Wall clock time and date at job start Wed Apr 1 2020 03:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47152 * 239.99706 * 3 2 1 5 5 H 1.48503 * 109.46917 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46902 * 119.99673 * 3 2 1 7 7 C 1.38806 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00141 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.46577 * 125.30661 * 179.97438 * 9 7 2 11 11 C 1.53266 * 108.15949 * 177.88820 * 10 9 7 12 12 H 1.08996 * 113.08704 * 222.46760 * 11 10 9 13 13 C 1.54798 * 109.74546 * 95.76127 * 11 10 9 14 14 C 1.54943 * 101.49999 * 212.29299 * 13 11 10 15 15 N 1.47353 * 104.89281 * 37.23861 * 14 13 11 16 16 C 1.34765 * 125.53181 * 156.80709 * 15 14 13 17 17 O 1.21653 * 120.00311 * 178.27613 * 16 15 14 18 18 C 1.47085 * 120.00086 * 358.27899 * 16 15 14 19 19 C 1.36029 * 127.13825 * 8.28439 * 18 16 15 20 20 O 1.33824 * 109.85211 * 179.97438 * 19 18 16 21 21 C 1.34913 * 111.35182 * 0.02562 * 20 19 18 22 22 C 1.38954 * 133.09082 * 179.97438 * 21 20 19 23 23 C 1.38041 * 119.95384 * 180.02562 * 22 21 20 24 24 F 1.35103 * 119.69782 * 179.97438 * 23 22 21 25 25 C 1.38889 * 120.59788 * 0.02622 * 23 22 21 26 26 C 1.37818 * 120.17986 * 359.95679 * 25 23 22 27 27 C 1.39113 * 119.65881 * 359.77138 * 26 25 23 28 28 C 1.47224 * 108.93800 * 336.53997 * 15 14 13 29 29 H 1.08999 * 112.28639 * 236.24432 * 28 15 14 30 30 C 1.46606 * 125.30309 * 359.97438 * 9 7 2 31 31 H 0.96998 * 119.99628 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.73641 * 58.20410 * 10 9 7 33 33 H 1.09004 * 109.72016 * 297.56390 * 10 9 7 34 34 H 1.08993 * 111.02243 * 330.35044 * 13 11 10 35 35 H 1.08999 * 111.01789 * 94.20496 * 13 11 10 36 36 H 1.09006 * 110.35624 * 278.38414 * 14 13 11 37 37 H 1.08997 * 110.35347 * 156.08857 * 14 13 11 38 38 H 1.08001 * 125.07023 * 359.97113 * 19 18 16 39 39 H 1.08004 * 120.02062 * 0.02562 * 22 21 20 40 40 H 1.08005 * 119.90992 * 179.97438 * 25 23 22 41 41 H 1.08002 * 120.16818 * 180.02562 * 26 25 23 42 42 H 1.09000 * 109.91537 * 78.45308 * 30 9 7 43 43 H 1.09004 * 109.91366 * 317.17000 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.9380 -3.7198 0.0005 11 6 0.8153 -4.7618 0.0542 12 1 1.0278 -5.5843 0.7372 13 6 0.4831 -5.2469 -1.3778 14 6 -1.0346 -5.5360 -1.2617 15 7 -1.5557 -4.4761 -0.3806 16 6 -2.8336 -4.0503 -0.3388 17 8 -3.1615 -3.1866 0.4527 18 6 -3.8321 -4.6298 -1.2502 19 6 -3.6684 -5.6988 -2.0753 20 8 -4.8004 -5.9292 -2.7507 21 6 -5.7604 -5.0417 -2.4177 22 6 -7.0752 -4.8655 -2.8315 23 6 -7.8339 -3.8422 -2.2997 24 9 -9.1115 -3.6753 -2.7061 25 6 -7.2954 -2.9821 -1.3514 26 6 -5.9932 -3.1433 -0.9299 27 6 -5.2222 -4.1750 -1.4556 28 6 -0.4551 -3.9623 0.4513 29 1 -0.6746 -4.0325 1.5167 30 6 -0.1342 -2.5236 0.0005 31 1 -0.4849 0.8401 0.0004 32 1 2.5829 -3.8284 0.8725 33 1 2.5230 -3.8556 -0.9091 34 1 0.6771 -4.4639 -2.1107 35 1 1.0368 -6.1536 -1.6217 36 1 -1.2009 -6.5163 -0.8149 37 1 -1.5073 -5.4802 -2.2423 38 1 -2.7602 -6.2754 -2.1710 39 1 -7.5031 -5.5287 -3.5687 40 1 -7.8989 -2.1850 -0.9429 41 1 -5.5748 -2.4746 -0.1922 42 1 -0.5228 -2.3537 -1.0035 43 1 -0.5733 -1.8096 0.6973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075972930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:39 Heat of formation + Delta-G solvation = 7.279208 kcal Electronic energy + Delta-G solvation = -29993.788265 eV Core-core repulsion = 25728.701125 eV Total energy + Delta-G solvation = -4265.087140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.18033 -42.82904 -40.10941 -37.95945 -37.68483 -35.10258 -33.11101 -32.17222 -30.86928 -30.72116 -29.63329 -28.33934 -26.92959 -24.63972 -24.29958 -23.53476 -22.62468 -21.94252 -20.54787 -19.72157 -19.05185 -18.39294 -17.48607 -16.90391 -16.82800 -16.62799 -16.21929 -15.72695 -15.49863 -15.38769 -15.20757 -14.61637 -14.34661 -14.00708 -14.00010 -13.57925 -13.35482 -13.16556 -12.87313 -12.74638 -12.28597 -12.23162 -12.14105 -11.95464 -11.61271 -11.33577 -11.25982 -11.06838 -10.78751 -10.50817 -10.33170 -10.15734 -10.08817 -9.80771 -9.74606 -9.65758 -8.97229 -8.60250 -8.43352 -8.28480 -6.83344 -5.63374 -3.05837 0.46594 0.92870 1.57750 2.27569 3.06852 3.18962 3.41685 3.45639 3.48081 3.59855 4.00947 4.17557 4.30357 4.49558 4.57240 4.61723 4.65117 4.74332 4.88864 4.97133 5.09562 5.17674 5.32222 5.38971 5.53817 5.55133 5.56901 5.68839 5.73826 5.84695 5.88218 5.94117 5.98567 6.11548 6.17249 6.25030 6.30970 6.47137 6.53510 6.62120 6.75208 6.82899 7.50121 7.62672 7.80261 7.93795 8.35739 8.47103 9.23619 9.84559 10.46041 11.40957 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.003123 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.289123 B = 8962.652596 C =10536.971839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.089 0.911 13 C -0.121 4.121 14 C 0.083 3.917 15 N -0.602 5.602 16 C 0.595 3.405 17 O -0.517 6.517 18 C -0.203 4.203 19 C 0.040 3.960 20 O -0.182 6.182 21 C 0.074 3.926 22 C -0.148 4.148 23 C 0.126 3.874 24 F -0.132 7.132 25 C -0.166 4.166 26 C -0.023 4.023 27 C -0.102 4.102 28 C 0.117 3.883 29 H 0.086 0.914 30 C 0.165 3.835 31 H 0.254 0.746 32 H 0.024 0.976 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.230 0.770 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.020 0.980 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 -15.812 -5.345 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.129 4.129 12 H 0.107 0.893 13 C -0.159 4.159 14 C -0.040 4.040 15 N -0.336 5.336 16 C 0.384 3.616 17 O -0.394 6.394 18 C -0.207 4.207 19 C -0.027 4.027 20 O -0.081 6.081 21 C 0.026 3.974 22 C -0.167 4.167 23 C 0.107 3.893 24 F -0.111 7.111 25 C -0.185 4.185 26 C -0.041 4.041 27 C -0.103 4.103 28 C 0.014 3.986 29 H 0.104 0.896 30 C 0.040 3.960 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.246 0.754 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.038 0.962 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.709 -15.263 -5.119 19.335 hybrid contribution 0.360 0.852 -0.171 0.941 sum -10.349 -14.411 -5.290 18.514 Atomic orbital electron populations 1.69911 1.04762 1.25124 1.56308 1.24847 0.95702 0.97775 1.01958 0.86189 0.78415 0.83205 0.77854 1.21211 1.21562 1.21095 1.18969 0.90397 0.82252 1.44575 0.90400 1.44150 1.01529 0.99910 1.87228 1.20972 0.93307 0.85518 0.98304 1.22886 0.95887 0.97993 0.96109 0.89277 1.22811 0.93191 1.02009 0.97922 1.22728 0.96017 0.91173 0.94061 1.48348 1.07643 1.37902 1.39718 1.16603 0.80086 0.82058 0.82864 1.90841 1.78919 1.30755 1.38836 1.21071 0.94801 1.00626 1.04217 1.25472 0.88520 0.97413 0.91279 1.83877 1.19326 1.48233 1.56682 1.19014 0.90379 0.90836 0.97128 1.19532 0.90430 1.01394 1.05325 1.17090 0.79360 0.96193 0.96682 1.91524 1.35283 1.94906 1.89349 1.21104 0.96508 1.01386 0.99504 1.20642 0.91513 0.94862 0.97106 1.19468 0.92939 0.98461 0.99455 1.23017 0.83420 0.97892 0.94317 0.89638 1.21668 0.84359 0.89898 1.00108 0.93550 0.95789 0.95638 0.89671 0.90049 0.91049 0.90537 0.75409 0.83679 0.83669 0.82990 0.96181 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.52 10.17 55.49 0.56 -26.95 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.50 10.25 -15.06 -0.15 -6.65 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.19 3.37 -172.22 -0.58 -15.78 16 10 C 0.15 2.83 6.65 -3.86 -0.03 2.81 16 11 C -0.11 -1.69 3.91 -88.33 -0.35 -2.03 16 12 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 13 C -0.12 -1.50 6.23 -24.76 -0.15 -1.66 16 14 C 0.08 0.93 5.26 -2.55 -0.01 0.92 16 15 N -0.60 -9.87 2.85 -163.04 -0.46 -10.33 16 16 C 0.60 10.77 7.65 -12.68 -0.10 10.67 16 17 O -0.52 -11.46 16.49 5.23 0.09 -11.37 16 18 C -0.20 -2.98 6.25 -103.24 -0.65 -3.63 16 19 C 0.04 0.44 10.40 29.94 0.31 0.75 16 20 O -0.18 -2.08 10.53 5.27 0.06 -2.03 16 21 C 0.07 0.92 7.39 -38.57 -0.28 0.64 16 22 C -0.15 -1.60 10.03 -39.39 -0.40 -1.99 16 23 C 0.13 1.40 7.28 -39.41 -0.29 1.12 16 24 F -0.13 -1.44 17.25 2.25 0.04 -1.40 16 25 C -0.17 -1.89 10.01 -39.49 -0.40 -2.28 16 26 C -0.02 -0.32 9.89 -39.41 -0.39 -0.71 16 27 C -0.10 -1.47 6.29 -104.96 -0.66 -2.13 16 28 C 0.12 2.21 3.87 -65.74 -0.25 1.96 16 29 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 30 C 0.17 4.10 4.84 -3.39 -0.02 4.08 16 31 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.49 7.74 -51.93 -0.40 0.08 16 34 H 0.08 1.27 7.88 -51.93 -0.41 0.86 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 37 H 0.08 0.71 5.36 -51.93 -0.28 0.43 16 38 H 0.23 1.62 4.65 -52.49 -0.24 1.37 16 39 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.15 2.21 7.58 -52.49 -0.40 1.82 16 42 H 0.02 0.56 7.94 -51.93 -0.41 0.14 16 43 H 0.10 2.84 6.22 -51.93 -0.32 2.52 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -34.21 353.44 -8.87 -43.07 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.97 Total: 0.62 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.90 Total: 1.59 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.48 Total: -53.06 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.14 Total: -13.40 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.21 -8.87 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075972930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.353 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds