -0.264 1.264 27 H -0.279 1.279 28 H -0.265 1.265 29 C -0.231 4.231 30 C 0.522 3.478 31 O -0.442 6.442 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.436 0.564 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.281 0.719 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -21.163 5.972 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.332 3.668 4 O -0.384 6.384 5 C -0.177 4.177 6 H 0.159 0.841 7 C -0.159 4.159 8 C -0.143 4.143 9 H 0.151 0.849 10 C 0.015 3.985 11 H 0.149 0.851 12 N -0.393 5.393 13 C 0.404 3.596 14 O -0.398 6.398 15 N -0.242 5.242 16 C 0.046 3.954 17 C -0.264 4.264 18 C -0.115 4.115 19 C -0.178 4.178 20 C 0.117 3.883 21 C -0.490 4.490 22 H 0.097 0.903 23 C -0.142 4.142 24 N -0.425 5.425 25 Si 0.736 3.264 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.190 1.190 29 C -0.252 4.252 30 C 0.308 3.692 31 O -0.310 6.310 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.281 0.719 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.764 -20.130 5.705 21.702 hybrid contribution -0.315 0.266 0.186 0.452 sum -6.079 -19.864 5.890 21.593 Atomic orbital electron populations 1.23316 0.75872 1.03841 1.02836 1.86469 1.23662 1.32983 1.84088 1.22523 0.90341 0.81453 0.72496 1.90731 1.66716 1.36376 1.44624 1.21732 0.88738 1.00172 1.07011 0.84131 1.23233 1.02552 0.99531 0.90604 1.22470 0.97067 0.94646 1.00090 0.84927 1.21622 0.97409 0.96124 0.83306 0.85108 1.45531 1.74151 1.13668 1.05921 1.15875 0.77914 0.80542 0.85299 1.90894 1.56442 1.81686 1.10779 1.43730 1.59605 1.12498 1.08373 1.17573 1.03899 0.79543 0.94427 1.20898 1.13821 0.98759 0.92923 1.20602 1.00235 0.92824 0.97849 1.21483 1.04540 0.98658 0.93088 1.17422 0.87707 0.90566 0.92620 1.19491 1.39309 0.90186 1.00032 0.90323 1.25886 0.92811 1.00215 0.95332 1.69793 1.28616 1.21080 1.23045 0.86317 0.80377 0.79085 0.80620 1.18846 1.20394 1.19011 1.21337 1.11818 0.93604 0.98408 1.20491 0.77347 0.88452 0.82931 1.90767 1.44023 1.59716 1.36519 0.91673 0.87890 0.91751 0.86067 0.86958 0.71942 0.85230 0.88557 0.86109 0.90846 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.07 10.57 -39.27 -0.41 -3.48 16 3 C 0.49 4.92 7.74 36.01 0.28 5.20 16 4 O -0.50 -6.80 16.01 -18.75 -0.30 -7.10 16 5 C -0.16 -1.14 5.95 -91.77 -0.55 -1.69 16 6 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.12 -0.78 9.90 -26.71 -0.26 -1.05 16 8 C -0.12 -1.18 4.97 -90.60 -0.45 -1.63 16 9 H 0.13 1.67 7.63 -51.93 -0.40 1.28 16 10 C 0.12 1.30 3.86 -68.20 -0.26 1.04 16 11 H 0.13 0.88 7.96 -51.93 -0.41 0.47 16 12 N -0.73 -8.13 6.18 -59.19 -0.37 -8.50 16 13 C 0.70 12.11 8.54 -88.02 -0.75 11.36 16 14 O -0.53 -10.64 14.64 5.34 0.08 -10.56 16 15 N -0.51 -9.83 2.83 -64.40 -0.18 -10.01 16 16 C 0.13 3.19 6.55 -83.66 -0.55 2.64 16 17 C -0.24 -5.88 9.27 -39.11 -0.36 -6.24 16 18 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 19 C -0.16 -4.19 8.66 -38.84 -0.34 -4.53 16 20 C 0.12 3.29 5.55 -106.85 -0.59 2.70 16 21 C -0.46 -12.50 9.06 -37.74 -0.34 -12.84 16 22 H 0.08 2.07 7.88 -52.49 -0.41 1.65 16 23 C 0.07 1.91 5.20 -17.35 -0.09 1.82 16 24 N -0.80 -21.04 10.94 55.55 0.61 -20.44 16 25 Si 0.91 19.08 29.58 -169.99 -5.03 14.05 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 27 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 29 C -0.23 -5.95 9.06 -38.70 -0.35 -6.30 16 30 C 0.52 8.68 7.49 -10.56 -0.08 8.61 16 31 O -0.44 -8.51 15.06 5.60 0.08 -8.43 16 32 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.12 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.44 3.42 8.96 -40.82 -0.37 3.06 16 38 H 0.13 3.06 5.15 -52.49 -0.27 2.79 16 39 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.12 3.26 6.26 -52.49 -0.33 2.93 16 41 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 42 H 0.13 3.22 5.35 -52.49 -0.28 2.94 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -34.46 363.81 -8.63 -43.09 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.56 Total: 8.27 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.03 Total: -2.37 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.06 Total: -38.95 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.55 Total: -29.58 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.46 -8.63 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927250135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.958 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds