Wall clock time and date at job start Wed Apr 1 2020 03:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00187 * 2 1 4 4 C 1.50693 * 109.47383 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00057 * 0.02562 * 4 3 2 6 6 N 1.34787 * 120.00202 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00035 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.77192 * 31.47018 * 7 6 4 9 9 C 1.55059 * 110.86669 * 267.71082 * 7 6 4 10 10 O 1.44612 * 103.66620 * 205.32302 * 9 7 6 11 11 C 1.42834 * 106.73312 * 39.08880 * 10 9 7 12 12 C 1.52649 * 115.96351 * 202.47217 * 11 10 9 13 13 N 1.47232 * 87.78197 * 218.41343 * 12 11 10 14 14 C 1.34771 * 135.96339 * 206.38257 * 13 12 11 15 15 O 1.21281 * 120.00398 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99698 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47279 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99786 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00453 * 359.72125 * 18 17 16 20 20 C 1.38805 * 119.99580 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99709 * 179.72302 * 20 18 17 22 22 Si 1.86803 * 119.99953 * 359.71856 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00492 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00509 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00339 * 22 20 18 26 26 C 1.47221 * 88.06408 * 26.63579 * 13 12 11 27 27 C 1.53324 * 108.32952 * 334.30279 * 11 10 9 28 28 H 1.08997 * 109.47322 * 299.99872 * 1 2 3 29 29 H 1.08999 * 109.46748 * 60.00100 * 1 2 3 30 30 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47284 * 59.99869 * 3 2 1 32 32 H 1.08998 * 109.47058 * 300.00095 * 3 2 1 33 33 H 0.96999 * 119.99680 * 0.02562 * 6 4 3 34 34 H 1.09004 * 110.58801 * 323.86643 * 9 7 6 35 35 H 1.09005 * 110.58800 * 86.63030 * 9 7 6 36 36 H 1.08998 * 113.50295 * 103.68596 * 12 11 10 37 37 H 1.09003 * 113.50456 * 333.13554 * 12 11 10 38 38 H 1.09002 * 109.47315 * 59.99436 * 16 14 13 39 39 H 1.09004 * 109.46949 * 300.00089 * 16 14 13 40 40 H 0.97000 * 119.99481 * 179.97438 * 21 20 18 41 41 H 1.08993 * 113.50308 * 88.09432 * 26 13 12 42 42 H 1.08995 * 113.50005 * 218.64392 * 26 13 12 43 43 H 1.09009 * 110.55867 * 120.19530 * 27 11 10 44 44 H 1.09003 * 110.56416 * 242.89196 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 0.0002 7 6 5.7369 2.1811 0.0003 8 1 6.0536 1.2839 -0.5314 9 6 6.2920 2.1957 1.4480 10 8 7.6435 2.6857 1.2908 11 6 7.5962 3.7112 0.2977 12 6 8.9106 4.0081 -0.4196 13 7 8.5413 5.4329 -0.3854 14 6 8.8219 6.5246 -1.1242 15 8 9.5538 6.4335 -2.0870 16 6 8.2263 7.8584 -0.7540 17 16 8.7881 9.1167 -1.9276 18 6 7.9658 10.5321 -1.2755 19 1 7.3384 10.4373 -0.4016 20 6 8.1193 11.7678 -1.8889 21 7 7.5006 12.8240 -1.4051 22 14 9.2039 11.9316 -3.4010 23 1 8.3890 11.7051 -4.6216 24 1 9.7909 13.2950 -3.4436 25 1 10.2940 10.9251 -3.3397 26 6 7.7364 5.1441 0.8130 27 6 6.3911 3.4460 -0.6124 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8593 3.1725 -0.0001 34 1 5.7100 2.8713 2.0749 35 1 6.2931 1.1900 1.8683 36 1 8.9586 3.5956 -1.4273 37 1 9.7932 3.7735 0.1755 38 1 8.5449 8.1321 0.2518 39 1 7.1387 7.7919 -0.7851 40 1 7.6082 13.6876 -1.8335 41 1 8.2996 5.2183 1.7432 42 1 6.7935 5.6901 0.8452 43 1 5.6982 4.2870 -0.5849 44 1 6.7180 3.2539 -1.6343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068653082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:01 Heat of formation + Delta-G solvation = -106.005017 kcal Electronic energy + Delta-G solvation = -27135.095514 eV Core-core repulsion = 22988.167163 eV Total energy + Delta-G solvation = -4146.928351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50030 -40.20429 -38.86133 -37.91272 -36.88897 -35.13178 -32.49249 -31.59563 -30.76326 -29.20356 -28.38668 -26.51682 -26.32968 -25.91451 -25.53836 -22.46512 -21.27693 -20.80430 -19.06197 -18.14251 -17.78493 -17.50166 -16.90036 -16.78581 -16.68321 -16.21681 -16.12395 -15.54000 -15.11616 -15.09022 -14.90379 -14.81116 -14.28490 -13.99788 -13.83493 -13.65929 -13.45507 -13.06713 -12.92230 -12.84202 -12.66732 -12.30741 -12.14475 -12.01116 -11.87864 -11.70208 -11.32186 -11.28993 -11.05092 -10.67822 -10.36460 -10.31231 -10.10959 -9.90935 -9.64540 -9.59253 -9.05434 -8.81324 -8.56665 -6.98514 -6.34026 -4.06515 2.06959 2.18678 2.43892 2.80651 3.01053 3.29148 3.38004 3.46803 3.51341 3.59180 3.82334 3.89985 4.02066 4.21872 4.28220 4.44184 4.49094 4.52552 4.58699 4.61208 4.79374 4.84026 4.91281 5.03510 5.05041 5.07683 5.12970 5.16424 5.26602 5.27996 5.37531 5.38970 5.41105 5.46082 5.68463 5.75922 5.85540 5.93218 6.38280 6.43650 6.89870 7.64024 7.67344 7.88934 8.30917 8.36025 9.12007 10.75075 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.002057 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.113902 B =13607.558187 C =14874.294453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.042 3.958 4 C 0.516 3.484 5 O -0.514 6.514 6 N -0.720 5.720 7 C 0.115 3.885 8 H 0.112 0.888 9 C 0.037 3.963 10 O -0.344 6.344 11 C 0.066 3.934 12 C 0.117 3.883 13 N -0.647 5.647 14 C 0.565 3.435 15 O -0.512 6.512 16 C -0.115 4.115 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.235 1.235 26 C 0.090 3.910 27 C -0.130 4.130 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.405 0.595 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 -23.662 6.859 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.038 4.038 4 C 0.301 3.699 5 O -0.388 6.388 6 N -0.376 5.376 7 C 0.010 3.990 8 H 0.130 0.870 9 C -0.041 4.041 10 O -0.260 6.260 11 C 0.025 3.975 12 C -0.007 4.007 13 N -0.387 5.387 14 C 0.355 3.645 15 O -0.386 6.386 16 C -0.265 4.265 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.033 4.033 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.240 0.760 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.455 -24.452 5.383 27.133 hybrid contribution -1.148 1.359 0.586 1.873 sum -11.603 -23.093 5.969 26.525 Atomic orbital electron populations 1.22866 0.80018 1.03523 1.00304 1.88014 1.20066 1.24973 1.95463 1.22231 0.91204 0.87323 1.03013 1.20338 0.88855 0.84485 0.76225 1.90763 1.74547 1.26392 1.47067 1.45795 1.06089 1.09141 1.76538 1.22608 0.79431 1.00052 0.96927 0.86985 1.24043 0.83073 1.00879 0.96096 1.88854 1.26894 1.52336 1.57933 1.23079 0.96436 0.88513 0.89512 1.22938 0.96228 0.80304 1.01191 1.49310 1.51558 1.08191 1.29640 1.19851 0.80071 0.83092 0.81517 1.90729 1.36233 1.84319 1.27285 1.23212 1.03961 0.94204 1.05161 1.84826 1.65798 1.01922 1.38858 1.22290 1.33953 0.92767 1.17938 0.89370 1.24710 0.94888 0.94534 0.97142 1.69933 1.41447 0.99830 1.40351 0.86739 0.82593 0.79339 0.83219 1.19174 1.19865 1.15914 1.23491 0.96518 0.93118 0.90220 1.22784 0.96149 0.97612 1.00294 0.93644 0.93629 0.88940 0.89926 0.89891 0.75977 0.91280 0.87966 0.89543 0.88882 0.88455 0.88597 0.91889 0.88689 0.89759 0.88969 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.37 -3.12 10.24 -55.14 -0.56 -3.68 16 3 C 0.04 0.23 6.42 36.00 0.23 0.46 16 4 C 0.52 4.19 7.91 -10.98 -0.09 4.10 16 5 O -0.51 -6.63 16.14 -14.36 -0.23 -6.87 16 6 N -0.72 -3.97 5.19 -51.72 -0.27 -4.24 16 7 C 0.12 0.79 3.51 -65.78 -0.23 0.56 16 8 H 0.11 0.96 7.54 -51.93 -0.39 0.57 16 9 C 0.04 0.26 7.42 38.25 0.28 0.55 16 10 O -0.34 -3.10 11.32 -35.23 -0.40 -3.50 16 11 C 0.07 0.56 1.66 -90.68 -0.15 0.41 16 12 C 0.12 1.24 8.13 -8.03 -0.07 1.18 16 13 N -0.65 -8.49 3.65 -185.05 -0.68 -9.17 16 14 C 0.57 10.12 8.10 -10.99 -0.09 10.03 16 15 O -0.51 -11.17 16.64 5.56 0.09 -11.07 16 16 C -0.11 -2.19 5.98 36.01 0.22 -1.98 16 17 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 18 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 19 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 20 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16 22 Si 0.86 21.47 27.73 -169.99 -4.71 16.75 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 26 C 0.09 0.85 7.95 -7.89 -0.06 0.78 16 27 C -0.13 -0.91 6.20 -25.50 -0.16 -1.07 16 28 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.40 1.09 8.41 -40.82 -0.34 0.74 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.91 7.91 -51.93 -0.41 0.50 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 39 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 43 H 0.09 0.54 7.45 -51.92 -0.39 0.15 16 44 H 0.10 0.72 7.81 -51.93 -0.41 0.32 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -37.93 387.17 -7.51 -45.44 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.58 Total: -3.20 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 1.21 Total: 4.51 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.17 Total: -38.72 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -1.10 Total: -25.12 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.93 -7.51 -45.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068653082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.566 kcal (2) G-P(sol) polarization free energy of solvation -37.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds