Wall clock time and date at job start Wed Apr 1 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00135 * 2 1 4 4 H 1.48501 * 109.46971 * 274.98412 * 3 2 1 5 5 H 1.48495 * 109.47212 * 34.98043 * 3 2 1 6 6 H 1.48497 * 109.47338 * 154.98475 * 3 2 1 7 7 C 1.38814 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00536 * 187.05826 * 7 2 1 9 9 N 1.36940 * 119.99579 * 7.06411 * 7 2 1 10 10 C 1.47149 * 125.58222 * 354.73571 * 9 7 2 11 11 C 1.54622 * 107.37863 * 179.10975 * 10 9 7 12 12 C 1.53516 * 102.70303 * 339.38615 * 11 10 9 13 13 C 1.51781 * 117.00005 * 164.16627 * 12 11 10 14 14 N 1.47395 * 87.52187 * 92.92713 * 13 12 11 15 15 C 1.34767 * 135.85511 * 205.66251 * 14 13 12 16 16 O 1.21648 * 120.00262 * 0.02562 * 15 14 13 17 17 C 1.47077 * 119.99907 * 179.97438 * 15 14 13 18 18 C 1.36057 * 127.13753 * 0.03011 * 17 15 14 19 19 O 1.33802 * 109.84821 * 180.23024 * 18 17 15 20 20 C 1.34948 * 111.34526 * 359.54308 * 19 18 17 21 21 C 1.38966 * 133.07556 * 180.13631 * 20 19 18 22 22 C 1.37829 * 120.00670 * 180.33861 * 21 20 19 23 23 C 1.38883 * 120.62865 * 359.97438 * 22 21 20 24 24 F 1.35099 * 119.92707 * 180.02562 * 23 22 21 25 25 C 1.38041 * 120.14761 * 0.06642 * 23 22 21 26 26 C 1.39110 * 119.60815 * 359.91455 * 25 23 22 27 27 C 1.47391 * 88.28800 * 25.92017 * 14 13 12 28 28 C 1.47754 * 125.58020 * 174.76391 * 9 7 2 29 29 H 0.96996 * 119.99326 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.86320 * 59.65791 * 10 9 7 31 31 H 1.09000 * 109.86377 * 298.56531 * 10 9 7 32 32 H 1.09003 * 110.76665 * 221.08217 * 11 10 9 33 33 H 1.09003 * 110.76701 * 97.68724 * 11 10 9 34 34 H 1.09001 * 113.54595 * 338.26457 * 13 12 11 35 35 H 1.09005 * 113.60817 * 207.59552 * 13 12 11 36 36 H 1.07994 * 125.07964 * 359.96087 * 18 17 15 37 37 H 1.08000 * 119.99822 * 0.31534 * 21 20 19 38 38 H 1.08001 * 119.68927 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.19476 * 179.97438 * 25 23 22 40 40 H 1.08996 * 113.54895 * 88.74434 * 27 14 13 41 41 H 1.09004 * 113.54045 * 219.42237 * 27 14 13 42 42 H 1.09001 * 110.40919 * 83.47647 * 28 9 7 43 43 H 1.09006 * 110.40403 * 321.05686 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2057 0.1155 9 7 1.3334 -2.3836 -0.1448 10 6 -0.1297 -2.5309 -0.2002 11 6 -0.4355 -4.0343 -0.3932 12 6 0.8846 -4.5776 -0.9578 13 6 1.0798 -6.0825 -0.9271 14 7 0.5255 -6.1179 -2.2924 15 6 -0.1170 -7.0270 -3.0520 16 8 -0.3559 -8.1330 -2.6054 17 6 -0.5302 -6.6816 -4.4206 18 6 -0.3394 -5.4970 -5.0620 19 8 -0.8573 -5.5589 -6.2941 20 6 -1.4017 -6.7694 -6.5379 21 6 -2.0443 -7.3161 -7.6421 22 6 -2.5124 -8.6116 -7.5957 23 6 -2.3485 -9.3827 -6.4523 24 9 -2.8124 -10.6512 -6.4226 25 6 -1.7133 -8.8556 -5.3459 26 6 -1.2374 -7.5490 -5.3840 27 6 0.9854 -4.7286 -2.4677 28 6 1.9525 -3.7192 -0.2710 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5277 -1.9612 -1.0399 31 1 -0.5729 -2.1793 0.7315 32 1 -1.2478 -4.1750 -1.1062 33 1 -0.6711 -4.5063 0.5607 34 1 0.4552 -6.5876 -0.1904 35 1 2.1253 -6.3861 -0.8737 36 1 0.1525 -4.6340 -4.6382 37 1 -2.1773 -6.7256 -8.5366 38 1 -3.0114 -9.0312 -8.4568 39 1 -1.5858 -9.4544 -4.4561 40 1 2.0047 -4.6518 -2.8459 41 1 0.2818 -4.1032 -3.0173 42 1 2.1894 -4.1230 0.7134 43 1 2.8504 -3.6652 -0.8866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073154848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:03 Heat of formation + Delta-G solvation = 28.967483 kcal Electronic energy + Delta-G solvation = -29299.933643 eV Core-core repulsion = 25035.786977 eV Total energy + Delta-G solvation = -4264.146666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.14702 -42.93864 -40.73065 -38.29007 -37.97108 -35.75288 -33.33034 -32.27855 -30.66997 -30.10017 -29.34613 -28.64206 -26.24801 -25.98733 -24.17453 -23.86059 -22.69818 -22.61979 -20.38464 -19.57397 -18.69487 -18.32566 -17.75182 -17.23163 -16.73851 -16.69257 -16.07431 -15.76498 -15.73873 -15.56742 -15.28224 -14.82182 -14.55971 -14.25187 -13.95779 -13.75158 -13.67859 -13.32494 -13.03289 -12.96218 -12.49025 -12.38601 -12.23740 -12.01763 -11.93332 -11.36820 -11.10364 -10.97201 -10.76097 -10.56144 -10.53145 -10.31388 -10.16368 -9.98423 -9.83054 -9.70555 -8.88446 -8.79531 -8.65148 -8.57982 -6.92050 -5.80198 -3.13083 0.33349 0.75394 1.41445 2.25152 2.69443 2.98328 3.34363 3.34965 3.40760 3.42786 3.74000 4.07261 4.10597 4.37669 4.43152 4.48707 4.62526 4.67982 4.83857 4.86474 5.03350 5.12641 5.28649 5.41110 5.42953 5.45735 5.56633 5.61540 5.64827 5.68991 5.70964 5.73969 5.80084 5.91525 6.06539 6.14301 6.21111 6.37287 6.42439 6.56158 6.61177 6.64224 7.47614 7.53003 7.67228 7.74660 8.10367 8.16629 9.13329 9.73569 10.38946 11.31660 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020033 B = 0.002418 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.348223 B =11578.697155 C =12447.317698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.118 4.118 12 C -0.103 4.103 13 C 0.123 3.877 14 N -0.640 5.640 15 C 0.614 3.386 16 O -0.541 6.541 17 C -0.223 4.223 18 C 0.077 3.923 19 O -0.177 6.177 20 C 0.036 3.964 21 C -0.072 4.072 22 C -0.128 4.128 23 C 0.086 3.914 24 F -0.135 7.135 25 C -0.096 4.096 26 C -0.065 4.065 27 C 0.109 3.891 28 C 0.153 3.847 29 H 0.253 0.747 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.224 0.776 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 -14.317 -13.801 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.156 4.156 12 C -0.104 4.104 13 C 0.001 3.999 14 N -0.375 5.375 15 C 0.405 3.595 16 O -0.420 6.420 17 C -0.227 4.227 18 C 0.009 3.991 19 O -0.076 6.076 20 C -0.011 4.011 21 C -0.091 4.091 22 C -0.147 4.147 23 C 0.067 3.933 24 F -0.114 7.114 25 C -0.115 4.115 26 C -0.066 4.066 27 C -0.014 4.014 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.240 0.760 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.763 -14.681 -13.878 20.390 hybrid contribution 0.413 0.716 0.165 0.843 sum -2.351 -13.965 -13.713 19.712 Atomic orbital electron populations 1.69970 1.04921 1.25141 1.56587 1.24816 0.95678 0.97679 1.02044 0.86135 0.78720 0.83627 0.77505 1.21607 1.21791 1.20619 1.19041 0.91136 0.82411 1.43280 0.90341 1.44549 1.01547 1.00736 1.86293 1.21245 0.84397 0.88002 1.01030 1.22483 0.93882 0.99571 0.99651 1.22165 1.00212 0.93644 0.94408 1.22800 0.98979 0.95475 0.82647 1.49638 1.56036 1.14854 1.16924 1.16460 0.77569 0.82893 0.82540 1.90779 1.57079 1.21037 1.73065 1.20870 1.10372 0.95118 0.96342 1.25100 0.93840 0.98878 0.81316 1.83916 1.60463 1.31821 1.31431 1.19584 1.01124 0.83880 0.96519 1.19736 0.98487 0.94530 0.96298 1.20883 1.02341 0.93406 0.98052 1.17409 1.00255 0.80404 0.95233 1.91518 1.86645 1.36266 1.96927 1.20572 0.97770 0.94429 0.98755 1.19099 1.00478 0.94350 0.92715 1.23113 1.00067 0.80180 0.98000 1.21149 0.93263 0.86286 0.96650 0.93694 0.93320 0.93925 0.92062 0.91625 0.90146 0.89464 0.76001 0.83622 0.83293 0.83180 0.88831 0.90125 0.95463 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.65 10.35 55.49 0.57 -25.07 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.04 29.56 -169.99 -5.02 16.01 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.23 -5.97 10.26 -15.06 -0.15 -6.12 16 8 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 9 N -0.60 -13.96 3.41 -170.54 -0.58 -14.54 16 10 C 0.18 3.94 5.40 -2.83 -0.02 3.93 16 11 C -0.12 -1.98 6.40 -25.61 -0.16 -2.15 16 12 C -0.10 -1.51 1.06 -155.22 -0.16 -1.68 16 13 C 0.12 1.61 8.02 -7.48 -0.06 1.55 16 14 N -0.64 -8.74 3.70 -187.13 -0.69 -9.43 16 15 C 0.61 9.41 8.05 -12.68 -0.10 9.30 16 16 O -0.54 -9.90 17.05 5.24 0.09 -9.81 16 17 C -0.22 -2.96 6.31 -103.25 -0.65 -3.61 16 18 C 0.08 0.83 11.22 29.95 0.34 1.17 16 19 O -0.18 -1.96 10.53 5.23 0.06 -1.91 16 20 C 0.04 0.40 7.39 -38.57 -0.28 0.11 16 21 C -0.07 -0.61 10.06 -39.46 -0.40 -1.00 16 22 C -0.13 -1.06 9.99 -39.49 -0.39 -1.45 16 23 C 0.09 0.92 7.30 -39.41 -0.29 0.64 16 24 F -0.13 -1.50 17.26 2.25 0.04 -1.46 16 25 C -0.10 -1.21 9.86 -39.33 -0.39 -1.59 16 26 C -0.06 -0.84 6.29 -104.98 -0.66 -1.50 16 27 C 0.11 1.36 6.43 -7.34 -0.05 1.31 16 28 C 0.15 2.71 6.70 -3.22 -0.02 2.69 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.05 1.19 7.30 -51.93 -0.38 0.82 16 31 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 32 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.22 1.88 5.12 -52.49 -0.27 1.61 16 37 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.15 2.00 7.53 -52.49 -0.40 1.61 16 40 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 41 H 0.08 0.96 6.28 -51.93 -0.33 0.63 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -31.73 362.19 -8.73 -40.46 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.10 Total: -1.05 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.55 Total: 1.35 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.70 Total: -49.04 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.14 Total: -11.72 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.73 -8.73 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073154848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.431 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds