Wall clock time and date at job start Wed Apr 1 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 116.99692 * 2 1 4 4 O 1.20825 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99913 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.46781 * 180.02562 * 5 3 2 7 7 C 1.37102 * 120.00252 * 263.10528 * 6 5 3 8 8 H 1.07993 * 120.00043 * 142.05644 * 7 6 5 9 9 C 1.38952 * 119.99777 * 322.05368 * 7 6 5 10 10 N 1.31411 * 119.99881 * 158.28598 * 9 7 6 11 11 Si 1.86800 * 120.00188 * 338.29347 * 9 7 6 12 12 H 1.48494 * 109.47281 * 95.91344 * 11 9 7 13 13 H 1.48499 * 109.46833 * 215.91692 * 11 9 7 14 14 H 1.48501 * 109.47043 * 335.91197 * 11 9 7 15 15 C 1.34779 * 119.99930 * 83.11218 * 6 5 3 16 16 O 1.21286 * 120.00067 * 359.97438 * 15 6 5 17 17 C 1.50699 * 119.99766 * 179.97438 * 15 6 5 18 18 H 1.09001 * 115.56406 * 325.63419 * 17 15 6 19 19 C 1.53138 * 117.51684 * 111.38958 * 17 15 6 20 20 C 1.52346 * 59.88643 * 107.45869 * 19 17 15 21 21 C 1.50549 * 121.90768 * 111.26721 * 20 19 17 22 22 C 1.37685 * 133.31911 * 323.62288 * 21 20 19 23 23 C 1.38372 * 119.98656 * 180.02562 * 22 21 20 24 24 C 1.38307 * 119.83209 * 359.97438 * 23 22 21 25 25 C 1.37936 * 120.35153 * 0.02562 * 24 23 22 26 26 C 1.39083 * 105.97303 * 143.65201 * 21 20 19 27 27 N 1.39614 * 110.25533 * 0.02562 * 26 21 20 28 28 C 1.34606 * 112.21212 * 359.97438 * 27 26 21 29 29 O 1.21295 * 126.61260 * 179.97438 * 28 27 26 30 30 H 1.09004 * 109.47336 * 60.00257 * 1 2 3 31 31 H 1.09008 * 109.46667 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47252 * 299.99394 * 1 2 3 33 33 H 1.09001 * 109.46478 * 60.00695 * 5 3 2 34 34 H 1.08997 * 109.47333 * 300.01001 * 5 3 2 35 35 H 0.97002 * 120.00354 * 179.97438 * 10 9 7 36 36 H 1.08996 * 117.51601 * 214.92018 * 19 17 15 37 37 H 1.08997 * 117.51422 * 359.97438 * 19 17 15 38 38 H 1.08001 * 120.00536 * 0.04084 * 22 21 20 39 39 H 1.07997 * 120.08467 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.82466 * 179.97438 * 24 23 22 41 41 H 1.07994 * 119.90875 * 179.97438 * 25 24 23 42 42 H 0.96995 * 123.89577 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.3129 3.2972 -1.1774 8 1 4.0345 4.3272 -1.3444 9 6 5.0072 2.5976 -2.1568 10 7 4.9610 2.9979 -3.4076 11 14 6.0062 1.0881 -1.6956 12 1 5.1937 -0.1331 -1.9277 13 1 7.2331 1.0325 -2.5303 14 1 6.3860 1.1649 -0.2620 15 6 4.0378 3.3655 1.1601 16 8 3.7443 2.8195 2.2026 17 6 4.4655 4.8105 1.1606 18 1 5.2212 5.0777 0.4219 19 6 3.4053 5.8621 1.5003 20 6 4.5047 5.5337 2.5025 21 6 5.5897 6.5196 2.8449 22 6 6.2826 7.4549 2.1094 23 6 7.2495 8.2354 2.7182 24 6 7.5166 8.0734 4.0656 25 6 6.8246 7.1374 4.8057 26 6 5.8499 6.3470 4.2002 27 7 5.0290 5.3479 4.7266 28 6 4.2105 4.8199 3.7975 29 8 3.3943 3.9392 3.9690 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.9563 0.7808 -0.8892 34 1 3.9557 0.7809 0.8907 35 1 5.4459 2.5098 -4.0914 36 1 3.4637 6.8207 0.9849 37 1 2.3986 5.5085 1.7229 38 1 6.0713 7.5795 1.0576 39 1 7.7936 8.9698 2.1430 40 1 8.2716 8.6824 4.5405 41 1 7.0392 7.0166 5.8571 42 1 5.0459 5.0672 5.6549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933219803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:19 Heat of formation + Delta-G solvation = -74.673927 kcal Electronic energy + Delta-G solvation = -30622.927179 eV Core-core repulsion = 26341.913494 eV Total energy + Delta-G solvation = -4281.013684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.72803 -41.68459 -40.41478 -39.25411 -37.76695 -37.13431 -36.68304 -36.33376 -34.01324 -31.77706 -30.74676 -30.07713 -28.17461 -27.18828 -26.63933 -24.66342 -23.44886 -22.52324 -22.41943 -21.31014 -20.51003 -19.21788 -18.93807 -18.70660 -18.47346 -17.62344 -17.38692 -17.17593 -17.03688 -16.69553 -16.34155 -15.99673 -15.73468 -15.28887 -15.07727 -14.96359 -14.73561 -14.65361 -14.42006 -14.29789 -14.04211 -13.72971 -13.51025 -13.21341 -13.01970 -12.92123 -12.83281 -12.46087 -12.13089 -12.01630 -11.94892 -11.85601 -11.75992 -11.69133 -11.46816 -11.31583 -11.03383 -10.32826 -9.89741 -9.67239 -8.90548 -8.53780 -6.17755 0.17188 0.44578 1.10378 1.16656 1.27650 1.38822 1.43016 1.48179 1.90593 2.02149 2.15311 2.39880 2.78228 2.92344 3.10820 3.22910 3.36817 3.49055 3.80493 3.85770 3.91902 4.05014 4.06569 4.25310 4.26577 4.26883 4.31540 4.48628 4.50868 4.59582 4.60243 4.63041 4.75757 4.93393 5.11795 5.19849 5.24381 5.28621 5.54620 5.64720 5.70923 5.92177 6.02142 6.15285 6.17190 6.68715 6.89549 7.11886 7.28491 7.68486 8.59881 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.004136 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.092856 B = 6768.642350 C = 8116.198058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.522 6.522 5 C 0.105 3.895 6 N -0.457 5.457 7 C -0.343 4.343 8 H 0.086 0.914 9 C 0.034 3.966 10 N -0.885 5.885 11 Si 0.907 3.093 12 H -0.251 1.251 13 H -0.272 1.272 14 H -0.261 1.261 15 C 0.499 3.501 16 O -0.572 6.572 17 C -0.115 4.115 18 H 0.147 0.853 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.072 4.072 23 C -0.137 4.137 24 C -0.080 4.080 25 C -0.140 4.140 26 C 0.129 3.871 27 N -0.658 5.658 28 C 0.541 3.459 29 O -0.491 6.491 30 H 0.059 0.941 31 H 0.142 0.858 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.283 0.717 36 H 0.149 0.851 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.150 0.850 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 7.144 10.656 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.293 3.707 4 O -0.410 6.410 5 C -0.020 4.020 6 N -0.179 5.179 7 C -0.470 4.470 8 H 0.104 0.896 9 C -0.172 4.172 10 N -0.521 5.521 11 Si 0.731 3.269 12 H -0.177 1.177 13 H -0.198 1.198 14 H -0.185 1.185 15 C 0.289 3.711 16 O -0.454 6.454 17 C -0.136 4.136 18 H 0.165 0.835 19 C -0.126 4.126 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.091 4.091 23 C -0.156 4.156 24 C -0.098 4.098 25 C -0.161 4.161 26 C 0.033 3.967 27 N -0.303 5.303 28 C 0.328 3.672 29 O -0.363 6.363 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.167 0.833 37 H 0.105 0.895 38 H 0.155 0.845 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.167 0.833 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.177 6.582 10.974 13.461 hybrid contribution -0.186 -1.106 0.068 1.124 sum 3.991 5.476 11.042 12.955 Atomic orbital electron populations 1.23551 0.74903 1.05880 1.02120 1.86486 1.25170 1.32449 1.84145 1.24679 0.92929 0.81643 0.71467 1.90583 1.67247 1.37527 1.45674 1.21433 0.87441 0.87833 1.05342 1.43385 1.58862 1.08735 1.06964 1.18937 1.36649 0.99487 0.91915 0.89603 1.25854 0.96498 1.00519 0.94282 1.69824 1.39408 1.42288 1.00588 0.86404 0.80108 0.80587 0.79823 1.17682 1.19791 1.18497 1.20137 0.79367 0.88875 0.82679 1.90790 1.52408 1.70857 1.31388 1.21908 1.04828 0.90920 0.95938 0.83514 1.22919 0.92823 1.00023 0.96874 1.20209 1.01670 1.00797 0.90374 1.19049 0.99427 0.99790 0.94126 1.20572 0.94771 0.93360 1.00378 1.21416 0.98073 1.00471 0.95633 1.21318 0.98371 0.96293 0.93859 1.20691 0.96279 0.97456 1.01684 1.18518 0.94110 0.91228 0.92879 1.43492 1.37248 1.36609 1.12974 1.19593 0.80276 0.81198 0.86180 1.90855 1.34662 1.28159 1.82627 0.92233 0.84029 0.92673 0.86836 0.86594 0.90710 0.83291 0.89521 0.84515 0.82463 0.81719 0.83257 0.74044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.55 113.37 1.20 2.03 16 2 O -0.37 -14.03 10.57 -51.44 -0.54 -14.58 16 3 C 0.45 20.95 7.98 71.24 0.57 21.52 16 4 O -0.52 -27.31 16.01 21.97 0.35 -26.96 16 5 C 0.10 4.85 4.49 85.64 0.38 5.24 16 6 N -0.46 -23.00 1.74 -639.61 -1.11 -24.11 16 7 C -0.34 -17.97 8.76 84.04 0.74 -17.23 16 8 H 0.09 4.77 7.47 -2.91 -0.02 4.75 16 9 C 0.03 1.75 5.27 84.93 0.45 2.19 16 10 N -0.89 -47.53 13.96 21.66 0.30 -47.23 16 11 Si 0.91 39.13 25.01 68.60 1.72 40.84 16 12 H -0.25 -10.05 6.71 99.48 0.67 -9.38 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 C 0.50 24.92 7.15 87.66 0.63 25.55 16 16 O -0.57 -31.15 12.07 21.02 0.25 -30.90 16 17 C -0.11 -4.75 4.92 -11.67 -0.06 -4.81 16 18 H 0.15 5.79 7.45 -2.39 -0.02 5.77 16 19 C -0.09 -3.16 9.98 30.42 0.30 -2.86 16 20 C -0.13 -4.59 2.42 -54.09 -0.13 -4.72 16 21 C -0.12 -3.47 6.12 -19.84 -0.12 -3.59 16 22 C -0.07 -1.62 10.03 22.17 0.22 -1.40 16 23 C -0.14 -2.22 10.07 22.32 0.22 -1.99 16 24 C -0.08 -1.14 10.02 22.21 0.22 -0.92 16 25 C -0.14 -2.52 10.07 22.46 0.23 -2.29 16 26 C 0.13 3.37 7.12 38.37 0.27 3.64 16 27 N -0.66 -19.64 5.90 -303.37 -1.79 -21.43 16 28 C 0.54 21.61 7.77 87.71 0.68 22.29 16 29 O -0.49 -24.09 14.48 21.00 0.30 -23.79 16 30 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 31 H 0.14 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.11 5.05 3.67 -2.39 -0.01 5.04 16 34 H 0.12 5.10 7.64 -2.39 -0.02 5.08 16 35 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.15 4.08 8.14 -2.39 -0.02 4.06 16 37 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 38 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.42 10.09 8.96 -92.71 -0.83 9.26 16 Total: -1.00 -77.73 359.78 5.51 -72.22 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.22 Total: 33.28 kcal Atomic # 6 Polarization: 36.84 SS G_CDS: 5.80 Total: 42.65 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -2.60 Total: -92.77 kcal Atomic # 8 Polarization: -96.58 SS G_CDS: 0.37 Total: -96.22 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.72 Total: 40.84 kcal Total: -77.73 5.51 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.458 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds