Wall clock time and date at job start Wed Apr 1 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00107 * 2 1 4 4 H 1.48502 * 109.47091 * 240.00258 * 3 2 1 5 5 H 1.48499 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47078 * 120.00485 * 3 2 1 7 7 C 1.38817 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99820 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.46654 * 125.33369 * 179.97438 * 9 7 2 11 11 C 1.53679 * 107.97141 * 179.31173 * 10 9 7 12 12 H 1.09001 * 112.77271 * 220.11506 * 11 10 9 13 13 C 1.53976 * 109.29521 * 93.07021 * 11 10 9 14 14 N 1.46763 * 106.67501 * 221.16185 * 13 11 10 15 15 C 1.34776 * 125.33405 * 198.41210 * 14 13 11 16 16 O 1.21644 * 119.99749 * 174.55234 * 15 14 13 17 17 C 1.47073 * 120.00074 * 354.54703 * 15 14 13 18 18 C 1.36033 * 127.14346 * 335.68762 * 17 15 14 19 19 O 1.33830 * 109.85436 * 179.86136 * 18 17 15 20 20 C 1.34918 * 111.34727 * 0.42010 * 19 18 17 21 21 C 1.38957 * 133.08872 * 179.69914 * 20 19 18 22 22 C 1.38040 * 119.95332 * 180.02562 * 21 20 19 23 23 F 1.35099 * 119.70000 * 180.02562 * 22 21 20 24 24 C 1.38893 * 120.59962 * 0.04825 * 22 21 20 25 25 C 1.37812 * 120.17798 * 359.97124 * 24 22 21 26 26 C 1.39111 * 119.65910 * 0.02562 * 25 24 22 27 27 C 1.46655 * 109.32826 * 18.45511 * 14 13 11 28 28 C 1.53678 * 107.97378 * 359.28507 * 27 14 13 29 29 H 1.09004 * 113.31590 * 219.80072 * 28 27 14 30 30 C 1.46758 * 125.33585 * 0.02562 * 9 7 2 31 31 H 0.97000 * 119.99602 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.76890 * 59.68678 * 10 9 7 33 33 H 1.08998 * 109.77281 * 298.93958 * 10 9 7 34 34 H 1.08997 * 110.01861 * 340.46803 * 13 11 10 35 35 H 1.09001 * 110.01971 * 101.86495 * 13 11 10 36 36 H 1.07996 * 125.06951 * 0.02562 * 18 17 15 37 37 H 1.08002 * 120.02227 * 0.03447 * 21 20 19 38 38 H 1.08000 * 119.91104 * 179.97438 * 24 22 21 39 39 H 1.08001 * 120.16733 * 180.02562 * 25 24 22 40 40 H 1.09004 * 109.76487 * 239.65482 * 27 14 13 41 41 H 1.08995 * 109.77172 * 118.92038 * 27 14 13 42 42 H 1.08998 * 110.01437 * 317.73207 * 30 9 7 43 43 H 1.08995 * 110.02020 * 79.12408 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9374 -3.7208 -0.0016 11 6 0.8070 -4.7617 0.0164 12 1 1.0247 -5.6100 0.6653 13 6 0.4684 -5.1702 -1.4291 14 7 -0.9941 -5.2636 -1.5088 15 6 -1.6824 -5.9170 -2.4657 16 8 -2.8920 -6.0165 -2.3842 17 6 -0.9711 -6.5096 -3.6085 18 6 0.2382 -6.1356 -4.1068 19 8 0.5597 -6.9109 -5.1492 20 6 -0.4050 -7.8198 -5.4013 21 6 -0.5408 -8.8198 -6.3565 22 6 -1.6701 -9.6135 -6.3677 23 9 -1.7966 -10.5846 -7.2983 24 6 -2.6779 -9.4224 -5.4311 25 6 -2.5590 -8.4348 -4.4773 26 6 -1.4247 -7.6297 -4.4577 27 6 -1.5890 -4.5336 -0.3846 28 6 -0.4455 -3.9590 0.4661 29 1 -0.6306 -4.0241 1.5384 30 6 -0.1357 -2.5245 -0.0005 31 1 -0.4849 0.8401 0.0004 32 1 2.5625 -3.8402 0.8834 33 1 2.5417 -3.8484 -0.8998 34 1 0.8326 -4.4147 -2.1253 35 1 0.9170 -6.1368 -1.6585 36 1 0.8488 -5.3344 -3.7176 37 1 0.2368 -8.9761 -7.0895 38 1 -3.5569 -10.0496 -5.4503 39 1 -3.3425 -8.2866 -3.7489 40 1 -2.1917 -5.2128 0.2184 41 1 -2.2125 -3.7224 -0.7603 42 1 -0.5776 -1.8045 0.6883 43 1 -0.5252 -2.3668 -1.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048909801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:48 Heat of formation + Delta-G solvation = -7.150200 kcal Electronic energy + Delta-G solvation = -29587.809883 eV Core-core repulsion = 25322.097037 eV Total energy + Delta-G solvation = -4265.712846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.28411 -42.92517 -40.20507 -38.23340 -37.94648 -35.09686 -33.23610 -32.30265 -31.01195 -30.55141 -29.60394 -29.12303 -25.87071 -25.66894 -24.28361 -23.73103 -22.64937 -22.03135 -20.30311 -19.63508 -19.41006 -18.42707 -17.62551 -16.97049 -16.95298 -16.77971 -16.36345 -15.88488 -15.77293 -15.36105 -15.28744 -14.81950 -14.38334 -14.23684 -14.04101 -13.74553 -13.39906 -13.28651 -13.05334 -12.80145 -12.51214 -12.27590 -12.08736 -11.91323 -11.83745 -11.47600 -11.44578 -11.01651 -10.85698 -10.58822 -10.40272 -10.19971 -10.16447 -9.94990 -9.90012 -9.65088 -9.09906 -8.70882 -8.57767 -8.44909 -6.93896 -5.76393 -3.16311 0.36052 0.80133 1.46761 2.19805 2.92011 3.01785 3.33572 3.35028 3.39781 3.41218 3.92228 4.06787 4.22105 4.41171 4.49114 4.54152 4.63167 4.74192 4.81838 4.98987 5.08066 5.11086 5.40928 5.43416 5.45804 5.52439 5.55536 5.57297 5.70230 5.76397 5.80711 5.87555 5.96269 6.07948 6.14938 6.19209 6.23015 6.42940 6.44052 6.54053 6.65188 6.73135 7.39837 7.54289 7.56479 7.74625 8.17322 8.23824 9.13399 9.73982 10.36167 11.29646 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002459 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.401771 B =11382.193869 C =11877.469332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.108 4.108 12 H 0.091 0.909 13 C 0.102 3.898 14 N -0.603 5.603 15 C 0.600 3.400 16 O -0.537 6.537 17 C -0.215 4.215 18 C 0.067 3.933 19 O -0.178 6.178 20 C 0.074 3.926 21 C -0.143 4.143 22 C 0.125 3.875 23 F -0.131 7.131 24 C -0.165 4.165 25 C -0.029 4.029 26 C -0.101 4.101 27 C 0.123 3.877 28 C -0.122 4.122 29 H 0.095 0.905 30 C 0.168 3.832 31 H 0.254 0.746 32 H 0.027 0.973 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.225 0.775 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 -18.195 -8.056 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.127 4.127 12 H 0.110 0.890 13 C -0.021 4.021 14 N -0.336 5.336 15 C 0.389 3.611 16 O -0.416 6.416 17 C -0.219 4.219 18 C -0.001 4.001 19 O -0.077 6.077 20 C 0.027 3.973 21 C -0.163 4.163 22 C 0.106 3.894 23 F -0.110 7.110 24 C -0.183 4.183 25 C -0.047 4.047 26 C -0.102 4.102 27 C 0.000 4.000 28 C -0.142 4.142 29 H 0.113 0.887 30 C 0.043 3.957 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.241 0.759 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.754 -18.067 -8.272 19.948 hybrid contribution 0.506 0.839 -0.145 0.990 sum -1.248 -17.228 -8.416 19.215 Atomic orbital electron populations 1.69851 1.04892 1.25184 1.56932 1.24805 0.95734 0.97796 1.02011 0.86163 0.78436 0.83008 0.77922 1.21176 1.21558 1.21089 1.18996 0.90483 0.82293 1.44015 0.90407 1.44241 1.01629 0.99832 1.87119 1.21081 0.93152 0.85531 0.98376 1.22796 0.97332 0.98407 0.94204 0.89029 1.22376 0.80155 1.00736 0.98832 1.48104 1.07616 1.51689 1.26161 1.16611 0.86066 0.77854 0.80557 1.90782 1.13353 1.59982 1.77485 1.20909 0.97289 1.01955 1.01793 1.25014 0.95360 0.93979 0.85702 1.83908 1.41354 1.38548 1.43900 1.19014 0.87877 0.92994 0.97439 1.19582 0.99735 0.96156 1.00788 1.17071 0.94863 0.88348 0.89166 1.91529 1.95952 1.60056 1.63454 1.21073 0.99834 1.01209 0.96232 1.20506 0.95836 0.91413 0.96948 1.19459 0.96442 0.97833 0.96511 1.21781 0.96155 0.95287 0.86732 1.23255 0.92329 0.99306 0.99310 0.88664 1.21564 0.84735 0.89715 0.99648 0.93550 0.95526 0.95713 0.90673 0.91085 0.75891 0.83523 0.83714 0.83481 0.91873 0.90630 0.88775 0.96221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.77 10.16 55.49 0.56 -25.21 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.01 10.25 -15.06 -0.15 -6.17 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.07 3.38 -171.88 -0.58 -14.65 16 10 C 0.15 2.62 6.58 -3.61 -0.02 2.60 16 11 C -0.11 -1.59 4.10 -88.48 -0.36 -1.95 16 12 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 13 C 0.10 1.35 4.44 -3.39 -0.02 1.34 16 14 N -0.60 -9.13 3.31 -173.73 -0.58 -9.70 16 15 C 0.60 9.55 7.79 -12.68 -0.10 9.45 16 16 O -0.54 -10.04 17.20 5.24 0.09 -9.95 16 17 C -0.22 -2.90 5.97 -103.24 -0.62 -3.52 16 18 C 0.07 0.75 10.34 29.94 0.31 1.06 16 19 O -0.18 -2.03 10.53 5.25 0.06 -1.97 16 20 C 0.07 0.86 7.39 -38.57 -0.28 0.57 16 21 C -0.14 -1.41 10.03 -39.39 -0.40 -1.80 16 22 C 0.12 1.22 7.28 -39.41 -0.29 0.93 16 23 F -0.13 -1.28 17.25 2.25 0.04 -1.24 16 24 C -0.16 -1.55 10.01 -39.49 -0.40 -1.94 16 25 C -0.03 -0.33 10.06 -39.41 -0.40 -0.72 16 26 C -0.10 -1.29 6.32 -104.96 -0.66 -1.95 16 27 C 0.12 1.95 6.19 -3.61 -0.02 1.93 16 28 C -0.12 -2.04 4.10 -88.47 -0.36 -2.40 16 29 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 30 C 0.17 3.73 4.87 -3.38 -0.02 3.71 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.03 0.43 7.63 -51.93 -0.40 0.03 16 34 H 0.08 1.04 6.32 -51.93 -0.33 0.72 16 35 H 0.07 0.76 7.27 -51.93 -0.38 0.38 16 36 H 0.23 2.03 5.67 -52.49 -0.30 1.73 16 37 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 1.65 7.92 -52.49 -0.42 1.24 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.08 1.32 7.63 -51.93 -0.40 0.92 16 42 H 0.09 2.41 6.19 -51.93 -0.32 2.09 16 43 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -30.99 354.91 -8.97 -39.96 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.01 Total: 0.34 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.88 Total: 0.83 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.59 Total: -49.56 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.15 Total: -11.92 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.99 -8.97 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048909801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.812 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds