Wall clock time and date at job start Wed Apr 1 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00194 * 2 1 4 4 C 1.50695 * 109.47288 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00515 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99633 * 180.02562 * 4 3 2 7 7 C 1.47720 * 134.43028 * 180.02562 * 6 4 3 8 8 C 1.53233 * 85.89157 * 155.90083 * 7 6 4 9 9 C 1.47718 * 134.43443 * 0.02562 * 6 4 3 10 10 C 1.53436 * 114.98636 * 139.52307 * 8 7 6 11 11 C 1.54998 * 103.84710 * 128.85244 * 10 8 7 12 12 H 1.08996 * 110.87403 * 97.29740 * 11 10 8 13 13 N 1.46508 * 110.86910 * 220.98087 * 11 10 8 14 14 C 1.34775 * 119.99858 * 205.00004 * 13 11 10 15 15 O 1.21284 * 119.99904 * 359.97438 * 14 13 11 16 16 C 1.50697 * 119.99712 * 180.02562 * 14 13 11 17 17 S 1.81003 * 109.46784 * 179.97438 * 16 14 13 18 18 C 1.76195 * 99.99861 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00384 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00123 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99729 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00210 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47013 * 90.00297 * 22 20 18 24 24 H 1.48508 * 109.47222 * 210.00341 * 22 20 18 25 25 H 1.48496 * 109.47186 * 330.00261 * 22 20 18 26 26 C 1.55051 * 102.12044 * 339.13339 * 11 10 8 27 27 O 1.42970 * 115.33674 * 266.48675 * 8 7 6 28 28 H 1.08996 * 109.47505 * 59.99593 * 1 2 3 29 29 H 1.08998 * 109.46586 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46664 * 299.99657 * 1 2 3 31 31 H 1.09003 * 109.46783 * 59.99962 * 3 2 1 32 32 H 1.09002 * 109.46826 * 300.01022 * 3 2 1 33 33 H 1.09000 * 113.80417 * 41.65587 * 7 6 4 34 34 H 1.09000 * 113.80087 * 270.14493 * 7 6 4 35 35 H 1.09003 * 113.79646 * 89.85653 * 9 6 4 36 36 H 1.09001 * 113.80640 * 318.35315 * 9 6 4 37 37 H 1.09002 * 110.55081 * 247.43879 * 10 8 7 38 38 H 1.08998 * 110.55704 * 10.25553 * 10 8 7 39 39 H 0.97007 * 119.99931 * 24.99234 * 13 11 10 40 40 H 1.09000 * 109.47028 * 299.99306 * 16 14 13 41 41 H 1.08996 * 109.47538 * 59.99765 * 16 14 13 42 42 H 0.96998 * 119.99444 * 179.97438 * 21 20 18 43 43 H 1.09002 * 110.59346 * 278.06492 * 26 11 10 44 44 H 1.09002 * 110.71770 * 155.20021 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0342 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0002 7 6 5.7316 2.5510 -0.0011 8 6 5.3830 3.9071 -0.6237 9 6 3.9936 3.7468 0.0013 10 6 6.2003 5.0928 -0.0940 11 6 6.7276 5.7829 -1.3779 12 1 6.0940 6.6257 -1.6539 13 7 8.1194 6.2078 -1.2080 14 6 8.6074 7.2265 -1.9431 15 8 7.8946 7.7912 -2.7456 16 6 10.0391 7.6632 -1.7687 17 16 10.3900 9.0415 -2.8883 18 6 12.0787 9.3412 -2.4846 19 1 12.5704 8.7376 -1.7360 20 6 12.7776 10.3523 -3.1295 21 7 12.1786 11.0876 -4.0423 22 14 14.5677 10.6705 -2.7011 23 1 15.4401 9.8483 -3.5775 24 1 14.8771 12.1088 -2.9036 25 1 14.8090 10.3074 -1.2815 26 6 6.6214 4.6453 -2.4260 27 8 5.4105 3.9495 -2.0525 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 6.2927 1.8933 -0.6649 34 1 6.1661 2.6233 0.9960 35 1 3.9076 4.1771 0.9991 36 1 3.1774 4.0365 -0.6606 37 1 5.5645 5.7731 0.4725 38 1 7.0297 4.7420 0.5201 39 1 8.6895 5.7560 -0.5663 40 1 10.1989 7.9817 -0.7386 41 1 10.7036 6.8304 -1.9988 42 1 12.6669 11.7944 -4.4927 43 1 7.4822 3.9800 -2.3583 44 1 6.5332 5.0550 -3.4322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068711282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:50 Heat of formation + Delta-G solvation = -109.716730 kcal Electronic energy + Delta-G solvation = -26836.670885 eV Core-core repulsion = 22689.581583 eV Total energy + Delta-G solvation = -4147.089303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51661 -39.77860 -39.02065 -37.83925 -36.84664 -34.63485 -32.47553 -31.67973 -30.70571 -29.20854 -28.20199 -27.09331 -26.43896 -25.52811 -25.42771 -22.18769 -21.02938 -20.49605 -19.58600 -17.97749 -17.80082 -17.22262 -16.93274 -16.76814 -16.57461 -16.17972 -16.02582 -15.46250 -15.29227 -14.93114 -14.84705 -14.64887 -14.31115 -14.10829 -13.80121 -13.61473 -13.22971 -13.16308 -12.90754 -12.68782 -12.51506 -12.44953 -12.22012 -11.99615 -11.87504 -11.60547 -11.17285 -11.10350 -11.06811 -10.80625 -10.31069 -10.17383 -10.09582 -9.87135 -9.56966 -9.21463 -9.13086 -9.06892 -8.30679 -6.56221 -6.26544 -3.97779 2.02990 2.21357 2.81315 2.90589 3.14374 3.19238 3.25032 3.28000 3.37602 3.60156 3.72124 3.97710 4.09760 4.15773 4.17231 4.55487 4.62044 4.67166 4.72392 4.78206 4.82401 4.83715 4.87884 4.93931 5.05162 5.08704 5.09001 5.12211 5.18675 5.21748 5.26408 5.35727 5.50729 5.60792 5.75750 5.79724 6.05104 6.30281 6.48114 6.53885 7.16110 7.50396 7.55157 7.74756 8.30266 8.43842 9.19035 10.80857 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.045094 B = 0.001580 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.770556 B =17721.280456 C =17990.721059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.050 3.950 4 C 0.539 3.461 5 O -0.519 6.519 6 N -0.642 5.642 7 C 0.098 3.902 8 C 0.073 3.927 9 C 0.107 3.893 10 C -0.146 4.146 11 C 0.118 3.882 12 H 0.111 0.889 13 N -0.729 5.729 14 C 0.534 3.466 15 O -0.513 6.513 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.033 3.967 27 O -0.339 6.339 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.401 0.599 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.269 0.731 43 H 0.069 0.931 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.190 -16.470 12.354 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.030 4.030 4 C 0.328 3.672 5 O -0.393 6.393 6 N -0.380 5.380 7 C -0.025 4.025 8 C 0.032 3.968 9 C -0.016 4.016 10 C -0.185 4.185 11 C 0.011 3.989 12 H 0.129 0.871 13 N -0.385 5.385 14 C 0.320 3.680 15 O -0.386 6.386 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.044 4.044 27 O -0.256 6.256 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.235 0.765 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.292 -16.439 10.720 28.957 hybrid contribution 2.164 -0.313 1.627 2.725 sum -19.128 -16.752 12.347 28.266 Atomic orbital electron populations 1.22857 0.80099 1.03469 1.00237 1.88012 1.20005 1.25135 1.95445 1.22142 0.91138 0.87014 1.02707 1.19872 0.88224 0.82876 0.76228 1.90750 1.74471 1.25590 1.48482 1.49776 1.08338 1.05526 1.74352 1.23714 0.82524 0.94887 1.01326 1.23024 0.95887 0.94126 0.83807 1.23483 0.97797 0.79199 1.01109 1.23024 1.00818 0.96477 0.98196 1.22429 0.84601 0.97915 0.93920 0.87136 1.45947 1.11758 1.36782 1.44019 1.20401 0.89423 0.78442 0.79694 1.90719 1.59608 1.53897 1.34395 1.23538 0.94305 1.05970 1.06681 1.85412 1.14055 1.35060 1.48726 1.22860 0.96545 1.21818 1.27307 0.90891 1.24992 0.99126 0.94888 0.94504 1.70015 1.36887 1.19567 1.23761 0.86166 0.82789 0.77692 0.78845 1.20243 1.20723 1.19691 1.24197 0.87188 0.92635 1.00417 1.88864 1.41915 1.77537 1.17316 0.93632 0.88946 0.93742 0.90237 0.90060 0.89092 0.88415 0.87732 0.88652 0.88543 0.88997 0.76455 0.89073 0.89069 0.92133 0.91307 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.68 10.24 -55.14 -0.56 -4.25 16 3 C 0.05 0.38 6.17 36.00 0.22 0.60 16 4 C 0.54 5.96 8.13 -10.98 -0.09 5.87 16 5 O -0.52 -8.22 17.23 -14.35 -0.25 -8.46 16 6 N -0.64 -5.41 3.61 -182.05 -0.66 -6.07 16 7 C 0.10 0.72 8.24 -3.26 -0.03 0.69 16 8 C 0.07 0.50 1.53 -90.29 -0.14 0.36 16 9 C 0.11 0.54 8.01 -3.28 -0.03 0.52 16 10 C -0.15 -0.81 6.22 -25.45 -0.16 -0.97 16 11 C 0.12 1.10 3.51 -65.79 -0.23 0.87 16 12 H 0.11 1.24 7.55 -51.93 -0.39 0.85 16 13 N -0.73 -7.86 5.19 -51.74 -0.27 -8.13 16 14 C 0.53 8.82 7.85 -10.99 -0.09 8.74 16 15 O -0.51 -10.60 15.51 5.55 0.09 -10.51 16 16 C -0.15 -2.86 6.16 36.00 0.22 -2.64 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -14.84 9.50 30.94 0.29 -14.54 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 22 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.03 0.33 7.42 38.24 0.28 0.61 16 27 O -0.34 -3.36 11.29 -35.23 -0.40 -3.76 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.10 0.24 8.10 -51.93 -0.42 -0.18 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.40 7.93 -51.93 -0.41 -0.02 16 38 H 0.09 0.36 7.52 -51.93 -0.39 -0.03 16 39 H 0.40 3.09 8.41 -40.82 -0.34 2.75 16 40 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 41 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -38.91 390.21 -7.96 -46.87 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.57 Total: -2.19 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 1.28 Total: 3.35 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.19 Total: -39.05 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -1.12 Total: -26.98 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.91 -7.96 -46.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068711282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.849 kcal (2) G-P(sol) polarization free energy of solvation -38.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds