Wall clock time and date at job start Wed Apr 1 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00006 * 2 1 4 4 H 1.48503 * 109.46989 * 269.99877 * 3 2 1 5 5 H 1.48508 * 109.46992 * 29.99586 * 3 2 1 6 6 H 1.48495 * 109.47244 * 149.99595 * 3 2 1 7 7 C 1.38816 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99697 * 189.10204 * 7 2 1 9 9 N 1.36930 * 119.99674 * 9.10318 * 7 2 1 10 10 C 1.48148 * 127.84080 * 15.57192 * 9 7 2 11 11 C 1.54394 * 104.61729 * 140.41574 * 10 9 7 12 12 H 1.09001 * 117.60868 * 242.76360 * 11 10 9 13 13 C 1.54141 * 104.96499 * 23.82864 * 11 10 9 14 14 H 1.08996 * 121.79033 * 222.19676 * 13 11 10 15 15 C 1.48151 * 127.83803 * 195.57172 * 9 7 2 16 16 C 1.52996 * 118.12267 * 87.19256 * 11 10 9 17 17 H 1.09001 * 117.44679 * 16.06279 * 16 11 10 18 18 N 1.46495 * 117.44054 * 160.80644 * 16 11 10 19 19 C 1.34782 * 120.00187 * 205.16253 * 18 16 11 20 20 O 1.21282 * 119.99394 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00196 * 180.02562 * 19 18 16 22 22 C 1.50703 * 109.47025 * 180.02562 * 21 19 18 23 23 C 1.33970 * 126.90307 * 264.97477 * 22 21 19 24 24 O 1.34476 * 110.15381 * 180.02562 * 23 22 21 25 25 C 1.34812 * 110.88764 * 0.02562 * 24 23 22 26 26 C 1.38929 * 133.47062 * 179.97438 * 25 24 23 27 27 C 1.38051 * 119.80105 * 179.97438 * 26 25 24 28 28 F 1.35098 * 119.68634 * 179.97438 * 27 26 25 29 29 C 1.38940 * 120.63103 * 359.97438 * 27 26 25 30 30 C 1.36721 * 120.39288 * 0.03030 * 29 27 26 31 31 C 1.39406 * 119.74904 * 359.96502 * 30 29 27 32 32 H 0.96998 * 120.00317 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.40776 * 21.63199 * 10 9 7 34 34 H 1.08999 * 110.40665 * 259.20164 * 10 9 7 35 35 H 1.09004 * 110.40350 * 338.36844 * 15 9 7 36 36 H 1.08997 * 110.40839 * 100.68060 * 15 9 7 37 37 H 0.97004 * 120.00345 * 25.16872 * 18 16 11 38 38 H 1.08996 * 109.47258 * 60.00326 * 21 19 18 39 39 H 1.09004 * 109.47229 * 300.00148 * 21 19 18 40 40 H 1.07997 * 124.92217 * 0.03583 * 23 22 21 41 41 H 1.08007 * 120.09901 * 0.02566 * 26 25 24 42 42 H 1.07999 * 119.81091 * 179.97438 * 29 27 26 43 43 H 1.08002 * 120.12896 * 179.70422 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3385 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7103 11 6 0.0639 -3.8173 -1.6163 12 1 -0.1483 -3.6883 -2.6776 13 6 1.2856 -4.5965 -1.0906 14 1 2.0088 -5.0539 -1.7656 15 6 1.8196 -3.7545 0.0888 16 6 -0.1183 -5.1932 -0.9723 17 1 -0.5675 -5.2278 0.0202 18 7 -0.4525 -6.3131 -1.8557 19 6 -1.1060 -7.3855 -1.3664 20 8 -1.4177 -7.4231 -0.1949 21 6 -1.4493 -8.5378 -2.2749 22 6 -2.1729 -9.5998 -1.4878 23 6 -1.6330 -10.6818 -0.9111 24 8 -2.5864 -11.4032 -0.2955 25 6 -3.7958 -10.8258 -0.4420 26 6 -5.0732 -11.1604 -0.0104 27 6 -6.1406 -10.3449 -0.3289 28 9 -7.3819 -10.6727 0.0916 29 6 -5.9504 -9.1901 -1.0776 30 6 -4.7006 -8.8447 -1.5111 31 6 -3.6112 -9.6566 -1.1987 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3432 -1.7022 -1.2913 34 1 -0.7317 -2.7499 0.1080 35 1 2.9092 -3.7784 0.1106 36 1 1.4133 -4.1174 1.0329 37 1 -0.2034 -6.2828 -2.7927 38 1 -0.5338 -8.9558 -2.6935 39 1 -2.0903 -8.1849 -3.0830 40 1 -0.5840 -10.9375 -0.9367 41 1 -5.2307 -12.0555 0.5732 42 1 -6.7949 -8.5618 -1.3195 43 1 -4.5583 -7.9486 -2.0970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959846434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:30 Heat of formation + Delta-G solvation = -7.646745 kcal Electronic energy + Delta-G solvation = -28266.732532 eV Core-core repulsion = 24000.998154 eV Total energy + Delta-G solvation = -4265.734378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.02598 -43.52714 -41.05841 -39.75610 -38.68327 -36.07181 -34.90468 -34.28829 -32.22003 -31.77567 -30.56545 -28.98388 -28.86924 -27.44336 -24.65634 -23.81444 -23.42281 -22.16015 -21.88052 -20.91027 -20.81683 -18.90011 -18.84853 -18.51479 -18.04382 -17.72359 -17.48969 -17.18149 -16.73619 -16.49400 -16.14020 -16.01535 -15.68298 -15.39261 -15.16587 -14.87049 -14.72441 -14.62204 -13.98511 -13.85025 -13.71679 -13.54134 -13.28357 -13.20160 -12.98264 -12.87725 -12.71349 -12.57262 -12.12556 -12.04409 -12.02533 -11.86713 -11.64227 -11.21308 -10.89078 -10.77486 -10.64862 -9.77502 -9.66078 -9.12955 -8.93382 -7.92492 -5.29607 -0.26684 0.14022 1.18403 1.46900 1.48732 1.57808 1.62254 1.66509 2.11620 2.47417 2.51167 2.87901 3.22940 3.28459 3.39866 3.53048 3.60911 3.79322 3.85749 3.86822 3.92211 3.96696 4.15332 4.15973 4.24663 4.38283 4.40214 4.54181 4.62952 4.65523 4.84247 4.88230 4.93339 4.94453 4.99342 5.07252 5.19666 5.29502 5.38804 5.42608 5.45745 5.55255 5.58294 5.64493 6.04468 6.16029 6.61890 6.99543 7.33041 7.66512 8.44871 9.21414 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.001939 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.599673 B =14438.804412 C =15321.451076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.618 5.618 10 C 0.187 3.813 11 C -0.179 4.179 12 H 0.130 0.870 13 C -0.163 4.163 14 H 0.139 0.861 15 C 0.146 3.854 16 C 0.118 3.882 17 H 0.098 0.902 18 N -0.682 5.682 19 C 0.512 3.488 20 O -0.582 6.582 21 C -0.056 4.056 22 C -0.172 4.172 23 C 0.026 3.974 24 O -0.200 6.200 25 C 0.053 3.947 26 C -0.150 4.150 27 C 0.111 3.889 28 F -0.136 7.136 29 C -0.166 4.166 30 C -0.046 4.046 31 C -0.139 4.139 32 H 0.250 0.750 33 H 0.059 0.941 34 H -0.009 1.009 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.421 0.579 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.248 0.752 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -25.048 -10.474 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.342 5.342 10 C 0.061 3.939 11 C -0.200 4.200 12 H 0.148 0.852 13 C -0.184 4.184 14 H 0.157 0.843 15 C 0.021 3.979 16 C 0.011 3.989 17 H 0.116 0.884 18 N -0.333 5.333 19 C 0.301 3.699 20 O -0.461 6.461 21 C -0.095 4.095 22 C -0.174 4.174 23 C -0.038 4.038 24 O -0.101 6.101 25 C 0.006 3.994 26 C -0.170 4.170 27 C 0.092 3.908 28 F -0.114 7.114 29 C -0.185 4.185 30 C -0.064 4.064 31 C -0.140 4.140 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.009 0.991 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.259 0.741 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.264 0.736 41 H 0.174 0.826 42 H 0.179 0.821 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.197 -25.092 -9.449 27.519 hybrid contribution -0.046 1.308 0.235 1.330 sum -6.243 -23.784 -9.214 26.259 Atomic orbital electron populations 1.70100 1.06614 1.25802 1.57155 1.25786 0.96511 1.01433 1.02043 0.85025 0.77671 0.78632 0.77661 1.20875 1.22259 1.19176 1.19405 0.91413 0.83465 1.42634 0.89899 1.45503 1.13807 1.01174 1.73717 1.20802 0.85927 0.94019 0.93135 1.24295 1.03984 0.91048 1.00680 0.85206 1.24241 0.91088 1.01716 1.01387 0.84294 1.21275 0.98005 0.84494 0.94141 1.21293 0.97324 0.85306 0.95004 0.88423 1.45178 1.58264 1.16577 1.13278 1.21358 0.76152 0.83684 0.88735 1.90746 1.54382 1.80918 1.20051 1.20068 1.03617 0.89549 0.96249 1.20680 0.91059 0.98981 1.06688 1.24564 0.94458 0.91315 0.93503 1.84014 1.14447 1.47722 1.63885 1.19254 0.86292 0.93765 1.00118 1.19784 0.87623 1.03453 1.06104 1.17232 0.79204 0.95568 0.98828 1.91512 1.38989 1.92535 1.88403 1.21021 0.99487 0.97060 1.00890 1.20372 0.89841 0.98569 0.97642 1.20158 0.95036 0.96663 1.02185 0.94092 0.92287 0.99087 0.91818 0.96771 0.74104 0.83196 0.84930 0.73640 0.82572 0.82051 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 10.86 21.65 0.24 -57.03 16 2 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 3 Si 0.98 45.21 29.56 68.60 2.03 47.23 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.24 -13.45 10.35 84.04 0.87 -12.58 16 8 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 9 N -0.62 -31.98 3.38 -688.03 -2.32 -34.30 16 10 C 0.19 9.20 5.70 86.54 0.49 9.69 16 11 C -0.18 -6.27 7.05 -9.94 -0.07 -6.34 16 12 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 13 C -0.16 -5.22 7.05 -9.92 -0.07 -5.29 16 14 H 0.14 3.51 8.14 -2.39 -0.02 3.49 16 15 C 0.15 6.07 7.04 86.55 0.61 6.68 16 16 C 0.12 3.63 5.98 44.99 0.27 3.90 16 17 H 0.10 3.75 7.40 -2.39 -0.02 3.74 16 18 N -0.68 -13.84 5.56 -442.54 -2.46 -16.30 16 19 C 0.51 11.16 7.82 87.66 0.69 11.85 16 20 O -0.58 -19.55 15.60 -3.04 -0.05 -19.60 16 21 C -0.06 -0.62 6.25 29.10 0.18 -0.44 16 22 C -0.17 -2.97 4.85 -18.59 -0.09 -3.06 16 23 C 0.03 0.40 11.89 66.85 0.79 1.19 16 24 O -0.20 -4.12 10.58 -9.22 -0.10 -4.22 16 25 C 0.05 1.18 7.42 22.99 0.17 1.35 16 26 C -0.15 -3.03 10.04 22.39 0.22 -2.80 16 27 C 0.11 2.21 7.28 22.39 0.16 2.38 16 28 F -0.14 -2.75 17.25 44.97 0.78 -1.97 16 29 C -0.17 -2.98 9.96 22.08 0.22 -2.76 16 30 C -0.05 -0.87 10.05 22.20 0.22 -0.64 16 31 C -0.14 -2.96 6.38 -20.20 -0.13 -3.09 16 32 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.06 3.25 6.51 -2.39 -0.02 3.24 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.42 5.06 8.83 -92.71 -0.82 4.25 16 38 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.25 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -79.71 372.76 3.36 -76.35 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.25 Total: 12.98 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.00 Total: -3.15 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -4.55 Total: -107.63 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.14 Total: -23.81 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -79.71 3.36 -76.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959846434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.703 kcal (2) G-P(sol) polarization free energy of solvation -79.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds