Wall clock time and date at job start Wed Apr 1 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00324 * 2 1 4 4 H 1.48504 * 109.46949 * 269.99715 * 3 2 1 5 5 H 1.48492 * 109.47083 * 30.00034 * 3 2 1 6 6 H 1.48496 * 109.47016 * 150.00115 * 3 2 1 7 7 C 1.38820 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99733 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65009 * 0.04226 * 9 7 2 11 11 C 1.55126 * 104.94104 * 203.96791 * 10 9 7 12 12 H 1.09006 * 110.93534 * 81.21994 * 11 10 9 13 13 O 1.42902 * 111.16281 * 205.13076 * 11 10 9 14 14 C 1.55156 * 101.48946 * 323.22210 * 11 10 9 15 15 H 1.08996 * 110.72200 * 276.83529 * 14 11 10 16 16 N 1.46494 * 110.71930 * 153.73264 * 14 11 10 17 17 C 1.34784 * 119.99635 * 157.44429 * 16 14 11 18 18 O 1.21601 * 120.00065 * 0.02562 * 17 16 14 19 19 C 1.47494 * 119.99560 * 179.97438 * 17 16 14 20 20 N 1.33518 * 119.93359 * 0.02562 * 19 17 16 21 21 N 1.28389 * 123.17096 * 179.97438 * 20 19 17 22 22 C 1.34033 * 121.91781 * 0.02562 * 21 20 19 23 23 C 1.40256 * 121.55604 * 180.02562 * 22 21 20 24 24 C 1.36303 * 119.68455 * 179.97438 * 23 22 21 25 25 C 1.39210 * 121.10925 * 359.97438 * 24 23 22 26 26 C 1.36396 * 120.80823 * 0.02562 * 25 24 23 27 27 C 1.39980 * 119.49671 * 359.95705 * 26 25 24 28 28 C 1.39872 * 119.92705 * 179.72088 * 19 17 16 29 29 O 1.35268 * 121.37958 * 0.02630 * 28 19 17 30 30 C 1.47020 * 125.64721 * 180.02562 * 9 7 2 31 31 H 0.96996 * 119.99207 * 359.97438 * 1 2 3 32 32 H 1.08994 * 110.36680 * 322.93038 * 10 9 7 33 33 H 1.08996 * 110.36583 * 85.26056 * 10 9 7 34 34 H 0.96703 * 114.00238 * 292.17663 * 13 11 10 35 35 H 0.96995 * 120.00292 * 337.71861 * 16 14 11 36 36 H 1.08007 * 120.15982 * 359.97438 * 23 22 21 37 37 H 1.08001 * 119.44754 * 180.02562 * 24 23 22 38 38 H 1.07998 * 119.59484 * 180.02562 * 25 24 23 39 39 H 1.08008 * 120.24931 * 179.97438 * 26 25 24 40 40 H 0.96698 * 114.00499 * 89.99554 * 29 28 19 41 41 H 1.09001 * 109.88519 * 59.55687 * 30 9 7 42 42 H 1.09006 * 110.00992 * 298.46241 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1416 -2.5331 -0.0009 11 6 -0.4051 -3.9353 0.6081 12 1 -0.3587 -3.9021 1.6967 13 8 -1.6580 -4.4623 0.1668 14 6 0.7781 -4.7525 0.0255 15 1 0.5479 -5.1001 -0.9815 16 7 1.1079 -5.8815 0.8989 17 6 1.7579 -6.9518 0.4001 18 8 2.0710 -6.9800 -0.7745 19 6 2.0905 -8.0882 1.2795 20 7 1.7465 -8.0555 2.5693 21 7 2.0041 -9.0092 3.3893 22 6 2.6461 -10.1209 3.0042 23 6 2.9232 -11.1584 3.9065 24 6 3.5780 -12.2726 3.4735 25 6 3.9785 -12.4015 2.1465 26 6 3.7259 -11.4128 1.2415 27 6 3.0549 -10.2557 1.6541 28 6 2.7599 -9.2006 0.7592 29 8 3.1152 -9.2626 -0.5445 30 6 1.9316 -3.7275 -0.0005 31 1 -0.4849 0.8401 0.0004 32 1 -0.5995 -1.7590 0.6148 33 1 -0.5272 -2.4865 -1.0193 34 1 -2.4271 -3.9838 0.5054 35 1 0.8550 -5.8606 1.8350 36 1 2.6192 -11.0748 4.9395 37 1 3.7891 -13.0694 4.1715 38 1 4.4955 -13.2952 1.8298 39 1 4.0411 -11.5220 0.2142 40 1 3.9939 -8.9045 -0.7302 41 1 2.5576 -3.8512 0.8832 42 1 2.5301 -3.8661 -0.9010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077766673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:47 Heat of formation + Delta-G solvation = -33.794457 kcal Electronic energy + Delta-G solvation = -29291.692814 eV Core-core repulsion = 25044.744548 eV Total energy + Delta-G solvation = -4246.948266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.70258 -41.02778 -39.58849 -38.99176 -38.65889 -36.71747 -35.65357 -33.96893 -33.47866 -32.66261 -31.51259 -30.19904 -28.80601 -26.74333 -26.26712 -25.74086 -23.47732 -22.83493 -22.33083 -21.65742 -20.28620 -20.02864 -19.49413 -18.95448 -18.40608 -17.88872 -17.31362 -17.17755 -16.65629 -16.52738 -15.95003 -15.81849 -15.63735 -15.51602 -15.36822 -15.07721 -14.91908 -14.70065 -14.04919 -13.79078 -13.64626 -13.44691 -13.23941 -13.17424 -13.16294 -12.91226 -12.85296 -12.73211 -12.16707 -12.06852 -11.94297 -11.58984 -11.47750 -11.24895 -11.05505 -10.90349 -10.77774 -10.52290 -10.28671 -9.42168 -8.98933 -7.82650 -5.29233 -1.29469 -0.83473 0.52354 1.17206 1.47176 1.49257 1.57925 1.75799 1.99434 2.39617 2.45641 2.65384 2.73638 3.04438 3.11049 3.28447 3.33847 3.56247 3.58491 3.64386 3.82170 4.00818 4.03650 4.12980 4.15188 4.27521 4.35906 4.39864 4.55149 4.61326 4.79706 4.86243 4.87916 4.97018 5.21382 5.29965 5.32441 5.36216 5.42878 5.66142 5.66881 6.19568 6.29162 6.32209 6.84033 6.92762 7.03674 7.29927 7.67233 8.29900 9.19435 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.002317 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.079785 B =12079.194295 C =12242.614102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.985 3.015 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.618 5.618 10 C 0.136 3.864 11 C 0.089 3.911 12 H 0.084 0.916 13 O -0.567 6.567 14 C 0.155 3.845 15 H 0.084 0.916 16 N -0.687 5.687 17 C 0.577 3.423 18 O -0.547 6.547 19 C -0.065 4.065 20 N -0.192 5.192 21 N -0.227 5.227 22 C 0.068 3.932 23 C -0.097 4.097 24 C -0.065 4.065 25 C -0.083 4.083 26 C -0.096 4.096 27 C -0.114 4.114 28 C 0.211 3.789 29 O -0.464 6.464 30 C 0.133 3.867 31 H 0.251 0.749 32 H 0.092 0.908 33 H -0.005 1.005 34 H 0.398 0.602 35 H 0.417 0.583 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.159 0.841 40 H 0.425 0.575 41 H 0.038 0.962 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -28.912 8.665 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.813 3.187 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.346 5.346 10 C 0.010 3.990 11 C 0.028 3.972 12 H 0.102 0.898 13 O -0.375 6.375 14 C 0.049 3.951 15 H 0.102 0.898 16 N -0.338 5.338 17 C 0.362 3.638 18 O -0.424 6.424 19 C -0.200 4.200 20 N -0.052 5.052 21 N -0.086 5.086 22 C -0.058 4.058 23 C -0.118 4.118 24 C -0.085 4.085 25 C -0.102 4.102 26 C -0.115 4.115 27 C -0.123 4.123 28 C 0.151 3.849 29 O -0.278 6.278 30 C 0.007 3.993 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.013 0.987 34 H 0.248 0.752 35 H 0.254 0.746 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.195 0.805 39 H 0.177 0.823 40 H 0.290 0.710 41 H 0.056 0.944 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.284 -28.536 8.493 30.651 hybrid contribution 0.680 1.338 -0.846 1.723 sum 7.965 -27.198 7.647 29.353 Atomic orbital electron populations 1.69959 1.06146 1.25437 1.58051 1.25666 0.96765 1.01007 1.02081 0.84981 0.77643 0.78658 0.77422 1.21475 1.21497 1.19400 1.19448 0.91082 0.83274 1.43436 0.90010 1.44529 1.02377 1.00544 1.87163 1.22387 0.84652 0.94234 0.97706 1.23306 0.83338 0.92807 0.97713 0.89843 1.86383 1.15708 1.58882 1.76520 1.21673 0.93584 0.85100 0.94733 0.89767 1.45662 1.57308 1.16587 1.14245 1.17599 0.78144 0.81681 0.86382 1.90812 1.54387 1.80686 1.16557 1.22828 1.06620 0.96714 0.93802 1.73084 1.11826 1.20115 1.00134 1.73723 1.10411 0.98278 1.26188 1.20822 0.96398 0.95733 0.92848 1.21143 0.98984 0.91475 1.00242 1.21683 0.92831 0.97120 0.96879 1.21686 0.96561 0.99334 0.92615 1.21235 0.96752 0.91083 1.02397 1.19381 1.02174 0.97660 0.93044 1.19543 0.90687 0.89918 0.84705 1.84530 1.41482 1.84012 1.17758 1.21647 0.94417 0.84602 0.98657 0.93930 0.89000 0.98715 0.75180 0.74552 0.82012 0.80180 0.80539 0.82345 0.71021 0.94413 0.95921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.64 10.09 21.65 0.22 -55.42 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 3 Si 0.99 45.61 29.55 68.60 2.03 47.64 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.24 -13.89 10.27 84.04 0.86 -13.03 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 9 N -0.62 -32.94 3.40 -691.55 -2.35 -35.29 16 10 C 0.14 6.80 5.63 86.93 0.49 7.29 16 11 C 0.09 3.51 4.06 32.06 0.13 3.64 16 12 H 0.08 3.01 8.00 -2.38 -0.02 2.99 16 13 O -0.57 -20.14 13.48 -148.98 -2.01 -22.15 16 14 C 0.15 6.26 3.00 46.18 0.14 6.39 16 15 H 0.08 3.75 7.62 -2.39 -0.02 3.73 16 16 N -0.69 -23.96 5.11 -440.11 -2.25 -26.21 16 17 C 0.58 20.28 7.79 86.68 0.68 20.96 16 18 O -0.55 -21.70 14.90 16.63 0.25 -21.45 16 19 C -0.07 -1.95 6.83 41.72 0.29 -1.67 16 20 N -0.19 -5.70 10.68 -48.51 -0.52 -6.22 16 21 N -0.23 -6.03 11.54 -52.03 -0.60 -6.63 16 22 C 0.07 1.39 6.68 40.16 0.27 1.66 16 23 C -0.10 -1.14 10.00 22.31 0.22 -0.92 16 24 C -0.07 -0.32 9.94 22.05 0.22 -0.10 16 25 C -0.08 -0.41 9.96 22.07 0.22 -0.19 16 26 C -0.10 -1.05 9.62 22.26 0.21 -0.84 16 27 C -0.11 -2.20 5.75 -21.21 -0.12 -2.32 16 28 C 0.21 5.15 6.80 23.46 0.16 5.31 16 29 O -0.46 -10.20 11.07 -64.86 -0.72 -10.92 16 30 C 0.13 6.08 7.00 86.73 0.61 6.69 16 31 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.09 5.00 5.87 -2.39 -0.01 4.99 16 33 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.40 10.54 9.12 -74.06 -0.68 9.87 16 35 H 0.42 13.16 7.86 -92.71 -0.73 12.43 16 36 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.18 -0.52 8.06 -2.91 -0.02 -0.54 16 38 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 39 H 0.16 1.19 7.74 -2.91 -0.02 1.17 16 40 H 0.42 5.77 9.06 -74.06 -0.67 5.10 16 41 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 42 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -80.01 359.87 -2.06 -82.07 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.95 Total: 24.77 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: 4.84 Total: 29.80 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -5.50 Total: -129.77 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -2.48 Total: -54.51 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -80.01 -2.06 -82.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077766673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.271 kcal (2) G-P(sol) polarization free energy of solvation -80.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds