Wall clock time and date at job start Wed Apr 1 2020 03:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99900 * 2 1 4 4 H 1.48509 * 109.46841 * 269.99694 * 3 2 1 5 5 H 1.48504 * 109.47165 * 29.99482 * 3 2 1 6 6 H 1.48496 * 109.47045 * 149.99935 * 3 2 1 7 7 C 1.38807 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64487 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.26790 * 178.89898 * 10 9 7 12 12 H 1.09001 * 110.71543 * 96.16961 * 11 10 9 13 13 O 1.42898 * 110.71639 * 219.44351 * 11 10 9 14 14 C 1.55154 * 102.94290 * 337.80696 * 11 10 9 15 15 H 1.09002 * 111.00378 * 277.42832 * 14 11 10 16 16 N 1.46500 * 111.00420 * 153.61252 * 14 11 10 17 17 C 1.34773 * 120.00200 * 158.17403 * 16 14 11 18 18 O 1.21564 * 119.99745 * 0.02562 * 17 16 14 19 19 C 1.47783 * 120.00206 * 180.02562 * 17 16 14 20 20 C 1.40612 * 119.73779 * 0.02562 * 19 17 16 21 21 C 1.35956 * 120.82360 * 179.97438 * 20 19 17 22 22 F 1.35098 * 120.02143 * 180.02562 * 21 20 19 23 23 C 1.40894 * 119.96617 * 0.02562 * 21 20 19 24 24 C 1.40446 * 121.04491 * 180.02562 * 23 21 20 25 25 C 1.36152 * 119.72497 * 179.97438 * 24 23 21 26 26 C 1.39363 * 120.99947 * 359.97438 * 25 24 23 27 27 C 1.36086 * 120.95159 * 0.02562 * 26 25 24 28 28 C 1.40662 * 119.66322 * 359.97438 * 27 26 25 29 29 C 1.38483 * 119.73468 * 179.73241 * 19 17 16 30 30 C 1.47418 * 125.65017 * 179.97438 * 9 7 2 31 31 H 0.96998 * 120.00328 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.88066 * 59.47881 * 10 9 7 33 33 H 1.08996 * 110.00664 * 298.38868 * 10 9 7 34 34 H 0.96701 * 114.00092 * 293.52074 * 13 11 10 35 35 H 0.97001 * 120.00052 * 338.18451 * 16 14 11 36 36 H 1.08008 * 119.58496 * 359.97438 * 20 19 17 37 37 H 1.07995 * 120.13750 * 359.94665 * 24 23 21 38 38 H 1.07994 * 119.49938 * 179.97438 * 25 24 23 39 39 H 1.07993 * 119.52311 * 179.97438 * 26 25 24 40 40 H 1.08005 * 120.17224 * 179.97438 * 27 26 25 41 41 H 1.08010 * 120.24941 * 359.97438 * 29 19 17 42 42 H 1.08995 * 110.37279 * 85.33444 * 30 9 7 43 43 H 1.08997 * 110.36990 * 323.00642 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4484 -4.0442 -0.0284 12 1 -0.6323 -4.4186 0.9786 13 8 -1.5622 -4.3155 -0.8815 14 6 0.8524 -4.6558 -0.6126 15 1 0.8581 -4.5953 -1.7009 16 7 1.0289 -6.0396 -0.1654 17 6 1.8117 -6.8808 -0.8696 18 8 2.3718 -6.4910 -1.8757 19 6 1.9893 -8.2769 -0.4188 20 6 1.3385 -8.7221 0.7454 21 6 1.4859 -10.0019 1.1798 22 9 0.8527 -10.4126 2.3003 23 6 2.2995 -10.8998 0.4609 24 6 2.4674 -12.2269 0.8888 25 6 3.2595 -13.0720 0.1732 26 6 3.9091 -12.6411 -0.9821 27 6 3.7705 -11.3628 -1.4276 28 6 2.9602 -10.4610 -0.7143 29 6 2.7905 -9.1381 -1.1498 30 6 1.9335 -3.7311 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5569 -2.0516 -0.8840 33 1 -0.5573 -2.0845 0.9000 34 1 -2.4001 -3.9544 -0.5612 35 1 0.5822 -6.3506 0.6375 36 1 0.7137 -8.0387 1.3014 37 1 1.9705 -12.5755 1.7821 38 1 3.3863 -14.0916 0.5058 39 1 4.5321 -13.3315 -1.5312 40 1 4.2801 -11.0422 -2.3243 41 1 3.2842 -8.7928 -2.0463 42 1 2.1657 -4.0425 1.0189 43 1 2.8334 -3.7402 -0.6143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077100370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:01 Heat of formation + Delta-G solvation = -50.408015 kcal Electronic energy + Delta-G solvation = -28908.190166 eV Core-core repulsion = 24640.601521 eV Total energy + Delta-G solvation = -4267.588646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.26947 -40.79823 -39.61095 -37.94724 -36.42247 -35.09921 -34.19744 -32.76673 -31.89393 -30.87650 -29.50437 -28.39942 -27.11087 -24.97476 -23.97812 -23.82610 -22.21438 -21.16997 -20.53409 -20.25384 -18.56489 -18.07851 -17.38913 -16.95411 -16.79114 -16.43316 -16.03469 -15.85111 -15.62766 -14.93925 -14.80303 -14.61581 -14.49026 -14.14563 -14.01727 -13.77382 -13.58585 -13.19890 -12.96033 -12.69849 -12.56149 -12.51277 -12.07734 -11.66366 -11.64147 -11.51690 -11.41823 -11.27174 -10.90738 -10.82447 -10.24693 -10.19119 -9.99277 -9.92643 -9.85887 -9.36321 -9.18185 -8.89272 -8.65266 -8.23034 -6.93100 -5.77520 -3.12142 -0.05161 0.31849 1.49460 2.14060 3.12828 3.15913 3.39052 3.44049 3.45684 3.68267 3.72108 4.12459 4.29511 4.41840 4.42602 4.56356 4.59114 4.73451 4.80252 4.85207 4.93825 5.15749 5.29921 5.34389 5.41856 5.47396 5.54891 5.63443 5.63921 5.75195 5.79093 5.82424 6.00791 6.03703 6.08303 6.09450 6.32222 6.45288 6.47012 6.59021 6.83420 7.30429 7.44854 7.57761 7.72264 8.09099 8.15539 8.26410 9.13774 9.73792 10.36540 11.34317 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.002237 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.809743 B =12511.388818 C =13003.646181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.107 0.893 16 N -0.707 5.707 17 C 0.558 3.442 18 O -0.529 6.529 19 C -0.104 4.104 20 C -0.125 4.125 21 C 0.105 3.895 22 F -0.131 7.131 23 C -0.066 4.066 24 C -0.106 4.106 25 C -0.106 4.106 26 C -0.113 4.113 27 C -0.095 4.095 28 C -0.040 4.040 29 C -0.043 4.043 30 C 0.130 3.870 31 H 0.253 0.747 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.377 0.623 35 H 0.397 0.603 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.024 0.976 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -26.430 2.108 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.125 0.875 16 N -0.358 5.358 17 C 0.344 3.656 18 O -0.407 6.407 19 C -0.107 4.107 20 C -0.144 4.144 21 C 0.086 3.914 22 F -0.110 7.110 23 C -0.067 4.067 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.113 4.113 28 C -0.040 4.040 29 C -0.062 4.062 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.224 0.776 35 H 0.232 0.768 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.042 0.958 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.145 -26.198 1.087 26.408 hybrid contribution -0.457 0.974 1.121 1.554 sum 2.688 -25.223 2.208 25.462 Atomic orbital electron populations 1.69918 1.04936 1.25241 1.57078 1.24821 0.95795 0.97809 1.01982 0.86060 0.78557 0.83124 0.77669 1.21461 1.21641 1.20612 1.19088 0.90565 0.82030 1.43940 0.90110 1.44244 1.01193 0.99879 1.87433 1.21822 0.85420 0.87694 1.02255 1.23460 0.85525 0.98631 0.91603 0.92448 1.86467 1.18785 1.80051 1.51458 1.22323 0.94698 0.78560 1.01128 0.87550 1.45857 1.49001 1.11957 1.28960 1.18036 0.79359 0.84606 0.83579 1.90808 1.47483 1.77316 1.25054 1.19704 1.00329 0.94677 0.95995 1.20873 1.01301 0.94962 0.97301 1.17079 0.96228 0.92921 0.85163 1.91512 1.79860 1.90830 1.48776 1.18129 0.98342 0.94452 0.95735 1.20988 0.99040 0.92045 1.00301 1.20934 0.96421 0.99982 0.95053 1.20959 0.99407 0.96168 0.96521 1.21136 0.97419 0.93205 0.99526 1.17867 0.97773 0.94070 0.94277 1.21576 0.94877 0.90890 0.98876 1.21848 0.94867 0.85683 0.97339 0.93631 0.92039 0.93246 0.77604 0.76823 0.84164 0.84954 0.85423 0.85346 0.84539 0.83139 0.95800 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.31 55.49 0.57 -26.15 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.30 3.39 -170.08 -0.58 -15.88 16 10 C 0.15 3.62 5.15 -3.06 -0.02 3.60 16 11 C 0.07 1.24 3.96 -24.90 -0.10 1.14 16 12 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 13 O -0.56 -9.61 13.39 -35.23 -0.47 -10.08 16 14 C 0.14 2.58 3.09 -65.78 -0.20 2.38 16 15 H 0.11 2.28 7.63 -51.93 -0.40 1.89 16 16 N -0.71 -10.58 5.16 -52.69 -0.27 -10.85 16 17 C 0.56 8.65 7.76 -12.36 -0.10 8.56 16 18 O -0.53 -10.08 15.99 5.31 0.08 -9.99 16 19 C -0.10 -1.28 5.87 -105.01 -0.62 -1.90 16 20 C -0.12 -1.33 9.41 -39.51 -0.37 -1.70 16 21 C 0.11 1.11 7.23 -39.40 -0.28 0.83 16 22 F -0.13 -1.37 16.61 2.25 0.04 -1.34 16 23 C -0.07 -0.66 5.75 -106.71 -0.61 -1.28 16 24 C -0.11 -0.87 9.59 -39.50 -0.38 -1.25 16 25 C -0.11 -0.70 9.95 -39.91 -0.40 -1.10 16 26 C -0.11 -0.73 9.95 -39.94 -0.40 -1.12 16 27 C -0.09 -0.73 9.77 -39.44 -0.39 -1.12 16 28 C -0.04 -0.39 5.74 -106.85 -0.61 -1.01 16 29 C -0.04 -0.48 9.34 -38.71 -0.36 -0.84 16 30 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 33 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 34 H 0.38 4.86 9.12 45.56 0.42 5.27 16 35 H 0.40 4.74 6.52 -40.82 -0.27 4.47 16 36 H 0.14 1.24 6.34 -52.48 -0.33 0.91 16 37 H 0.13 0.91 7.70 -52.49 -0.40 0.51 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 41 H 0.15 1.61 7.61 -52.48 -0.40 1.21 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -33.74 365.29 -9.47 -43.22 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.23 Total: 7.40 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -5.10 Total: 1.11 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.28 Total: -52.88 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.39 Total: -20.07 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.74 -9.47 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077100370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.191 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds