Wall clock time and date at job start Wed Apr 1 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 116.99721 * 2 1 4 4 O 1.20824 * 120.00459 * 359.97438 * 3 2 1 5 5 C 1.50710 * 119.99984 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47143 * 179.97438 * 5 3 2 7 7 C 1.37101 * 120.00037 * 90.00233 * 6 5 3 8 8 H 1.07998 * 119.99936 * 301.42192 * 7 6 5 9 9 C 1.38947 * 120.00022 * 121.42185 * 7 6 5 10 10 N 1.31415 * 119.99764 * 147.32071 * 9 7 6 11 11 Si 1.86800 * 120.00025 * 327.32570 * 9 7 6 12 12 H 1.48504 * 109.47347 * 92.80645 * 11 9 7 13 13 H 1.48500 * 109.46781 * 212.80438 * 11 9 7 14 14 H 1.48500 * 109.47067 * 332.80092 * 11 9 7 15 15 C 1.34779 * 120.00111 * 269.72647 * 6 5 3 16 16 O 1.21295 * 119.99732 * 6.99052 * 15 6 5 17 17 C 1.50698 * 120.00386 * 186.99360 * 15 6 5 18 18 H 1.09007 * 115.55596 * 64.14806 * 17 15 6 19 19 C 1.53131 * 117.51792 * 278.40315 * 17 15 6 20 20 C 1.52331 * 59.82849 * 252.55880 * 19 17 15 21 21 C 1.50546 * 121.92352 * 248.78139 * 20 19 17 22 22 C 1.37686 * 133.31940 * 36.28824 * 21 20 19 23 23 C 1.38371 * 119.98822 * 179.97438 * 22 21 20 24 24 C 1.38312 * 119.83139 * 0.02562 * 23 22 21 25 25 C 1.37929 * 120.34731 * 0.02562 * 24 23 22 26 26 C 1.39090 * 105.97712 * 216.26653 * 21 20 19 27 27 N 1.39621 * 110.24613 * 0.02562 * 26 21 20 28 28 C 1.34593 * 112.21722 * 359.97438 * 27 26 21 29 29 O 1.21297 * 126.61539 * 179.97438 * 28 27 26 30 30 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47517 * 300.00025 * 1 2 3 32 32 H 1.08999 * 109.47258 * 60.00303 * 1 2 3 33 33 H 1.08997 * 109.46600 * 59.99741 * 5 3 2 34 34 H 1.08993 * 109.47061 * 299.99966 * 5 3 2 35 35 H 0.96998 * 119.99646 * 180.02562 * 10 9 7 36 36 H 1.09002 * 117.51480 * 359.97438 * 19 17 15 37 37 H 1.08998 * 117.51926 * 145.07013 * 19 17 15 38 38 H 1.07994 * 120.00646 * 359.94500 * 22 21 20 39 39 H 1.07997 * 120.08905 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.82192 * 180.02562 * 24 23 22 41 41 H 1.08007 * 119.90160 * 180.02562 * 25 24 23 42 42 H 0.97008 * 123.88427 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1755 3.3379 1.1868 8 1 3.3667 3.4186 1.8979 9 6 5.4126 3.9011 1.4749 10 7 5.4832 5.0004 2.1916 11 14 6.9753 3.0958 0.8435 12 1 7.3500 3.6975 -0.4614 13 1 8.0725 3.3106 1.8209 14 1 6.7459 1.6390 0.6692 15 6 4.1785 3.3237 -1.1677 16 8 3.8911 2.7827 -2.2146 17 6 4.7557 4.7157 -1.1725 18 1 5.7746 4.8037 -0.7950 19 6 3.7981 5.8797 -0.9021 20 6 4.3414 5.6456 -2.3058 21 6 5.3144 6.5957 -2.9516 22 6 6.3630 7.3464 -2.4693 23 6 7.0939 8.1465 -3.3297 24 6 6.7678 8.1899 -4.6731 25 6 5.7173 7.4401 -5.1597 26 6 4.9772 6.6307 -4.3006 27 7 3.8883 5.7927 -4.5483 28 6 3.4551 5.1777 -3.4322 29 8 2.5297 4.3979 -3.3486 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.9563 0.7806 -0.8891 34 1 3.9557 0.7810 0.8908 35 1 6.3468 5.3938 2.3924 36 1 2.7507 5.6384 -0.7211 37 1 4.1870 6.7332 -0.3467 38 1 6.6146 7.3111 -1.4197 39 1 7.9170 8.7357 -2.9532 40 1 7.3386 8.8141 -5.3445 41 1 5.4691 7.4790 -6.2101 42 1 3.4903 5.6677 -5.4241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933219804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:24 Heat of formation + Delta-G solvation = -60.262093 kcal Electronic energy + Delta-G solvation = -31036.134240 eV Core-core repulsion = 26755.745500 eV Total energy + Delta-G solvation = -4280.388740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38830 -39.90198 -38.78739 -37.92989 -36.00660 -35.51800 -35.14513 -34.66024 -32.19690 -30.69747 -29.13017 -28.80692 -26.72581 -25.57917 -24.61600 -23.07908 -22.40980 -21.28657 -20.73506 -19.76770 -19.00826 -17.68121 -17.50275 -17.03950 -16.48704 -16.03785 -15.88778 -15.73441 -15.34954 -15.02880 -14.81983 -14.39543 -14.28830 -14.00932 -13.77923 -13.57644 -13.41529 -12.96169 -12.80280 -12.68200 -12.49561 -12.31291 -11.87370 -11.69844 -11.61409 -11.34410 -11.21746 -11.08495 -10.87982 -10.58568 -10.32551 -10.30785 -10.21046 -9.95538 -9.86998 -9.58086 -8.96781 -8.77145 -8.61306 -7.80613 -7.67063 -6.63257 -4.31490 1.29221 1.40650 2.80251 2.95066 3.01817 3.09095 3.15561 3.23700 3.24748 3.70157 3.89827 4.03120 4.18743 4.49448 4.62496 4.66295 4.74567 4.88743 5.03183 5.23079 5.37872 5.38938 5.46930 5.49541 5.53939 5.55121 5.70925 5.76679 5.83560 5.94054 6.02375 6.08451 6.14846 6.28169 6.36598 6.49785 6.59091 6.64376 6.79170 6.91893 7.08674 7.22017 7.56549 7.62838 8.43483 8.46929 8.48668 8.89096 9.15749 9.60546 10.45819 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.004765 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.436121 B = 5874.691901 C = 7482.179313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.371 6.371 3 C 0.444 3.556 4 O -0.486 6.486 5 C 0.118 3.882 6 N -0.452 5.452 7 C -0.356 4.356 8 H 0.096 0.904 9 C 0.093 3.907 10 N -0.829 5.829 11 Si 0.833 3.167 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.260 1.260 15 C 0.529 3.471 16 O -0.558 6.558 17 C -0.088 4.088 18 H 0.131 0.869 19 C -0.069 4.069 20 C -0.151 4.151 21 C -0.094 4.094 22 C -0.066 4.066 23 C -0.146 4.146 24 C -0.091 4.091 25 C -0.149 4.149 26 C 0.154 3.846 27 N -0.668 5.668 28 C 0.563 3.437 29 O -0.460 6.460 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.276 0.724 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 3.224 -7.926 8.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.288 6.288 3 C 0.285 3.715 4 O -0.371 6.371 5 C -0.007 4.007 6 N -0.174 5.174 7 C -0.482 4.482 8 H 0.114 0.886 9 C -0.117 4.117 10 N -0.461 5.461 11 Si 0.657 3.343 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.184 1.184 15 C 0.318 3.682 16 O -0.438 6.438 17 C -0.109 4.109 18 H 0.149 0.851 19 C -0.107 4.107 20 C -0.155 4.155 21 C -0.097 4.097 22 C -0.084 4.084 23 C -0.165 4.165 24 C -0.110 4.110 25 C -0.170 4.170 26 C 0.055 3.945 27 N -0.312 5.312 28 C 0.350 3.650 29 O -0.329 6.329 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.219 2.886 -8.158 8.739 hybrid contribution 0.664 -0.394 -0.576 0.963 sum 1.883 2.493 -8.735 9.276 Atomic orbital electron populations 1.23098 0.77710 1.02659 1.02200 1.86502 1.22511 1.34712 1.85099 1.24847 0.93189 0.81082 0.72430 1.90646 1.66652 1.36210 1.43567 1.21092 0.86250 0.88402 1.04918 1.43138 1.61481 1.06901 1.05929 1.18753 0.98068 1.34318 0.97107 0.88621 1.25496 0.97737 0.93913 0.94594 1.69926 1.26505 1.13922 1.35729 0.87602 0.84651 0.82750 0.79332 1.19451 1.20326 1.18366 1.19666 0.78874 0.86037 0.83625 1.90640 1.53061 1.68025 1.32073 1.21881 1.01885 0.90865 0.96221 0.85130 1.22703 1.00444 0.98839 0.88674 1.20392 1.00480 1.02939 0.91698 1.19089 0.97924 0.99873 0.92775 1.20351 0.93129 0.94517 1.00427 1.20978 1.01042 1.01057 0.93429 1.20781 0.96209 0.98337 0.95651 1.20264 0.98003 0.99945 0.98799 1.18209 0.89147 0.92709 0.94386 1.43677 1.31510 1.44031 1.11960 1.19269 0.83366 0.79004 0.83322 1.90842 1.27922 1.30616 1.83545 0.88861 0.92350 0.92388 0.88009 0.86733 0.91368 0.87108 0.86692 0.85312 0.85552 0.85603 0.85988 0.75391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -6.74 10.57 -39.24 -0.41 -7.16 16 3 C 0.44 9.60 8.03 36.01 0.29 9.89 16 4 O -0.49 -12.16 16.18 -18.75 -0.30 -12.46 16 5 C 0.12 2.50 5.92 -5.19 -0.03 2.47 16 6 N -0.45 -10.92 1.27 -116.10 -0.15 -11.07 16 7 C -0.36 -8.93 8.96 -14.93 -0.13 -9.06 16 8 H 0.10 2.64 8.06 -52.49 -0.42 2.22 16 9 C 0.09 2.26 3.86 -17.47 -0.07 2.19 16 10 N -0.83 -20.35 13.96 55.50 0.77 -19.57 16 11 Si 0.83 18.42 26.24 -169.99 -4.46 13.96 16 12 H -0.27 -5.90 6.36 56.52 0.36 -5.54 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 15 C 0.53 13.19 6.17 -10.99 -0.07 13.12 16 16 O -0.56 -14.94 13.38 -17.67 -0.24 -15.17 16 17 C -0.09 -1.96 3.86 -92.04 -0.36 -2.31 16 18 H 0.13 2.91 4.74 -51.92 -0.25 2.67 16 19 C -0.07 -1.41 9.88 -27.00 -0.27 -1.68 16 20 C -0.15 -3.03 2.41 -157.53 -0.38 -3.41 16 21 C -0.09 -1.58 6.12 -104.58 -0.64 -2.22 16 22 C -0.07 -0.95 10.03 -39.73 -0.40 -1.35 16 23 C -0.15 -1.70 10.07 -39.51 -0.40 -2.10 16 24 C -0.09 -0.98 10.02 -39.67 -0.40 -1.38 16 25 C -0.15 -1.78 10.07 -39.29 -0.40 -2.18 16 26 C 0.15 2.36 7.12 -83.59 -0.59 1.76 16 27 N -0.67 -10.97 5.90 -9.79 -0.06 -11.02 16 28 C 0.56 11.83 7.52 -11.03 -0.08 11.75 16 29 O -0.46 -11.40 15.54 -17.67 -0.27 -11.67 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.10 2.05 7.52 -51.93 -0.39 1.66 16 34 H 0.11 2.12 8.04 -51.93 -0.42 1.70 16 35 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 36 H 0.11 2.44 8.14 -51.93 -0.42 2.02 16 37 H 0.11 2.11 8.14 -51.93 -0.42 1.68 16 38 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.41 5.44 8.96 -40.82 -0.37 5.07 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -33.07 362.73 -7.33 -40.40 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.82 Total: 11.22 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: -2.85 Total: 17.09 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.57 Total: -41.67 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -1.23 Total: -46.47 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.46 Total: 13.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.07 -7.33 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.864 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds