Wall clock time and date at job start Wed Apr 1 2020 03:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47049 * 269.99827 * 3 2 1 5 5 H 1.48492 * 109.47053 * 30.00257 * 3 2 1 6 6 H 1.48497 * 109.46894 * 150.00346 * 3 2 1 7 7 C 1.38814 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99778 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64682 * 0.05274 * 9 7 2 11 11 C 1.54909 * 104.82833 * 204.09143 * 10 9 7 12 12 H 1.08992 * 111.00818 * 81.06020 * 11 10 9 13 13 O 1.42907 * 111.00159 * 204.91606 * 11 10 9 14 14 C 1.55154 * 101.58171 * 322.98371 * 11 10 9 15 15 H 1.09002 * 110.87431 * 277.07329 * 14 11 10 16 16 N 1.46507 * 110.72202 * 153.86622 * 14 11 10 17 17 C 1.34774 * 119.99878 * 160.02121 * 16 14 11 18 18 O 1.21576 * 120.00077 * 0.02562 * 17 16 14 19 19 C 1.47683 * 120.00041 * 180.02562 * 17 16 14 20 20 C 1.38548 * 119.75952 * 0.02562 * 19 17 16 21 21 C 1.40230 * 119.48031 * 179.97438 * 20 19 17 22 22 C 1.40691 * 121.09091 * 179.97438 * 21 20 19 23 23 C 1.36073 * 119.66413 * 180.02562 * 22 21 20 24 24 C 1.39384 * 120.96651 * 0.27976 * 23 22 21 25 25 C 1.36114 * 121.02040 * 359.42793 * 24 23 22 26 26 C 1.40541 * 119.71924 * 0.56278 * 25 24 23 27 27 C 1.40573 * 121.01352 * 179.70663 * 26 25 24 28 28 C 1.36043 * 120.00258 * 180.02562 * 27 26 25 29 29 F 1.35101 * 119.61037 * 180.02562 * 28 27 26 30 30 C 1.47020 * 125.65069 * 180.02562 * 9 7 2 31 31 H 0.97007 * 119.99473 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.36346 * 322.92229 * 10 9 7 33 33 H 1.08995 * 110.36800 * 85.24708 * 10 9 7 34 34 H 0.96701 * 113.99242 * 292.19430 * 13 11 10 35 35 H 0.96991 * 119.99606 * 340.03260 * 16 14 11 36 36 H 1.07999 * 120.26378 * 359.97438 * 20 19 17 37 37 H 1.07994 * 120.16821 * 0.02562 * 22 21 20 38 38 H 1.08002 * 119.51139 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.48665 * 179.69515 * 24 23 22 40 40 H 1.08000 * 120.13736 * 180.25556 * 25 24 23 41 41 H 1.07995 * 119.99761 * 359.97438 * 27 26 25 42 42 H 1.08999 * 109.88234 * 59.56085 * 30 9 7 43 43 H 1.09003 * 110.01139 * 298.47437 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 -0.0011 11 6 -0.4019 -3.9324 0.6104 12 1 -0.3526 -3.8986 1.6987 13 8 -1.6570 -4.4573 0.1726 14 6 0.7782 -4.7524 0.0254 15 1 0.5480 -5.1000 -0.9817 16 7 1.1081 -5.8815 0.8987 17 6 1.8002 -6.9304 0.4116 18 8 2.1512 -6.9394 -0.7523 19 6 2.1323 -8.0688 1.2918 20 6 1.7294 -8.0537 2.6173 21 6 2.0474 -9.1380 3.4477 22 6 1.6557 -9.1577 4.7988 23 6 1.9803 -10.2246 5.5786 24 6 2.7017 -11.2987 5.0603 25 6 3.0925 -11.3173 3.7566 26 6 2.7765 -10.2340 2.9189 27 6 3.1719 -10.2220 1.5700 28 6 2.8554 -9.1624 0.7777 29 9 3.2389 -9.1594 -0.5177 30 6 1.9316 -3.7275 -0.0005 31 1 -0.4850 0.8402 -0.0004 32 1 -0.5995 -1.7590 0.6146 33 1 -0.5270 -2.4864 -1.0196 34 1 -2.4242 -3.9770 0.5128 35 1 0.8282 -5.8742 1.8274 36 1 1.1747 -7.2134 3.0080 37 1 1.1002 -8.3304 5.2150 38 1 1.6787 -10.2370 6.6156 39 1 2.9507 -12.1310 5.7019 40 1 3.6475 -12.1588 3.3688 41 1 3.7277 -11.0536 1.1629 42 1 2.5576 -3.8511 0.8832 43 1 2.5303 -3.8660 -0.9009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077367489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:48 Heat of formation + Delta-G solvation = -46.938931 kcal Electronic energy + Delta-G solvation = -29188.487770 eV Core-core repulsion = 24921.049555 eV Total energy + Delta-G solvation = -4267.438215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.92421 -40.78619 -39.60459 -37.86389 -36.28800 -35.11239 -34.21204 -33.16652 -31.79517 -30.65400 -29.55668 -28.34290 -27.00593 -24.98177 -24.24766 -23.31967 -22.46953 -21.20042 -20.63155 -20.01463 -18.46583 -18.02562 -17.58789 -16.98422 -16.90867 -15.86388 -15.83778 -15.77667 -15.36037 -15.15580 -14.70689 -14.58840 -14.56249 -13.93938 -13.78423 -13.70932 -13.64127 -13.33567 -13.24602 -12.89822 -12.36549 -12.29802 -11.97491 -11.84698 -11.53839 -11.38976 -11.35964 -11.25593 -11.01145 -10.84948 -10.40373 -10.20652 -9.97207 -9.90044 -9.75734 -9.32178 -8.99075 -8.79017 -8.73967 -8.30473 -6.94394 -5.74350 -3.16685 -0.08760 0.39404 1.52444 2.17872 3.12616 3.17781 3.36981 3.42191 3.43700 3.69784 3.93279 4.07933 4.29320 4.39138 4.42336 4.54042 4.58160 4.77905 4.80894 4.83180 4.99311 5.18193 5.27410 5.39456 5.40441 5.48014 5.57495 5.60984 5.65792 5.69040 5.82209 5.83805 6.04434 6.06310 6.06954 6.15215 6.35487 6.41331 6.51890 6.66328 6.87044 7.28929 7.49199 7.58401 7.69689 8.06073 8.22166 8.29371 9.11897 9.72217 10.34457 11.30030 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.002470 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.954763 B =11332.072688 C =11680.990169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.068 3.932 12 H 0.062 0.938 13 O -0.565 6.565 14 C 0.143 3.857 15 H 0.102 0.898 16 N -0.708 5.708 17 C 0.553 3.447 18 O -0.519 6.519 19 C -0.158 4.158 20 C -0.032 4.032 21 C -0.075 4.075 22 C -0.089 4.089 23 C -0.124 4.124 24 C -0.100 4.100 25 C -0.114 4.114 26 C -0.010 4.010 27 C -0.159 4.159 28 C 0.159 3.841 29 F -0.114 7.114 30 C 0.130 3.870 31 H 0.253 0.747 32 H 0.114 0.886 33 H 0.026 0.974 34 H 0.378 0.622 35 H 0.396 0.604 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.145 0.855 42 H 0.030 0.970 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -22.502 12.984 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.007 3.993 12 H 0.080 0.920 13 O -0.370 6.370 14 C 0.038 3.962 15 H 0.120 0.880 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.396 6.396 19 C -0.162 4.162 20 C -0.051 4.051 21 C -0.075 4.075 22 C -0.107 4.107 23 C -0.142 4.142 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.010 4.010 27 C -0.178 4.178 28 C 0.138 3.862 29 F -0.092 7.092 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.044 0.956 34 H 0.225 0.775 35 H 0.231 0.769 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.163 0.837 42 H 0.048 0.952 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.817 -22.680 11.752 25.609 hybrid contribution 0.069 1.226 0.472 1.316 sum 1.887 -21.454 12.224 24.764 Atomic orbital electron populations 1.69734 1.04943 1.24983 1.57691 1.24803 0.95791 0.97837 1.02201 0.86013 0.78498 0.82957 0.77692 1.21494 1.21597 1.20617 1.19112 0.90637 0.82101 1.43150 0.90178 1.44292 1.01474 0.99770 1.87236 1.22554 0.85571 0.91832 0.99640 1.23636 0.82590 0.96085 0.96978 0.92018 1.86422 1.15534 1.58771 1.76284 1.22064 0.94288 0.84846 0.94973 0.88005 1.45880 1.56443 1.19207 1.14376 1.17957 0.78834 0.82039 0.87236 1.90859 1.52218 1.79677 1.16799 1.20134 1.04338 0.96385 0.95305 1.21497 0.95222 0.97123 0.91253 1.18023 1.00356 0.94513 0.94586 1.21121 0.98676 0.98783 0.92072 1.20901 0.98999 0.93989 1.00322 1.20963 0.97003 0.98376 0.95425 1.21019 1.00748 0.97642 0.93819 1.17880 0.96174 0.94140 0.92831 1.20883 1.04564 0.99100 0.93296 1.17202 0.95672 0.93855 0.79442 1.91619 1.88198 1.96313 1.33094 1.21627 0.93637 0.85270 0.99195 0.93584 0.86889 0.95571 0.77528 0.76878 0.83916 0.84871 0.85539 0.85599 0.85099 0.83691 0.95161 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.32 3.39 -170.07 -0.58 -15.89 16 10 C 0.13 3.06 5.62 -2.53 -0.01 3.05 16 11 C 0.07 1.24 4.04 -24.58 -0.10 1.14 16 12 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 13 O -0.57 -9.50 13.47 -35.23 -0.47 -9.98 16 14 C 0.14 2.72 2.97 -66.09 -0.20 2.53 16 15 H 0.10 2.17 7.69 -51.93 -0.40 1.77 16 16 N -0.71 -10.97 5.08 -53.02 -0.27 -11.24 16 17 C 0.55 9.25 7.76 -12.40 -0.10 9.15 16 18 O -0.52 -10.79 15.00 5.30 0.08 -10.71 16 19 C -0.16 -2.11 5.87 -104.95 -0.62 -2.73 16 20 C -0.03 -0.32 9.28 -38.72 -0.36 -0.68 16 21 C -0.07 -0.70 5.74 -106.84 -0.61 -1.31 16 22 C -0.09 -0.64 9.77 -39.43 -0.39 -1.03 16 23 C -0.12 -0.78 9.95 -39.93 -0.40 -1.17 16 24 C -0.10 -0.61 9.95 -39.92 -0.40 -1.01 16 25 C -0.11 -0.82 9.76 -39.48 -0.39 -1.20 16 26 C -0.01 -0.09 5.75 -106.76 -0.61 -0.71 16 27 C -0.16 -1.63 9.69 -39.49 -0.38 -2.01 16 28 C 0.16 2.11 7.21 -39.39 -0.28 1.83 16 29 F -0.11 -1.81 15.46 2.25 0.03 -1.77 16 30 C 0.13 2.85 6.99 -3.07 -0.02 2.83 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.38 4.76 9.12 45.56 0.42 5.17 16 35 H 0.40 4.80 6.51 -40.82 -0.27 4.53 16 36 H 0.14 1.08 6.35 -52.49 -0.33 0.75 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -34.53 363.75 -9.53 -44.06 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.23 Total: 6.95 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -5.11 Total: 1.98 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.29 Total: -52.81 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.40 Total: -20.69 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.53 -9.53 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077367489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.879 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds