Wall clock time and date at job start Wed Apr 1 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00006 * 2 1 4 4 H 1.48503 * 109.46989 * 269.99877 * 3 2 1 5 5 H 1.48508 * 109.46992 * 29.99586 * 3 2 1 6 6 H 1.48495 * 109.47244 * 149.99595 * 3 2 1 7 7 C 1.38816 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99697 * 189.10204 * 7 2 1 9 9 N 1.36930 * 119.99674 * 9.10318 * 7 2 1 10 10 C 1.48148 * 127.84080 * 15.57192 * 9 7 2 11 11 C 1.54394 * 104.61729 * 140.41574 * 10 9 7 12 12 H 1.09001 * 117.60868 * 242.76360 * 11 10 9 13 13 C 1.54141 * 104.96499 * 23.82864 * 11 10 9 14 14 H 1.08996 * 121.79033 * 222.19676 * 13 11 10 15 15 C 1.48151 * 127.83803 * 195.57172 * 9 7 2 16 16 C 1.52996 * 118.12267 * 87.19256 * 11 10 9 17 17 H 1.09001 * 117.44679 * 16.06279 * 16 11 10 18 18 N 1.46495 * 117.44054 * 160.80644 * 16 11 10 19 19 C 1.34782 * 120.00187 * 205.16253 * 18 16 11 20 20 O 1.21282 * 119.99394 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00196 * 180.02562 * 19 18 16 22 22 C 1.50703 * 109.47025 * 180.02562 * 21 19 18 23 23 C 1.33970 * 126.90307 * 264.97477 * 22 21 19 24 24 O 1.34476 * 110.15381 * 180.02562 * 23 22 21 25 25 C 1.34812 * 110.88764 * 0.02562 * 24 23 22 26 26 C 1.38929 * 133.47062 * 179.97438 * 25 24 23 27 27 C 1.38051 * 119.80105 * 179.97438 * 26 25 24 28 28 F 1.35098 * 119.68634 * 179.97438 * 27 26 25 29 29 C 1.38940 * 120.63103 * 359.97438 * 27 26 25 30 30 C 1.36721 * 120.39288 * 0.03030 * 29 27 26 31 31 C 1.39406 * 119.74904 * 359.96502 * 30 29 27 32 32 H 0.96998 * 120.00317 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.40776 * 21.63199 * 10 9 7 34 34 H 1.08999 * 110.40665 * 259.20164 * 10 9 7 35 35 H 1.09004 * 110.40350 * 338.36844 * 15 9 7 36 36 H 1.08997 * 110.40839 * 100.68060 * 15 9 7 37 37 H 0.97004 * 120.00345 * 25.16872 * 18 16 11 38 38 H 1.08996 * 109.47258 * 60.00326 * 21 19 18 39 39 H 1.09004 * 109.47229 * 300.00148 * 21 19 18 40 40 H 1.07997 * 124.92217 * 0.03583 * 23 22 21 41 41 H 1.08007 * 120.09901 * 0.02566 * 26 25 24 42 42 H 1.07999 * 119.81091 * 179.97438 * 29 27 26 43 43 H 1.08002 * 120.12896 * 179.70422 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3385 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7103 11 6 0.0639 -3.8173 -1.6163 12 1 -0.1483 -3.6883 -2.6776 13 6 1.2856 -4.5965 -1.0906 14 1 2.0088 -5.0539 -1.7656 15 6 1.8196 -3.7545 0.0888 16 6 -0.1183 -5.1932 -0.9723 17 1 -0.5675 -5.2278 0.0202 18 7 -0.4525 -6.3131 -1.8557 19 6 -1.1060 -7.3855 -1.3664 20 8 -1.4177 -7.4231 -0.1949 21 6 -1.4493 -8.5378 -2.2749 22 6 -2.1729 -9.5998 -1.4878 23 6 -1.6330 -10.6818 -0.9111 24 8 -2.5864 -11.4032 -0.2955 25 6 -3.7958 -10.8258 -0.4420 26 6 -5.0732 -11.1604 -0.0104 27 6 -6.1406 -10.3449 -0.3289 28 9 -7.3819 -10.6727 0.0916 29 6 -5.9504 -9.1901 -1.0776 30 6 -4.7006 -8.8447 -1.5111 31 6 -3.6112 -9.6566 -1.1987 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3432 -1.7022 -1.2913 34 1 -0.7317 -2.7499 0.1080 35 1 2.9092 -3.7784 0.1106 36 1 1.4133 -4.1174 1.0329 37 1 -0.2034 -6.2828 -2.7927 38 1 -0.5338 -8.9558 -2.6935 39 1 -2.0903 -8.1849 -3.0830 40 1 -0.5840 -10.9375 -0.9367 41 1 -5.2307 -12.0555 0.5732 42 1 -6.7949 -8.5618 -1.3195 43 1 -4.5583 -7.9486 -2.0970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959846434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:31 Heat of formation + Delta-G solvation = 13.834449 kcal Electronic energy + Delta-G solvation = -28265.801038 eV Core-core repulsion = 24000.998154 eV Total energy + Delta-G solvation = -4264.802883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.25301 -42.81478 -39.85129 -38.37002 -37.96152 -34.54343 -34.14515 -32.68634 -31.11238 -30.46338 -29.74208 -28.12791 -27.17661 -25.59306 -23.92874 -22.70123 -22.34016 -20.95497 -20.49666 -19.90412 -19.32560 -18.15096 -17.76231 -17.15976 -16.98897 -16.88279 -16.38751 -16.22768 -15.71765 -15.30199 -15.25002 -14.82137 -14.67822 -14.15653 -14.06092 -13.64387 -13.28211 -13.23638 -13.12302 -12.80108 -12.75974 -12.24305 -12.23352 -12.01111 -11.54381 -11.51315 -11.34811 -11.01780 -10.85663 -10.42494 -10.36952 -10.23640 -10.16795 -9.82730 -9.75109 -9.23880 -9.02631 -8.76135 -8.42092 -8.36770 -6.89785 -5.82173 -3.16675 0.45737 0.89159 1.89811 2.34553 2.57409 3.08345 3.29188 3.36946 3.41945 3.44056 3.94245 4.05975 4.20411 4.27011 4.44167 4.46059 4.55928 4.67726 4.83837 4.89957 5.02859 5.09850 5.13438 5.26827 5.34056 5.35615 5.52830 5.54640 5.63611 5.78012 5.80182 5.86680 5.89996 6.01816 6.12359 6.20280 6.25710 6.49417 6.66940 6.75942 6.77034 6.86617 7.31731 7.49870 7.52853 7.68732 8.17749 8.23813 9.08329 9.71008 10.47849 11.32207 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.001939 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.599673 B =14438.804412 C =15321.451076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.180 4.180 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.102 0.898 15 C 0.155 3.845 16 C 0.095 3.905 17 H 0.130 0.870 18 N -0.699 5.699 19 C 0.512 3.488 20 O -0.528 6.528 21 C -0.070 4.070 22 C -0.152 4.152 23 C 0.023 3.977 24 O -0.187 6.187 25 C 0.079 3.921 26 C -0.146 4.146 27 C 0.124 3.876 28 F -0.132 7.132 29 C -0.166 4.166 30 C -0.035 4.035 31 C -0.122 4.122 32 H 0.255 0.745 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.051 0.949 36 H 0.027 0.973 37 H 0.399 0.601 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.211 0.789 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 -23.658 -8.205 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.059 3.941 11 C -0.201 4.201 12 H 0.121 0.879 13 C -0.203 4.203 14 H 0.120 0.880 15 C 0.028 3.972 16 C -0.010 4.010 17 H 0.148 0.852 18 N -0.348 5.348 19 C 0.298 3.702 20 O -0.403 6.403 21 C -0.110 4.110 22 C -0.153 4.153 23 C -0.042 4.042 24 O -0.088 6.088 25 C 0.031 3.969 26 C -0.165 4.165 27 C 0.105 3.895 28 F -0.111 7.111 29 C -0.185 4.185 30 C -0.053 4.053 31 C -0.123 4.123 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.232 0.768 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.227 0.773 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.794 -23.656 -7.133 25.908 hybrid contribution 0.467 0.947 -0.568 1.199 sum -7.327 -22.708 -7.701 25.073 Atomic orbital electron populations 1.69892 1.05063 1.25484 1.55682 1.24912 0.95659 0.98020 1.01705 0.86098 0.78707 0.83203 0.77616 1.21505 1.21625 1.20518 1.18999 0.90831 0.82271 1.43451 0.90492 1.45180 1.13338 1.00006 1.73136 1.21069 0.86960 0.92443 0.93677 1.24625 1.02321 0.92583 1.00554 0.87912 1.24343 0.90474 1.02484 1.03029 0.87970 1.21130 0.97220 0.85851 0.92966 1.21845 0.98475 0.84965 0.95753 0.85191 1.45390 1.58518 1.18075 1.12785 1.20477 0.77734 0.83113 0.88889 1.90749 1.52386 1.79873 1.17277 1.19994 1.01429 0.92194 0.97341 1.20359 0.91557 0.97885 1.05536 1.23746 0.93441 0.91886 0.95149 1.84024 1.14220 1.47100 1.63461 1.18996 0.85799 0.93017 0.99095 1.19582 0.87716 1.02976 1.06216 1.17084 0.79280 0.95000 0.98170 1.91525 1.38838 1.92445 1.88273 1.20758 0.98837 0.97244 1.01636 1.20116 0.89928 0.98044 0.97237 1.19749 0.93760 0.96594 1.02201 0.93501 0.89056 0.95657 0.93018 0.95482 0.76752 0.87482 0.87597 0.77300 0.83796 0.83932 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.86 55.49 0.60 -26.04 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.74 29.56 -169.99 -5.03 16.72 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.08 3.38 -168.82 -0.57 -15.65 16 10 C 0.18 4.38 5.70 -2.40 -0.01 4.37 16 11 C -0.18 -3.26 7.05 -89.30 -0.63 -3.89 16 12 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 13 C -0.18 -3.13 7.05 -89.27 -0.63 -3.75 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 C 0.16 3.24 7.04 -2.38 -0.02 3.23 16 16 C 0.10 1.54 5.98 -67.93 -0.41 1.13 16 17 H 0.13 2.46 7.40 -51.93 -0.38 2.07 16 18 N -0.70 -8.31 5.56 -53.81 -0.30 -8.61 16 19 C 0.51 6.32 7.82 -10.98 -0.09 6.23 16 20 O -0.53 -9.10 15.60 5.56 0.09 -9.01 16 21 C -0.07 -0.54 6.25 -29.03 -0.18 -0.72 16 22 C -0.15 -1.50 4.85 -102.66 -0.50 -1.99 16 23 C 0.02 0.20 11.89 29.23 0.35 0.55 16 24 O -0.19 -2.02 10.58 3.83 0.04 -1.98 16 25 C 0.08 0.88 7.42 -38.48 -0.29 0.60 16 26 C -0.15 -1.46 10.04 -39.39 -0.40 -1.85 16 27 C 0.12 1.24 7.28 -39.39 -0.29 0.95 16 28 F -0.13 -1.34 17.25 2.25 0.04 -1.30 16 29 C -0.17 -1.54 9.96 -39.87 -0.40 -1.94 16 30 C -0.04 -0.35 10.05 -39.70 -0.40 -0.75 16 31 C -0.12 -1.36 6.38 -105.15 -0.67 -2.03 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 3.43 8.83 -40.82 -0.36 3.07 16 38 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.21 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -34.36 372.76 -9.59 -43.95 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.28 Total: 2.85 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -4.80 Total: -6.55 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.27 Total: -50.30 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.13 Total: -10.99 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.36 -9.59 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959846434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.785 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds