Wall clock time and date at job start Wed Apr 1 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99605 * 2 1 4 4 C 1.50704 * 109.46629 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00164 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99699 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99960 * 180.02562 * 6 4 3 8 8 H 1.08999 * 110.92846 * 328.65036 * 7 6 4 9 9 C 1.55055 * 110.87063 * 92.29614 * 7 6 4 10 10 O 1.44565 * 103.63799 * 154.75731 * 9 7 6 11 11 C 1.42970 * 106.77387 * 320.76010 * 10 9 7 12 12 C 1.53218 * 115.36931 * 156.23615 * 11 10 9 13 13 N 1.47718 * 85.89766 * 93.48224 * 12 11 10 14 14 C 1.34784 * 134.43018 * 204.10154 * 13 12 11 15 15 O 1.21283 * 119.99957 * 180.02562 * 14 13 12 16 16 C 1.50693 * 119.99956 * 0.02820 * 14 13 12 17 17 S 1.81001 * 109.47190 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00018 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00012 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99749 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99818 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00120 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47069 * 90.00091 * 22 20 18 24 24 H 1.48498 * 109.47046 * 209.99857 * 22 20 18 25 25 H 1.48502 * 109.46894 * 330.00095 * 22 20 18 26 26 C 1.47714 * 91.13791 * 24.11590 * 13 12 11 27 27 C 1.53436 * 108.17029 * 25.81912 * 11 10 9 28 28 H 1.09005 * 109.46595 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47639 * 299.99796 * 1 2 3 30 30 H 1.08996 * 109.47187 * 60.00247 * 1 2 3 31 31 H 1.09000 * 109.47220 * 59.99944 * 3 2 1 32 32 H 1.08996 * 109.47076 * 299.99651 * 3 2 1 33 33 H 0.97001 * 119.99992 * 359.97438 * 6 4 3 34 34 H 1.09001 * 110.58809 * 36.21893 * 9 7 6 35 35 H 1.08999 * 110.72337 * 273.35986 * 9 7 6 36 36 H 1.09001 * 113.79968 * 207.72387 * 12 11 10 37 37 H 1.08994 * 113.80233 * 339.23265 * 12 11 10 38 38 H 1.09003 * 109.47191 * 299.99774 * 16 14 13 39 39 H 1.08996 * 109.47541 * 59.99534 * 16 14 13 40 40 H 0.97003 * 120.00038 * 180.02562 * 21 20 18 41 41 H 1.08996 * 113.81169 * 221.64152 * 26 13 12 42 42 H 1.09003 * 113.90805 * 90.14330 * 26 13 12 43 43 H 1.09002 * 110.55081 * 116.91242 * 27 11 10 44 44 H 1.08998 * 110.55704 * 239.72917 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7369 2.1813 0.0003 8 1 6.0564 1.2840 0.5303 9 6 6.2922 2.1950 -1.4474 10 8 7.6437 2.6831 -1.2894 11 6 7.5975 3.7123 -0.2981 12 6 8.9164 3.9770 0.4353 13 7 9.1515 5.0194 -0.5845 14 6 10.2501 5.6177 -1.0864 15 8 10.1393 6.4681 -1.9439 16 6 11.6162 5.2299 -0.5819 17 16 12.8760 6.2033 -1.4429 18 6 14.3303 5.5648 -0.6799 19 1 14.2511 4.7983 0.0768 20 6 15.5778 6.0463 -1.0522 21 7 16.6642 5.5690 -0.4826 22 14 15.7149 7.3716 -2.3615 23 1 15.6658 8.7094 -1.7187 24 1 17.0008 7.2184 -3.0881 25 1 14.5869 7.2405 -3.3184 26 6 7.7010 5.1440 -0.8341 27 6 6.3909 3.4463 0.6118 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8592 3.1726 -0.0009 34 1 5.7111 2.8713 -2.0744 35 1 6.2944 1.1899 -1.8691 36 1 8.7877 4.3695 1.4440 37 1 9.6211 3.1469 0.3866 38 1 11.6766 5.4240 0.4890 39 1 11.7851 4.1695 -0.7690 40 1 17.5360 5.9057 -0.7425 41 1 7.4424 5.2388 -1.8887 42 1 7.2069 5.8856 -0.2063 43 1 6.7175 3.2524 1.6334 44 1 5.6978 4.2871 0.5837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068653083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:05 Heat of formation + Delta-G solvation = -107.657587 kcal Electronic energy + Delta-G solvation = -26925.797578 eV Core-core repulsion = 22778.797566 eV Total energy + Delta-G solvation = -4147.000012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39557 -40.21202 -38.76922 -37.95011 -36.68912 -35.11412 -32.42516 -31.78746 -30.64447 -29.29786 -28.36138 -26.51675 -26.34739 -25.85473 -25.49120 -22.45266 -21.32837 -20.69034 -19.20848 -18.10140 -17.72338 -17.47536 -16.92895 -16.84677 -16.67232 -16.20624 -15.78597 -15.51272 -15.31625 -15.12457 -14.96413 -14.86074 -14.27597 -13.82912 -13.78759 -13.74585 -13.47805 -13.02655 -12.89271 -12.82464 -12.69492 -12.27897 -12.15523 -12.06743 -11.96881 -11.62454 -11.28429 -11.21665 -10.99450 -10.59694 -10.43178 -10.36220 -10.14370 -9.84112 -9.64542 -9.46933 -8.98971 -8.71828 -8.48657 -6.90572 -6.27314 -3.99103 2.02059 2.12806 2.55038 2.93685 3.07069 3.26712 3.34206 3.47309 3.52189 3.58220 3.82255 3.87185 4.05742 4.16344 4.34481 4.42318 4.46871 4.53364 4.54165 4.60412 4.72051 4.77075 4.94677 4.97449 5.06695 5.10514 5.11684 5.13573 5.20785 5.26938 5.30596 5.35495 5.39083 5.48150 5.77942 5.81404 5.89576 6.04437 6.32785 6.50090 6.83927 7.62454 7.69835 7.95757 8.42485 8.43456 9.18835 10.81914 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.040810 B = 0.001678 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.939460 B =16684.730521 C =16947.810665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.514 3.486 5 O -0.511 6.511 6 N -0.720 5.720 7 C 0.115 3.885 8 H 0.113 0.887 9 C 0.035 3.965 10 O -0.332 6.332 11 C 0.071 3.929 12 C 0.111 3.889 13 N -0.644 5.644 14 C 0.558 3.442 15 O -0.517 6.517 16 C -0.116 4.116 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.097 3.903 27 C -0.145 4.145 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.403 0.597 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.232 -6.732 4.906 36.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.299 3.701 5 O -0.385 6.385 6 N -0.376 5.376 7 C 0.009 3.991 8 H 0.131 0.869 9 C -0.043 4.043 10 O -0.249 6.249 11 C 0.029 3.971 12 C -0.012 4.012 13 N -0.383 5.383 14 C 0.347 3.653 15 O -0.392 6.392 16 C -0.266 4.266 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.027 4.027 27 C -0.184 4.184 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.238 0.762 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -34.297 -6.435 3.434 35.064 hybrid contribution -0.129 0.340 0.660 0.754 sum -34.426 -6.095 4.094 35.200 Atomic orbital electron populations 1.22866 0.80025 1.03582 1.00227 1.88030 1.20056 1.24936 1.95441 1.22227 0.91266 0.87350 1.02864 1.20343 0.88835 0.84547 0.76352 1.90778 1.74498 1.26380 1.46805 1.45782 1.06126 1.09000 1.76675 1.22601 0.79265 1.00137 0.97058 0.86905 1.24081 0.83233 1.00954 0.96046 1.88954 1.26407 1.51420 1.58122 1.23146 0.95247 0.89355 0.89350 1.23353 0.94377 0.90719 0.92801 1.49823 1.05352 1.41803 1.41300 1.19970 0.84294 0.79829 0.81167 1.90705 1.85976 1.31339 1.31154 1.23216 0.93891 1.05155 1.04377 1.84775 0.99062 1.53442 1.54330 1.22310 0.90377 1.27335 1.26812 0.89369 1.24700 0.94511 0.96122 0.95893 1.69937 0.97970 1.42113 1.41654 0.86740 0.79675 0.82397 0.83081 1.19211 1.19904 1.15922 1.23555 0.81337 0.94908 1.02857 1.23029 0.96890 0.97725 1.00711 0.88902 0.93680 0.93655 0.90014 0.89989 0.76151 0.91489 0.87914 0.88113 0.88615 0.88616 0.88439 0.91946 0.89512 0.88996 0.88375 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.37 -2.83 10.24 -55.14 -0.56 -3.40 16 3 C 0.04 0.19 6.42 36.01 0.23 0.42 16 4 C 0.51 3.71 7.91 -10.98 -0.09 3.62 16 5 O -0.51 -6.35 16.14 -14.35 -0.23 -6.58 16 6 N -0.72 -3.06 5.19 -51.74 -0.27 -3.33 16 7 C 0.11 0.69 3.51 -65.79 -0.23 0.46 16 8 H 0.11 0.89 7.55 -51.93 -0.39 0.49 16 9 C 0.03 0.27 7.42 38.24 0.28 0.56 16 10 O -0.33 -3.61 11.29 -35.23 -0.40 -4.01 16 11 C 0.07 0.59 1.53 -90.28 -0.14 0.45 16 12 C 0.11 1.07 8.01 -3.27 -0.03 1.04 16 13 N -0.64 -9.05 3.61 -182.05 -0.66 -9.71 16 14 C 0.56 10.72 8.07 -10.99 -0.09 10.63 16 15 O -0.52 -11.88 16.59 5.55 0.09 -11.79 16 16 C -0.12 -2.37 5.90 36.00 0.21 -2.16 16 17 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 18 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 19 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 20 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 21 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 22 Si 0.86 22.06 27.74 -169.99 -4.72 17.35 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 26 C 0.10 0.97 8.24 -3.26 -0.03 0.95 16 27 C -0.14 -0.65 6.22 -25.45 -0.16 -0.81 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.04 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.40 0.36 8.41 -40.82 -0.34 0.01 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.81 8.14 -51.91 -0.42 1.38 16 39 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 0.68 8.06 -51.93 -0.42 0.26 16 43 H 0.10 0.34 7.93 -51.93 -0.41 -0.07 16 44 H 0.09 0.20 7.52 -51.93 -0.39 -0.19 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -40.72 387.52 -7.43 -48.15 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -6.60 Total: -4.96 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 1.30 Total: 4.18 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.15 Total: -39.07 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.10 Total: -25.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.72 Total: 17.35 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.72 -7.43 -48.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068653083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.507 kcal (2) G-P(sol) polarization free energy of solvation -40.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds