Wall clock time and date at job start Wed Apr 1 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99888 * 2 1 4 4 C 1.50692 * 109.47140 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00536 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00039 * 180.02562 * 4 3 2 7 7 C 1.47669 * 134.45782 * 180.02562 * 6 4 3 8 8 C 1.53445 * 85.97918 * 155.74367 * 7 6 4 9 9 C 1.47673 * 134.45610 * 0.05645 * 6 4 3 10 10 C 1.52892 * 113.55600 * 137.63500 * 8 7 6 11 11 N 1.47342 * 108.04835 * 179.97438 * 10 8 7 12 12 C 1.34775 * 121.05601 * 131.58422 * 11 10 8 13 13 O 1.21276 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00022 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47145 * 60.00107 * 20 18 16 22 22 H 1.48496 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47229 * 300.00299 * 20 18 16 24 24 C 1.47130 * 117.88682 * 311.85477 * 11 10 8 25 25 C 1.52798 * 108.95514 * 51.92990 * 24 11 10 26 26 O 1.42484 * 113.80996 * 268.76193 * 8 7 6 27 27 H 1.09003 * 109.47491 * 299.99736 * 1 2 3 28 28 H 1.08996 * 109.47345 * 59.99621 * 1 2 3 29 29 H 1.09006 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47233 * 59.99929 * 3 2 1 31 31 H 1.09001 * 109.47203 * 300.00414 * 3 2 1 32 32 H 1.08999 * 113.79486 * 41.47508 * 7 6 4 33 33 H 1.08998 * 113.89831 * 270.01977 * 7 6 4 34 34 H 1.09005 * 113.79028 * 89.98539 * 9 6 4 35 35 H 1.09001 * 113.79181 * 318.52244 * 9 6 4 36 36 H 1.09004 * 109.74764 * 60.31980 * 10 8 7 37 37 H 1.08995 * 109.74662 * 299.59465 * 10 8 7 38 38 H 1.09001 * 109.47434 * 59.99478 * 14 12 11 39 39 H 1.08999 * 109.47072 * 299.99957 * 14 12 11 40 40 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.59218 * 171.75189 * 24 11 10 42 42 H 1.09000 * 109.59616 * 292.20233 * 24 11 10 43 43 H 1.09004 * 109.55893 * 186.04400 * 25 24 11 44 44 H 1.09001 * 109.37104 * 66.02504 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 8 4.0341 0.0917 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 5.7309 2.5516 -0.0011 8 6 5.3838 3.9082 -0.6285 9 6 3.9942 3.7465 0.0018 10 6 6.1854 5.0732 -0.0472 11 7 5.7593 6.3067 -0.7312 12 6 5.4426 7.4151 -0.0327 13 8 5.5057 7.4073 1.1783 14 6 5.0091 8.6637 -0.7567 15 16 4.6553 9.9674 0.4479 16 6 4.1866 11.2710 -0.6409 17 1 4.1844 11.1084 -1.7085 18 6 3.8143 12.5051 -0.1262 19 7 3.8118 12.7018 1.1753 20 14 3.3182 13.8874 -1.2805 21 1 2.1427 13.4641 -2.0832 22 1 2.9683 15.0931 -0.4874 23 1 4.4496 14.2041 -2.1887 24 6 5.6846 6.2883 -2.2004 25 6 4.8434 5.0907 -2.6396 26 8 5.3725 3.8971 -2.0532 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 6.2925 1.8920 -0.6626 33 1 6.1667 2.6265 0.9952 34 1 3.9111 4.1768 0.9999 35 1 3.1759 4.0361 -0.6574 36 1 7.2497 4.9078 -0.2147 37 1 5.9891 5.1584 1.0215 38 1 4.1115 8.4534 -1.3382 39 1 5.8058 8.9918 -1.4243 40 1 3.5520 13.5644 1.5350 41 1 5.2204 7.2089 -2.5544 42 1 6.6881 6.1989 -2.6164 43 1 4.8699 5.0049 -3.7260 44 1 3.8138 5.2320 -2.3109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068314640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:54 Heat of formation + Delta-G solvation = -98.645529 kcal Electronic energy + Delta-G solvation = -27970.983699 eV Core-core repulsion = 23824.374480 eV Total energy + Delta-G solvation = -4146.609219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48738 -39.75448 -38.80038 -37.69297 -36.79560 -34.81981 -32.51126 -31.95286 -29.99147 -29.55521 -28.18340 -26.92277 -26.40877 -25.61541 -25.21081 -23.67560 -20.85357 -19.48066 -19.38352 -17.90082 -17.71216 -17.15902 -16.97943 -16.89888 -16.61187 -16.08117 -15.82443 -15.42404 -15.24013 -15.06432 -14.88016 -14.75027 -14.31131 -14.04215 -13.91130 -13.46084 -13.35798 -13.11311 -12.85472 -12.59694 -12.54275 -12.41941 -12.16616 -11.96032 -11.81219 -11.61103 -11.12990 -11.10518 -10.96746 -10.83411 -10.48060 -10.21035 -10.02372 -9.90662 -9.55727 -9.14234 -9.13099 -8.64887 -8.34283 -6.60432 -6.29653 -4.01490 2.12162 2.30829 2.64219 2.84690 3.00431 3.16906 3.17479 3.23137 3.42172 3.44649 3.85759 4.10252 4.12134 4.23570 4.47439 4.66862 4.67311 4.71414 4.75529 4.78644 4.91063 4.94744 4.96722 4.98585 5.05681 5.06971 5.16018 5.19721 5.27383 5.28320 5.33669 5.40750 5.42128 5.54362 5.60929 5.72351 5.97109 6.27776 6.57483 6.69772 7.24390 7.29165 7.51039 7.83432 8.26438 8.33470 9.15628 10.77614 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.002296 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.551754 B =12193.033870 C =12899.864007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.049 3.951 4 C 0.541 3.459 5 O -0.520 6.520 6 N -0.640 5.640 7 C 0.131 3.869 8 C 0.070 3.930 9 C 0.079 3.921 10 C 0.101 3.899 11 N -0.624 5.624 12 C 0.538 3.462 13 O -0.511 6.511 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.073 3.927 25 C 0.045 3.955 26 O -0.346 6.346 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.270 0.730 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -19.472 -6.846 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.031 4.031 4 C 0.330 3.670 5 O -0.394 6.394 6 N -0.378 5.378 7 C 0.009 3.991 8 C 0.027 3.973 9 C -0.044 4.044 10 C -0.022 4.022 11 N -0.362 5.362 12 C 0.327 3.673 13 O -0.385 6.385 14 C -0.302 4.302 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.050 4.050 25 C -0.032 4.032 26 O -0.264 6.264 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.035 -20.463 -4.991 21.088 hybrid contribution -0.812 1.529 -2.136 2.750 sum -1.847 -18.934 -7.128 20.315 Atomic orbital electron populations 1.22858 0.80105 1.03405 1.00317 1.87998 1.20001 1.25119 1.95462 1.22137 0.91162 0.86973 1.02778 1.19843 0.88193 0.82808 0.76147 1.90739 1.74477 1.25538 1.48664 1.49769 1.08216 1.05554 1.74300 1.23116 0.82656 0.92317 1.01017 1.23025 0.95291 0.95690 0.83247 1.23911 0.98969 0.79241 1.02299 1.22001 0.98696 0.82264 0.99275 1.48194 1.69576 1.11833 1.06571 1.20375 0.75795 0.83513 0.87649 1.90707 1.51235 1.82920 1.13643 1.23557 1.03858 0.97765 1.05028 1.85425 1.87308 1.02842 1.07627 1.22799 1.52877 0.98414 0.94459 0.90958 1.24990 0.94869 0.98064 0.95586 1.69996 1.44739 1.24441 1.11015 0.86224 0.79036 0.80203 0.80050 1.19927 1.20777 1.19896 1.22307 1.01791 1.00350 0.80590 1.23012 0.96917 0.84164 0.99116 1.87975 1.83848 1.38206 1.16335 0.93649 0.93691 0.88960 0.90093 0.90234 0.88492 0.87557 0.87771 0.89341 0.90098 0.87288 0.89231 0.89104 0.92043 0.87951 0.90298 0.87024 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.15 10.24 -55.14 -0.56 -4.72 16 3 C 0.05 0.46 6.17 36.00 0.22 0.69 16 4 C 0.54 6.70 8.13 -10.99 -0.09 6.61 16 5 O -0.52 -8.64 17.23 -14.35 -0.25 -8.89 16 6 N -0.64 -6.51 3.61 -180.77 -0.65 -7.16 16 7 C 0.13 1.14 8.23 -3.18 -0.03 1.11 16 8 C 0.07 0.61 1.21 -90.31 -0.11 0.50 16 9 C 0.08 0.67 7.75 -3.18 -0.02 0.65 16 10 C 0.10 1.00 5.78 -3.64 -0.02 0.98 16 11 N -0.62 -7.41 3.03 -172.69 -0.52 -7.93 16 12 C 0.54 8.95 7.73 -10.99 -0.08 8.86 16 13 O -0.51 -10.39 15.36 5.56 0.09 -10.30 16 14 C -0.15 -2.76 4.53 36.00 0.16 -2.60 16 15 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 16 C -0.54 -14.55 9.50 30.94 0.29 -14.26 16 17 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 18 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -25.25 13.22 55.49 0.73 -24.52 16 20 Si 0.92 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 C 0.07 0.65 6.48 -3.80 -0.02 0.62 16 25 C 0.05 0.34 6.87 37.05 0.25 0.60 16 26 O -0.35 -3.28 10.52 -35.23 -0.37 -3.65 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 35 H 0.09 0.68 7.27 -51.93 -0.38 0.31 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.16 6.91 -51.93 -0.36 0.80 16 38 H 0.09 1.47 7.68 -51.91 -0.40 1.07 16 39 H 0.09 1.54 8.00 -51.92 -0.42 1.12 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.10 0.88 6.03 -51.92 -0.31 0.57 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.45 7.19 -51.93 -0.37 0.08 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -37.35 382.03 -7.87 -45.21 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.42 Total: -2.65 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 1.57 Total: 7.02 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.44 Total: -39.61 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.10 Total: -27.56 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.35 -7.87 -45.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068314640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.434 kcal (2) G-P(sol) polarization free energy of solvation -37.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds