Wall clock time and date at job start Wed Apr 1 2020 03:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00184 * 2 1 4 4 H 1.48501 * 109.46920 * 5.41436 * 3 2 1 5 5 H 1.48499 * 109.47033 * 125.41391 * 3 2 1 6 6 H 1.48497 * 109.47253 * 245.41423 * 3 2 1 7 7 C 1.38819 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99908 * 5.48345 * 7 2 1 9 9 N 1.36934 * 119.99831 * 185.48818 * 7 2 1 10 10 C 1.47162 * 135.99636 * 353.44877 * 9 7 2 11 11 C 1.52641 * 87.95083 * 206.71878 * 10 9 7 12 12 C 1.47172 * 136.00336 * 173.81655 * 9 7 2 13 13 C 1.52785 * 114.15558 * 220.84503 * 11 10 9 14 14 N 1.47365 * 108.05387 * 179.02520 * 13 11 10 15 15 C 1.34775 * 121.06331 * 228.20500 * 14 13 11 16 16 O 1.21564 * 119.99986 * 185.28157 * 15 14 13 17 17 C 1.47800 * 120.00393 * 5.28487 * 15 14 13 18 18 C 1.41159 * 118.94607 * 32.60051 * 17 15 14 19 19 C 1.35399 * 121.75948 * 179.97438 * 18 17 15 20 20 C 1.45290 * 119.09938 * 0.02562 * 19 18 17 21 21 N 1.30884 * 138.53842 * 180.02562 * 20 19 18 22 22 O 1.21491 * 109.07151 * 179.97438 * 21 20 19 23 23 N 1.21472 * 116.30260 * 359.97438 * 22 21 20 24 24 C 1.31067 * 109.07693 * 0.02562 * 23 22 21 25 25 C 1.37768 * 118.95058 * 212.33518 * 17 15 14 26 26 C 1.47113 * 117.87200 * 48.23082 * 14 13 11 27 27 C 1.53232 * 108.74342 * 307.68978 * 26 14 13 28 28 O 1.42392 * 114.12942 * 88.43104 * 11 10 9 29 29 H 0.96997 * 119.99917 * 174.97765 * 1 2 3 30 30 H 1.08998 * 113.49063 * 321.42075 * 10 9 7 31 31 H 1.09002 * 113.48962 * 91.93455 * 10 9 7 32 32 H 1.08999 * 113.49071 * 268.07887 * 12 9 7 33 33 H 1.09002 * 113.48608 * 38.52256 * 12 9 7 34 34 H 1.09007 * 109.74184 * 298.66451 * 13 11 10 35 35 H 1.08996 * 109.74224 * 59.33244 * 13 11 10 36 36 H 1.07990 * 119.11854 * 359.96126 * 18 17 15 37 37 H 1.07999 * 120.44621 * 180.02562 * 19 18 17 38 38 H 1.07996 * 120.14430 * 0.02562 * 25 17 15 39 39 H 1.08996 * 109.59754 * 67.46688 * 26 14 13 40 40 H 1.09005 * 109.59636 * 187.91881 * 26 14 13 41 41 H 1.08996 * 109.49294 * 174.18151 * 27 26 14 42 42 H 1.09000 * 109.49283 * 294.23209 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2907 2.7433 0.1321 5 1 3.2004 1.6406 1.1410 6 1 3.0022 1.7551 -1.2731 7 6 2.0103 -1.2022 -0.0005 8 1 1.4739 -2.1353 -0.0903 9 7 3.3749 -1.2050 0.1129 10 6 4.4375 -0.1871 0.1335 11 6 5.3906 -1.2499 -0.4066 12 6 4.4229 -2.2276 0.2611 13 6 6.7809 -1.2227 0.2264 14 7 7.5762 -2.3100 -0.3711 15 6 8.2823 -3.1600 0.4005 16 8 9.0071 -3.9891 -0.1145 17 6 8.1756 -3.0842 1.8727 18 6 6.9479 -2.6934 2.4494 19 6 6.7867 -2.6054 3.7909 20 6 7.9078 -2.9213 4.6595 21 7 8.1742 -2.9656 5.9402 22 8 9.3284 -3.3125 6.0938 23 7 9.9626 -3.5352 5.0820 24 6 9.1936 -3.3309 4.0406 25 6 9.2758 -3.4026 2.6383 26 6 7.5750 -2.4376 -1.8367 27 6 6.1236 -2.4793 -2.3262 28 8 5.4222 -1.3356 -1.8276 29 1 -0.4850 -0.8368 -0.0735 30 1 4.2658 0.6343 -0.5622 31 1 4.6919 0.1552 1.1366 32 1 4.6731 -2.4459 1.2993 33 1 4.2383 -3.1271 -0.3262 34 1 7.2584 -0.2637 0.0250 35 1 6.6985 -1.3741 1.3026 36 1 6.1151 -2.4581 1.8035 37 1 5.8377 -2.3045 4.2095 38 1 10.1986 -3.7016 2.1637 39 1 8.0853 -1.5819 -2.2786 40 1 8.0840 -3.3577 -2.1239 41 1 6.1068 -2.4696 -3.4159 42 1 5.6432 -3.3879 -1.9631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053403063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:18 Heat of formation + Delta-G solvation = 180.497016 kcal Electronic energy + Delta-G solvation = -30746.800739 eV Core-core repulsion = 26509.144848 eV Total energy + Delta-G solvation = -4237.655891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -47.02824 -41.37949 -39.62664 -38.32834 -36.68829 -35.28786 -35.09073 -33.66567 -32.56484 -31.57538 -30.64290 -28.60304 -26.84795 -26.35814 -25.86033 -25.21610 -23.41818 -21.89495 -21.71414 -20.79847 -19.57247 -19.29535 -19.22641 -18.35283 -17.62686 -17.28001 -16.95889 -16.27164 -15.91442 -15.45875 -15.11500 -14.90676 -14.82427 -14.60919 -14.23572 -14.07837 -13.87657 -13.68490 -13.38974 -13.26653 -13.18245 -12.80459 -12.25585 -12.19649 -12.07399 -11.94774 -11.62812 -11.36826 -11.28196 -10.95142 -10.67862 -10.58783 -10.43175 -10.08392 -9.93986 -9.33481 -9.24020 -9.06104 -9.00852 -8.69268 -7.28839 -6.40594 -3.33808 -0.54038 0.49030 1.42458 2.16673 2.34872 2.75242 2.94633 2.99974 3.29288 3.30934 3.38568 3.55148 3.67107 3.88325 4.17937 4.26307 4.36152 4.45389 4.51290 4.57520 4.71824 4.72921 4.77010 4.93433 5.05058 5.10184 5.22631 5.31273 5.36796 5.38867 5.44808 5.55596 5.60513 5.68125 5.77866 5.85883 5.89451 6.02108 6.05150 6.11323 6.25719 6.89986 6.94174 7.33153 7.68334 8.03961 8.14052 8.86985 9.38223 10.19300 11.11737 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.003792 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.109565 B = 7382.801534 C = 9069.079012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.021 4.021 3 Si 1.067 2.933 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.306 4.306 8 H 0.084 0.916 9 N -0.611 5.611 10 C 0.110 3.890 11 C 0.058 3.942 12 C 0.097 3.903 13 C 0.055 3.945 14 N -0.600 5.600 15 C 0.564 3.436 16 O -0.529 6.529 17 C -0.089 4.089 18 C -0.106 4.106 19 C -0.051 4.051 20 C 0.024 3.976 21 N -0.338 5.338 22 O 0.378 5.622 23 N -0.334 5.334 24 C 0.013 3.987 25 C -0.004 4.004 26 C 0.079 3.921 27 C 0.045 3.955 28 O -0.332 6.332 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.565 -4.563 3.889 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.220 4.220 3 Si 0.899 3.101 4 H -0.221 1.221 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.431 4.431 8 H 0.102 0.898 9 N -0.339 5.339 10 C -0.016 4.016 11 C 0.015 3.985 12 C -0.030 4.030 13 C -0.068 4.068 14 N -0.333 5.333 15 C 0.352 3.648 16 O -0.406 6.406 17 C -0.097 4.097 18 C -0.127 4.127 19 C -0.071 4.071 20 C -0.130 4.130 21 N -0.059 5.059 22 O 0.139 5.861 23 N -0.054 5.054 24 C -0.140 4.140 25 C -0.025 4.025 26 C -0.043 4.043 27 C -0.033 4.033 28 O -0.250 6.250 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.193 0.807 37 H 0.178 0.822 38 H 0.175 0.825 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.846 -3.351 4.573 20.639 hybrid contribution -0.095 -1.812 -0.714 1.950 sum 19.750 -5.162 3.859 20.776 Atomic orbital electron populations 1.70923 1.05318 1.29509 1.51538 1.25739 0.96419 1.00944 0.98865 0.83750 0.73991 0.76048 0.76267 1.22050 1.21309 1.21697 1.20104 0.77506 0.95832 1.49700 0.89837 1.45732 1.01320 1.00964 1.85845 1.22711 0.86420 0.94017 0.98423 1.23104 0.91177 1.01327 0.82860 1.22971 0.88457 0.94610 0.96978 1.23285 0.91749 0.90803 1.00928 1.48007 1.47542 1.30490 1.07235 1.18022 0.79838 0.81058 0.85908 1.90810 1.38520 1.36879 1.74441 1.19749 0.94201 1.01894 0.93810 1.21906 0.98280 0.97015 0.95459 1.20996 0.95866 0.99622 0.90614 1.24177 0.97546 1.02629 0.88665 1.75235 0.97421 1.15959 1.17306 1.85425 1.15380 1.55745 1.29566 1.75277 1.19558 1.16848 0.93704 1.22637 0.90588 1.04172 0.96590 1.20108 0.99652 0.95573 0.87170 1.22390 0.98729 1.04395 0.78805 1.22985 0.90064 0.90210 0.99992 1.88032 1.74933 1.44003 1.18010 0.92816 0.91343 0.91858 0.93842 0.92854 0.89531 0.85958 0.80655 0.82217 0.82506 0.90125 0.87894 0.87354 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.70 55.49 0.76 -27.73 16 2 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16 3 Si 1.07 25.31 25.15 -169.99 -4.28 21.04 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -6.05 6.17 56.52 0.35 -5.70 16 6 H -0.29 -6.58 6.53 56.52 0.37 -6.21 16 7 C -0.31 -8.37 11.08 -15.06 -0.17 -8.54 16 8 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 9 N -0.61 -13.80 3.70 -184.99 -0.68 -14.48 16 10 C 0.11 2.06 5.09 -8.36 -0.04 2.02 16 11 C 0.06 0.88 1.28 -90.96 -0.12 0.77 16 12 C 0.10 1.66 7.63 -8.22 -0.06 1.60 16 13 C 0.06 0.62 5.25 -3.68 -0.02 0.60 16 14 N -0.60 -6.81 3.03 -173.61 -0.53 -7.33 16 15 C 0.56 6.76 7.39 -12.35 -0.09 6.67 16 16 O -0.53 -7.62 16.14 5.31 0.09 -7.54 16 17 C -0.09 -0.94 5.53 -105.05 -0.58 -1.52 16 18 C -0.11 -1.04 7.32 -39.49 -0.29 -1.32 16 19 C -0.05 -0.48 10.27 -37.79 -0.39 -0.87 16 20 C 0.02 0.27 7.94 -81.26 -0.65 -0.38 16 21 N -0.34 -3.78 12.28 32.75 0.40 -3.38 16 22 O 0.38 3.96 11.67 26.93 0.31 4.28 16 23 N -0.33 -3.68 12.29 31.87 0.39 -3.28 16 24 C 0.01 0.14 7.75 -83.07 -0.64 -0.50 16 25 C 0.00 -0.04 9.58 -38.84 -0.37 -0.41 16 26 C 0.08 0.83 6.58 -3.59 -0.02 0.80 16 27 C 0.05 0.54 6.90 37.28 0.26 0.80 16 28 O -0.33 -5.39 10.53 -35.23 -0.37 -5.76 16 29 H 0.26 7.92 8.73 -40.82 -0.36 7.57 16 30 H 0.07 1.39 4.72 -51.93 -0.25 1.14 16 31 H 0.06 1.05 7.60 -51.93 -0.39 0.65 16 32 H 0.04 0.65 5.52 -51.93 -0.29 0.36 16 33 H 0.05 0.95 7.37 -51.93 -0.38 0.56 16 34 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.12 1.22 3.12 -56.51 -0.18 1.04 16 36 H 0.18 1.80 2.17 -52.49 -0.11 1.68 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.16 1.45 7.86 -52.49 -0.41 1.04 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.05 7.10 -51.93 -0.37 0.68 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.73 7.31 -51.93 -0.38 0.35 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -33.18 335.44 -6.24 -39.42 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.11 Total: 0.68 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.28 Total: -0.97 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.34 Total: -56.21 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.03 Total: -9.02 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.28 Total: 21.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.18 -6.24 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053403063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.918 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds